Wall clock time and date at job start Tue Mar 31 2020 05:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53008 * 109.46836 * 2 1 4 4 H 1.08992 * 109.46838 * 55.00384 * 3 2 1 5 5 C 1.50702 * 109.46875 * 174.99860 * 3 2 1 6 6 H 1.08003 * 120.00057 * 120.00067 * 5 3 2 7 7 C 1.37875 * 120.00191 * 300.00363 * 5 3 2 8 8 N 1.31516 * 119.99794 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00116 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47127 * 90.00268 * 9 7 5 11 11 H 1.48499 * 109.47297 * 210.00466 * 9 7 5 12 12 H 1.48504 * 109.47051 * 330.00533 * 9 7 5 13 13 N 1.46498 * 109.47004 * 294.99816 * 3 2 1 14 14 C 1.34775 * 119.99968 * 85.00349 * 13 3 2 15 15 O 1.21280 * 119.99959 * 359.97438 * 14 13 3 16 16 C 1.50701 * 120.00198 * 179.97438 * 14 13 3 17 17 O 1.42891 * 109.47115 * 179.97438 * 16 14 13 18 18 C 1.42904 * 114.00067 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.47302 * 180.02562 * 18 17 16 20 20 N 1.30517 * 126.34522 * 269.95645 * 19 18 17 21 21 N 1.28600 * 109.67250 * 180.02562 * 20 19 18 22 22 C 1.30526 * 109.67197 * 359.72320 * 21 20 19 23 23 N 1.35494 * 107.30545 * 0.43817 * 22 21 20 24 24 C 1.46499 * 126.97935 * 179.83284 * 23 22 21 25 25 H 1.09005 * 109.47039 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47360 * 300.00013 * 1 2 3 27 27 H 1.08999 * 109.47426 * 60.00166 * 1 2 3 28 28 H 1.08999 * 109.47377 * 240.00493 * 2 1 3 29 29 H 1.08999 * 109.47426 * 119.99834 * 2 1 3 30 30 H 0.97004 * 119.99505 * 179.97438 * 8 7 5 31 31 H 0.96997 * 120.00048 * 264.99882 * 13 3 2 32 32 H 1.09002 * 109.47242 * 59.99715 * 16 14 13 33 33 H 1.09002 * 109.46655 * 299.99883 * 16 14 13 34 34 H 1.08995 * 109.46976 * 60.00094 * 18 17 16 35 35 H 1.09004 * 109.47058 * 300.00278 * 18 17 16 36 36 H 1.07996 * 126.34830 * 180.29376 * 22 21 20 37 37 H 1.09002 * 109.47391 * 269.68706 * 24 23 22 38 38 H 1.09001 * 109.46813 * 149.68762 * 24 23 22 39 39 H 1.09004 * 109.47041 * 29.68889 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8805 1.3362 9 14 3.0963 0.1100 2.5707 10 1 2.8744 -1.3260 2.2645 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6394 13 7 1.6523 2.0975 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3397 2.6319 -0.4344 16 6 0.0365 3.3386 -2.6545 17 8 -1.2891 3.8575 -2.5300 18 6 -1.7661 4.5210 -3.7023 19 6 -3.1651 5.0258 -3.4598 20 7 -4.2730 4.3761 -3.6919 21 7 -5.2799 5.1080 -3.3689 22 6 -4.8598 6.2557 -2.9106 23 7 -3.5059 6.2386 -2.9608 24 6 -2.5953 7.3112 -2.5526 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 5.8769 0.4827 2.1132 31 1 2.2718 2.1232 -1.9977 32 1 0.0679 2.6146 -3.4687 33 1 0.7279 4.1541 -2.8666 34 1 -1.7716 3.8219 -4.5385 35 1 -1.1122 5.3614 -3.9356 36 1 -5.4770 7.0691 -2.5589 37 1 -2.3955 7.9618 -3.4040 38 1 -1.6597 6.8783 -2.1986 39 1 -3.0533 7.8914 -1.7516 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347689274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:05 Heat of formation + Delta-G solvation = 9.367146 kcal Electronic energy + Delta-G solvation = -22016.036498 eV Core-core repulsion = 18575.235135 eV Total energy + Delta-G solvation = -3440.801363 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.33775 -39.46107 -37.76171 -35.36128 -35.21666 -32.47600 -31.94590 -31.52435 -28.66159 -28.01325 -27.28133 -26.03513 -22.67608 -22.63764 -21.27961 -20.93948 -19.66126 -17.79393 -17.28303 -17.17227 -16.48034 -16.20988 -16.08826 -15.48223 -15.20878 -14.91516 -14.45533 -14.06114 -13.77413 -13.43948 -13.26284 -12.93967 -12.73447 -12.17882 -12.08435 -11.86852 -11.71519 -11.70209 -11.09251 -10.91267 -10.64288 -10.60614 -10.47618 -9.98284 -9.93775 -9.61334 -9.54807 -9.26765 -9.10350 -8.78749 -8.11930 -6.24733 -4.27558 1.39927 2.16495 2.57154 3.13932 3.22499 3.24122 3.34202 3.39810 3.93092 4.19852 4.29092 4.31897 4.47969 4.55296 4.64458 4.83476 4.97238 5.05185 5.08921 5.20081 5.28082 5.29066 5.57603 5.84231 5.97260 6.03525 6.18334 6.50983 6.63915 6.68973 6.75910 6.83553 6.97030 7.24089 7.26941 7.47306 8.10545 8.46363 8.49053 8.71636 8.88476 9.36155 10.87165 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032551 B = 0.003344 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.977550 B = 8371.066409 C = 8588.461779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.139 4.139 3 C 0.245 3.755 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.699 5.699 14 C 0.502 3.498 15 O -0.528 6.528 16 C 0.043 3.957 17 O -0.355 6.355 18 C 0.148 3.852 19 C 0.179 3.821 20 N -0.272 5.272 21 N -0.298 5.298 22 C 0.153 3.847 23 N -0.468 5.468 24 C 0.069 3.931 25 H 0.032 0.968 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.268 0.732 31 H 0.395 0.605 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.221 0.779 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 12.831 -11.084 20.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.349 5.349 14 C 0.286 3.714 15 O -0.404 6.404 16 C -0.037 4.037 17 O -0.272 6.272 18 C 0.069 3.931 19 C -0.089 4.089 20 N -0.115 5.115 21 N -0.137 5.137 22 C -0.134 4.134 23 N -0.160 5.160 24 C -0.074 4.074 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.228 0.772 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.237 0.763 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.487 11.654 -10.518 20.696 hybrid contribution 0.942 0.726 0.641 1.351 sum -12.545 12.381 -9.877 20.204 Atomic orbital electron populations 1.21878 0.96806 0.99170 1.02334 1.22295 0.94423 0.99871 1.01167 1.19162 0.95607 0.88515 0.82561 0.93290 1.21033 0.88521 1.39942 1.07896 0.90154 1.24826 0.94871 0.95091 0.97677 1.69866 1.08689 1.44454 1.29851 0.86910 0.80963 0.80051 0.80875 1.20155 1.22137 1.18446 1.46059 1.14408 1.56227 1.18237 1.19952 0.82939 0.79860 0.88646 1.90717 1.51064 1.58593 1.40045 1.22371 0.84450 0.98841 0.98049 1.88101 1.29995 1.74574 1.34519 1.20498 0.85891 0.97071 0.89682 1.24318 0.98099 0.84012 1.02457 1.74273 0.94473 1.23809 1.18899 1.74291 1.22824 1.01320 1.15313 1.26486 0.81768 1.00978 1.04166 1.46185 1.08174 1.14659 1.46946 1.22199 0.94369 0.88807 1.02006 0.94873 0.92910 0.92891 0.92213 0.92743 0.92241 0.77158 0.90074 0.90276 0.89200 0.91131 0.76304 0.89746 0.88506 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.15 0.32 -2.66 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.66 1.83 -69.08 -0.13 5.54 16 4 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 5 C -0.54 -14.09 9.31 -34.44 -0.32 -14.41 16 6 H 0.08 2.20 7.98 -52.48 -0.42 1.78 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.99 13.96 55.43 0.77 -25.22 16 9 Si 0.88 21.58 24.41 -169.99 -4.15 17.43 16 10 H -0.27 -6.53 6.83 56.52 0.39 -6.15 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.70 -13.03 5.02 -54.93 -0.28 -13.31 16 14 C 0.50 9.05 6.48 -10.99 -0.07 8.98 16 15 O -0.53 -11.84 13.64 -14.35 -0.20 -12.04 16 16 C 0.04 0.53 6.42 36.01 0.23 0.76 16 17 O -0.36 -5.04 9.86 -55.14 -0.54 -5.59 16 18 C 0.15 1.49 6.11 36.00 0.22 1.71 16 19 C 0.18 2.22 7.66 -154.99 -1.19 1.03 16 20 N -0.27 -4.24 12.21 32.80 0.40 -3.84 16 21 N -0.30 -4.28 12.21 29.69 0.36 -3.91 16 22 C 0.15 1.50 12.74 -89.94 -1.15 0.36 16 23 N -0.47 -4.43 3.15 -122.69 -0.39 -4.82 16 24 C 0.07 0.33 10.89 59.85 0.65 0.98 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 27 H 0.05 1.08 5.64 -51.93 -0.29 0.78 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.27 3.22 -51.93 -0.17 1.10 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.40 6.22 8.54 -40.82 -0.35 5.87 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.46 7.85 -51.93 -0.41 0.05 16 36 H 0.22 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.10 0.52 7.81 -51.93 -0.41 0.12 16 39 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -37.28 324.32 -6.15 -43.43 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.36 Total: 1.80 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.67 Total: 1.18 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.87 Total: -51.10 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.74 Total: -17.63 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.15 Total: 17.43 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -37.28 -6.15 -43.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347689274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.795 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds