Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46920 * 2 1 4 4 C 1.53005 * 109.46916 * 240.00265 * 2 1 3 5 5 O 1.42895 * 109.47280 * 120.00459 * 2 1 3 6 6 N 1.41596 * 114.00266 * 59.99673 * 5 2 1 7 7 C 1.34780 * 120.00167 * 179.97438 * 6 5 2 8 8 O 1.21591 * 119.99638 * 0.02562 * 7 6 5 9 9 N 1.34768 * 120.00283 * 180.02562 * 7 6 5 10 10 C 1.40196 * 120.00423 * 180.02562 * 9 7 6 11 11 C 1.40405 * 125.97001 * 0.02562 * 10 9 7 12 12 C 1.35238 * 107.87064 * 179.74102 * 11 10 9 13 13 N 1.34966 * 107.85507 * 0.36692 * 12 11 10 14 14 C 1.46500 * 125.97782 * 179.89559 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71059 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31207 * 125.97824 * 179.97438 * 10 9 7 24 24 H 1.08999 * 109.47306 * 299.99689 * 1 2 3 25 25 H 1.08993 * 109.47446 * 59.99856 * 1 2 3 26 26 H 1.09003 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46641 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46856 * 299.99989 * 3 2 1 29 29 H 1.08996 * 109.47233 * 60.00422 * 3 2 1 30 30 H 1.09003 * 109.47161 * 299.99907 * 4 2 1 31 31 H 1.09002 * 109.46913 * 59.99873 * 4 2 1 32 32 H 1.08998 * 109.46946 * 179.97438 * 4 2 1 33 33 H 0.96994 * 119.99794 * 0.02562 * 6 5 2 34 34 H 0.97000 * 119.99831 * 359.97438 * 9 7 6 35 35 H 1.08004 * 126.06253 * 359.96901 * 11 10 9 36 36 H 1.07999 * 126.07487 * 180.25848 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.71821 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71592 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1667 6 7 1.5885 -2.0232 1.2635 7 6 1.9694 -2.7726 2.3170 8 8 2.6714 -2.2898 3.1844 9 7 1.5722 -4.0572 2.4089 10 6 1.9679 -4.8366 3.5049 11 6 2.7722 -4.4092 4.5734 12 6 2.9189 -5.4498 5.4246 13 7 2.2423 -6.5002 4.9145 14 6 2.1392 -7.8319 5.5164 15 6 0.6865 -8.1971 5.6823 16 1 -0.0829 -7.5065 5.3702 17 6 0.3397 -9.4128 6.2326 18 7 1.2767 -10.2560 6.6078 19 14 -1.4609 -9.8658 6.4375 20 1 -1.5654 -11.2181 7.0423 21 1 -2.1228 -8.8748 7.3236 22 1 -2.1258 -9.8646 5.1097 23 7 1.6506 -6.0928 3.7121 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2494 31 1 1.6766 -0.2073 -2.1393 32 1 3.1299 -0.7208 -1.2496 33 1 1.0288 -2.4084 0.5713 34 1 1.0118 -4.4422 1.7170 35 1 3.1953 -3.4230 4.6958 36 1 3.4796 -5.4421 6.3476 37 1 2.6265 -7.8286 6.4914 38 1 2.6258 -8.5617 4.8695 39 1 2.2118 -10.0209 6.5012 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344042627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = 58.400169 kcal Electronic energy + Delta-G solvation = -21629.269834 eV Core-core repulsion = 18190.594703 eV Total energy + Delta-G solvation = -3438.675132 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.75791 -39.72706 -38.57810 -34.83509 -34.31111 -33.66839 -31.70084 -30.32211 -29.33165 -27.85788 -27.84230 -26.17633 -23.25823 -22.10121 -21.02342 -20.62444 -19.86147 -18.20819 -17.65834 -17.16365 -16.38180 -15.86033 -15.59563 -15.09834 -14.83250 -14.24399 -14.19239 -14.02718 -13.77097 -13.34669 -13.14131 -12.79592 -12.46519 -12.43419 -12.36636 -12.23119 -12.19536 -11.80927 -11.31838 -11.18053 -11.10410 -10.80356 -10.46572 -10.15674 -10.13513 -9.73526 -9.10421 -8.95647 -8.56939 -8.18107 -7.47741 -6.56742 -4.30702 1.34167 2.59463 3.05985 3.18254 3.38629 3.40128 3.59290 3.77178 3.94362 4.18644 4.27954 4.29749 4.42203 4.45480 5.01771 5.08226 5.16861 5.21019 5.28982 5.32845 5.38310 5.41535 5.58810 5.70718 5.74281 5.75483 6.10623 6.35707 6.46811 6.55447 6.64625 6.80638 6.98354 7.39790 7.62920 7.84781 7.86567 8.35975 8.56113 8.56926 8.63920 9.37485 10.80790 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032799 B = 0.002961 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.473433 B = 9454.894474 C = 9964.404168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.077 3.923 3 C -0.134 4.134 4 C -0.174 4.174 5 O -0.112 6.112 6 N -0.612 5.612 7 C 0.730 3.270 8 O -0.549 6.549 9 N -0.635 5.635 10 C 0.280 3.720 11 C -0.283 4.283 12 C 0.052 3.948 13 N -0.319 5.319 14 C 0.250 3.750 15 C -0.607 4.607 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.402 0.598 34 H 0.408 0.592 35 H 0.163 0.837 36 H 0.168 0.832 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 19.556 -15.116 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.037 3.963 3 C -0.192 4.192 4 C -0.232 4.232 5 O -0.116 6.116 6 N -0.317 5.317 7 C 0.430 3.570 8 O -0.421 6.421 9 N -0.289 5.289 10 C 0.026 3.974 11 C -0.314 4.314 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.646 4.646 16 H 0.082 0.918 17 C -0.182 4.182 18 N -0.541 5.541 19 Si 0.904 3.096 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.134 5.134 24 H 0.089 0.911 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.242 0.758 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.972 17.812 -14.033 22.696 hybrid contribution 0.756 1.589 -1.232 2.148 sum -0.217 19.401 -15.265 24.687 Atomic orbital electron populations 1.22390 0.94481 1.02854 1.03477 1.22133 0.94557 0.93692 0.85945 1.21746 1.02509 0.91633 1.03316 1.22391 1.02757 1.00708 0.97323 1.90659 1.71448 1.06571 1.42906 1.45847 1.57425 1.02454 1.25962 1.14907 0.80784 0.79903 0.81428 1.90890 1.40561 1.71133 1.39535 1.41003 1.54631 1.08946 1.24335 1.18669 0.98960 0.90583 0.89149 1.21549 1.11284 1.02022 0.96575 1.22557 0.99151 0.87967 1.00115 1.48765 1.35324 1.11391 1.14561 1.19755 0.99986 0.74754 0.92361 1.22109 0.90651 1.05877 1.45932 0.91830 1.25920 1.07009 0.92228 0.93062 1.70850 1.01491 1.37304 1.44430 0.83419 0.73193 0.76290 0.76716 1.20548 1.21238 1.21165 1.77342 1.22712 1.09887 1.03444 0.91125 0.90976 0.92218 0.91188 0.90112 0.91165 0.92230 0.90975 0.91159 0.75724 0.75770 0.81932 0.81438 0.93583 0.94779 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 8.51 37.16 0.32 -0.78 16 2 C 0.08 0.58 1.13 -90.62 -0.10 0.48 16 3 C -0.13 -0.82 8.84 37.16 0.33 -0.49 16 4 C -0.17 -1.07 8.51 37.16 0.32 -0.75 16 5 O -0.11 -1.35 10.63 -29.62 -0.31 -1.67 16 6 N -0.61 -7.09 5.60 27.63 0.15 -6.93 16 7 C 0.73 11.54 8.68 -86.92 -0.75 10.79 16 8 O -0.55 -10.87 13.88 -12.86 -0.18 -11.05 16 9 N -0.64 -9.98 5.45 -15.51 -0.08 -10.07 16 10 C 0.28 5.72 8.11 -154.36 -1.25 4.46 16 11 C -0.28 -5.77 9.61 -39.83 -0.38 -6.16 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.50 3.67 -62.56 -0.23 -7.73 16 14 C 0.25 6.34 5.57 -5.19 -0.03 6.31 16 15 C -0.61 -17.12 9.24 -34.44 -0.32 -17.43 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 18 N -0.91 -26.40 13.65 55.43 0.76 -25.64 16 19 Si 1.08 24.92 29.90 -169.99 -5.08 19.84 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.30 -7.02 12.42 31.44 0.39 -6.63 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.36 6.97 -51.93 -0.36 -0.01 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.35 6.96 -51.93 -0.36 -0.02 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.40 3.19 6.44 -40.82 -0.26 2.92 16 34 H 0.41 4.96 8.84 -40.82 -0.36 4.60 16 35 H 0.16 3.29 5.91 -52.48 -0.31 2.98 16 36 H 0.17 2.78 8.06 -52.49 -0.42 2.35 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 39 H 0.27 7.62 7.22 -40.82 -0.29 7.32 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -35.19 332.76 -7.11 -42.31 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.37 Total: 4.75 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.17 Total: -2.19 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.99 Total: -57.00 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.49 Total: -12.72 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.19 -7.11 -42.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344042627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.707 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds