Wall clock time and date at job start Tue Mar 31 2020 05:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46851 * 2 1 4 4 H 1.08998 * 109.47399 * 305.28582 * 3 2 1 5 5 N 1.46504 * 109.47342 * 65.29233 * 3 2 1 6 6 C 1.38816 * 120.00028 * 206.06612 * 5 3 2 7 7 C 1.39796 * 119.58806 * 354.44579 * 6 5 3 8 8 C 1.38591 * 119.49416 * 179.97438 * 7 6 5 9 9 C 1.38384 * 118.68017 * 0.25875 * 8 7 6 10 10 C 1.40559 * 119.14739 * 359.48328 * 9 8 7 11 11 C 1.41325 * 119.78216 * 180.25231 * 10 9 8 12 12 H 1.07997 * 120.00328 * 0.26448 * 11 10 9 13 13 C 1.40026 * 119.99731 * 180.27438 * 11 10 9 14 14 N 1.30747 * 120.00117 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99952 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47503 * 59.99552 * 15 13 11 17 17 H 1.48503 * 109.47155 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47027 * 299.99788 * 15 13 11 19 19 N 1.31954 * 119.58081 * 174.42953 * 6 5 3 20 20 C 1.50704 * 109.46859 * 185.29131 * 3 2 1 21 21 C 1.38236 * 119.99872 * 279.72774 * 20 3 2 22 22 C 1.38237 * 120.00199 * 179.78862 * 21 20 3 23 23 C 1.38240 * 119.99559 * 0.43987 * 22 21 20 24 24 C 1.38235 * 120.00175 * 359.81388 * 23 22 21 25 25 C 1.38227 * 120.00237 * 100.00213 * 20 3 2 26 26 H 1.08995 * 109.47220 * 174.95037 * 1 2 3 27 27 H 1.09000 * 109.46734 * 294.95061 * 1 2 3 28 28 H 1.09001 * 109.47053 * 54.95002 * 1 2 3 29 29 H 1.09002 * 109.46716 * 240.00113 * 2 1 3 30 30 H 1.08992 * 109.47262 * 120.00296 * 2 1 3 31 31 H 0.97006 * 119.99770 * 26.06669 * 5 3 2 32 32 H 1.08001 * 120.24885 * 0.02776 * 7 6 5 33 33 H 1.08003 * 120.66119 * 179.97438 * 8 7 6 34 34 H 1.08002 * 120.42620 * 179.74341 * 9 8 7 35 35 H 0.96999 * 120.00091 * 180.02562 * 14 13 11 36 36 H 1.08005 * 119.99956 * 359.97438 * 21 20 3 37 37 H 1.07999 * 120.00414 * 180.27522 * 22 21 20 38 38 H 1.07995 * 119.99648 * 179.83424 * 23 22 21 39 39 H 1.07992 * 120.00186 * 179.97438 * 24 23 22 40 40 H 1.08002 * 120.00171 * 359.97438 * 25 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6014 1.9829 -0.8388 5 7 1.6584 2.0954 1.2548 6 6 1.5064 3.4744 1.3014 7 6 1.8318 4.2430 0.1799 8 6 1.6787 5.6196 0.2285 9 6 1.2101 6.1950 1.3965 10 6 0.8950 5.3680 2.4885 11 6 0.4103 5.9410 3.6861 12 1 0.2791 7.0105 3.7586 13 6 0.1004 5.1219 4.7787 14 7 0.2589 3.8270 4.6908 15 14 -0.5396 5.8791 6.3618 16 1 -1.8056 6.6049 6.0870 17 1 -0.7906 4.8064 7.3575 18 1 0.4683 6.8281 6.8993 19 7 1.0563 4.0432 2.4037 20 6 3.5413 1.4445 -0.1310 21 6 4.3322 1.2070 0.9776 22 6 5.7092 1.2045 0.8566 23 6 6.2956 1.4486 -0.3713 24 6 5.5048 1.6913 -1.4788 25 6 4.1277 1.6895 -1.3586 26 1 -0.3633 -1.0236 -0.0904 27 1 -0.3633 0.4335 0.9318 28 1 -0.3633 0.5902 -0.8413 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5120 1.5640 2.0530 32 1 2.1987 3.7676 -0.7177 33 1 1.9248 6.2316 -0.6268 34 1 1.0841 7.2653 1.4667 35 1 0.0439 3.2596 5.4476 36 1 3.8741 1.0204 1.9377 37 1 6.3270 1.0145 1.7218 38 1 7.3714 1.4493 -0.4653 39 1 5.9628 1.8823 -2.4380 40 1 3.5099 1.8790 -2.2239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348483691.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:29 Heat of formation + Delta-G solvation = 55.608619 kcal Electronic energy + Delta-G solvation = -21570.245207 eV Core-core repulsion = 18542.298288 eV Total energy + Delta-G solvation = -3027.946919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.46049 -38.03337 -36.09124 -33.53126 -32.05019 -30.86734 -30.62478 -30.14974 -28.40543 -25.51644 -25.29143 -22.47541 -22.00567 -21.39194 -20.99965 -19.70990 -17.34639 -16.74869 -16.29791 -15.33752 -15.11807 -14.79785 -14.36746 -14.22768 -13.75850 -13.63027 -13.29200 -13.15880 -12.77234 -12.58815 -12.41345 -12.06435 -11.80367 -11.75272 -11.21559 -11.02860 -10.98077 -10.88484 -10.77094 -10.71229 -10.52808 -10.31553 -9.88349 -9.47193 -8.88462 -8.67207 -8.45559 -7.86312 -7.46729 -6.49187 -6.29025 -4.42984 1.58932 1.65049 2.92417 3.11864 3.14859 3.28367 3.34062 3.97447 4.01009 4.26410 4.83776 4.94977 5.10864 5.14783 5.25761 5.29194 5.32887 5.55052 5.72855 5.79556 5.90546 5.93738 6.04778 6.11102 6.21228 6.22714 6.23345 6.30964 6.47978 6.63477 6.67891 6.73076 6.85005 6.90379 6.94908 7.04137 7.24005 7.29141 7.64863 7.85978 7.97413 8.19997 8.40749 8.72135 8.84341 9.16718 10.28654 10.44269 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.004813 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.781406 B = 5816.098590 C = 6068.484046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.202 3.798 4 H 0.084 0.916 5 N -0.727 5.727 6 C 0.414 3.586 7 C -0.361 4.361 8 C -0.033 4.033 9 C -0.317 4.317 10 C 0.293 3.707 11 C -0.436 4.436 12 H 0.081 0.919 13 C 0.073 3.927 14 N -0.717 5.717 15 Si 0.904 3.096 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.266 1.266 19 N -0.530 5.530 20 C -0.085 4.085 21 C -0.094 4.094 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.114 4.114 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.269 0.731 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.116 0.884 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -8.422 -7.508 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.095 3.905 4 H 0.102 0.898 5 N -0.362 5.362 6 C 0.174 3.826 7 C -0.387 4.387 8 C -0.057 4.057 9 C -0.341 4.341 10 C 0.166 3.834 11 C -0.468 4.468 12 H 0.099 0.901 13 C -0.152 4.152 14 N -0.339 5.339 15 Si 0.728 3.272 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.191 1.191 19 N -0.251 5.251 20 C -0.087 4.087 21 C -0.113 4.113 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.143 4.143 25 C -0.133 4.133 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.239 -9.114 -6.842 12.542 hybrid contribution 0.046 0.794 0.243 0.832 sum 5.284 -8.320 -6.599 11.861 Atomic orbital electron populations 1.21737 0.95063 1.00924 1.02927 1.21757 0.96557 0.95332 1.02409 1.19651 0.88863 0.92980 0.89042 0.89824 1.44143 1.77705 1.03985 1.10403 1.18484 0.89614 0.84020 0.90458 1.20627 1.24048 0.94240 0.99748 1.20587 0.95290 0.93898 0.95972 1.21522 1.17443 0.98691 0.96399 1.18178 0.87336 0.86378 0.91522 1.19528 1.37289 0.94541 0.95468 0.90059 1.26023 0.94434 0.94677 1.00088 1.70142 1.30107 1.04113 1.29529 0.86461 0.80114 0.79590 0.81006 1.19050 1.20388 1.19058 1.68209 1.22860 1.11894 1.22156 1.20569 0.96899 0.97887 0.93302 1.20959 0.93259 0.98564 0.98470 1.21113 0.95016 1.00690 0.97334 1.21048 0.99344 1.01145 0.93192 1.21029 0.93834 1.00985 0.98410 1.20971 0.94772 1.00410 0.97108 0.93124 0.91787 0.92776 0.91138 0.91577 0.77041 0.89197 0.89139 0.88857 0.91989 0.86223 0.86568 0.86715 0.86579 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.74 37.16 0.36 -1.54 16 2 C -0.12 -1.55 5.46 -26.73 -0.15 -1.70 16 3 C 0.20 3.16 1.85 -69.08 -0.13 3.03 16 4 H 0.08 1.37 6.50 -51.93 -0.34 1.03 16 5 N -0.73 -14.15 4.01 -55.03 -0.22 -14.37 16 6 C 0.41 10.01 7.62 -155.33 -1.18 8.83 16 7 C -0.36 -8.41 9.10 -38.87 -0.35 -8.76 16 8 C -0.03 -0.78 10.15 -39.40 -0.40 -1.18 16 9 C -0.32 -8.20 9.83 -38.65 -0.38 -8.58 16 10 C 0.29 8.24 6.55 -84.99 -0.56 7.69 16 11 C -0.44 -11.96 9.14 -37.74 -0.34 -12.30 16 12 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 13 C 0.07 1.87 5.50 -17.34 -0.10 1.78 16 14 N -0.72 -19.09 11.46 55.55 0.64 -18.46 16 15 Si 0.90 18.91 29.56 -169.99 -5.02 13.89 16 16 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 17 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 N -0.53 -14.61 7.89 -10.33 -0.08 -14.70 16 20 C -0.08 -1.30 4.53 -104.62 -0.47 -1.78 16 21 C -0.09 -1.48 9.33 -39.58 -0.37 -1.84 16 22 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 23 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 25 C -0.11 -1.60 9.67 -39.59 -0.38 -1.98 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.39 7.71 8.74 -40.82 -0.36 7.36 16 32 H 0.09 1.90 6.12 -52.49 -0.32 1.58 16 33 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 35 H 0.27 6.53 8.29 -40.82 -0.34 6.19 16 36 H 0.12 1.92 7.71 -52.48 -0.40 1.51 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 40 H 0.12 1.44 8.04 -52.49 -0.42 1.02 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -29.85 336.83 -10.86 -40.71 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.60 Total: 12.41 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: -5.64 Total: -24.56 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.33 Total: -47.53 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.85 -10.86 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348483691.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.319 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds