Wall clock time and date at job start Tue Mar 31 2020 07:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46789 * 2 1 4 4 C 1.50699 * 109.46727 * 240.00720 * 2 1 3 5 5 H 1.08002 * 119.99888 * 241.35627 * 4 2 1 6 6 C 1.37880 * 120.00563 * 61.35234 * 4 2 1 7 7 N 1.31512 * 120.00597 * 193.96482 * 6 4 2 8 8 Si 1.86801 * 119.99493 * 13.97020 * 6 4 2 9 9 H 1.48495 * 109.47403 * 84.55368 * 8 6 4 10 10 H 1.48505 * 109.46735 * 204.55403 * 8 6 4 11 11 H 1.48501 * 109.47133 * 324.54941 * 8 6 4 12 12 C 1.52993 * 109.47487 * 120.00717 * 2 1 3 13 13 O 1.45202 * 109.46962 * 299.99759 * 12 2 1 14 14 C 1.34224 * 117.00169 * 180.02562 * 13 12 2 15 15 O 1.20824 * 119.99853 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00184 * 180.02562 * 14 13 12 17 17 H 1.09006 * 109.64191 * 304.46377 * 16 14 13 18 18 O 1.42820 * 109.70339 * 183.93907 * 16 14 13 19 19 C 1.42876 * 110.66684 * 242.28547 * 18 16 14 20 20 C 1.54113 * 107.22032 * 341.91582 * 19 18 16 21 21 H 1.09001 * 112.58656 * 264.49947 * 20 19 18 22 22 C 1.53860 * 109.34549 * 138.68076 * 20 19 18 23 23 C 1.54201 * 106.80067 * 249.61370 * 22 20 19 24 24 C 1.54809 * 104.22374 * 23.64827 * 23 22 20 25 25 C 1.53550 * 109.70377 * 64.99369 * 16 14 13 26 26 H 1.08991 * 112.68039 * 256.72202 * 25 16 14 27 27 H 1.09007 * 109.46694 * 309.31148 * 1 2 3 28 28 H 1.08994 * 109.47603 * 69.31514 * 1 2 3 29 29 H 1.09008 * 109.47121 * 189.31842 * 1 2 3 30 30 H 1.09005 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47456 * 300.00399 * 3 2 1 32 32 H 1.09003 * 109.47384 * 60.00807 * 3 2 1 33 33 H 0.96993 * 120.00181 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47104 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.47613 * 59.99958 * 12 2 1 36 36 H 1.09004 * 109.88971 * 222.51912 * 19 18 16 37 37 H 1.09000 * 110.03075 * 101.39713 * 19 18 16 38 38 H 1.09005 * 109.99483 * 8.95334 * 22 20 19 39 39 H 1.09000 * 109.99763 * 130.27813 * 22 20 19 40 40 H 1.09000 * 110.48168 * 142.35180 * 23 22 20 41 41 H 1.08996 * 110.48336 * 264.86156 * 23 22 20 42 42 H 1.08993 * 110.76208 * 203.50639 * 24 23 22 43 43 H 1.09004 * 110.69157 * 80.19473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6349 -1.6010 -1.1318 6 6 1.7223 -0.2231 -2.4826 7 7 1.9159 -0.9720 -3.5462 8 14 1.0276 1.5010 -2.6682 9 1 2.1416 2.4820 -2.7081 10 1 0.2469 1.5870 -3.9286 11 1 0.1417 1.8044 -1.5157 12 6 2.0401 -0.7214 1.2491 13 8 1.5561 -0.0370 2.4347 14 6 1.9173 -0.5468 3.6227 15 8 2.6143 -1.5326 3.6703 16 6 1.4524 0.1096 4.8971 17 1 1.7462 1.1594 4.8968 18 8 2.0349 -0.5529 6.0202 19 6 1.0224 -1.1344 6.8436 20 6 -0.3108 -0.4541 6.4762 21 1 -0.5536 0.3764 7.1391 22 6 -1.4263 -1.5127 6.4258 23 6 -1.8282 -1.6665 4.9451 24 6 -0.5812 -1.1903 4.1610 25 6 -0.0750 -0.0003 5.0088 26 1 -0.5824 0.9336 4.7674 27 1 -0.3633 0.6511 0.7952 28 1 -0.3634 0.3630 -0.9613 29 1 -0.3634 -1.0142 0.1664 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6982 -0.6291 -4.4270 34 1 3.1301 -0.7209 1.2492 35 1 1.6768 -1.7490 1.2490 36 1 1.2518 -0.9573 7.8944 37 1 0.9566 -2.2058 6.6540 38 1 -1.0565 -2.4625 6.8123 39 1 -2.2829 -1.1797 7.0119 40 1 -2.0480 -2.7092 4.7159 41 1 -2.6881 -1.0370 4.7159 42 1 -0.8572 -0.8607 3.1594 43 1 0.1697 -1.9791 4.1158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357713663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:48 Heat of formation + Delta-G solvation = -127.468349 kcal Electronic energy + Delta-G solvation = -23787.291484 eV Core-core repulsion = 20411.804081 eV Total energy + Delta-G solvation = -3375.487403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.21027 -39.34742 -36.84056 -36.09999 -34.99613 -31.81434 -31.34577 -29.73846 -27.14513 -26.31602 -26.16215 -24.94871 -23.70127 -21.44389 -20.19768 -20.14371 -19.12493 -17.53286 -17.17729 -16.27273 -16.04236 -15.91530 -15.44929 -15.13375 -14.75134 -14.42375 -13.96551 -13.67260 -13.14145 -13.04902 -12.85714 -12.61570 -12.26645 -12.09083 -11.95198 -11.72377 -11.56343 -11.36814 -11.26828 -11.07944 -10.90156 -10.69769 -10.47107 -10.35251 -10.26992 -10.24437 -10.07100 -9.73590 -9.51787 -9.10344 -8.66045 -8.47545 -6.16735 -4.15011 2.50854 2.85826 3.26261 3.34556 3.39672 3.69549 3.91539 4.29974 4.35703 4.50476 4.76442 4.87743 4.97824 5.00597 5.14069 5.15164 5.17615 5.25421 5.36249 5.48128 5.52910 5.62222 5.73474 5.78713 5.83407 5.90114 5.96114 6.04317 6.12557 6.13823 6.27038 6.52500 6.56896 6.68487 6.72906 6.77125 6.86371 7.04803 7.21279 7.43308 7.69731 8.18869 8.41275 8.86009 9.46710 10.96055 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029217 B = 0.004557 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.102883 B = 6142.319599 C = 6426.058890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 C -0.146 4.146 4 C -0.519 4.519 5 H 0.075 0.925 6 C 0.079 3.921 7 N -0.890 5.890 8 Si 0.885 3.115 9 H -0.285 1.285 10 H -0.305 1.305 11 H -0.246 1.246 12 C 0.094 3.906 13 O -0.352 6.352 14 C 0.446 3.554 15 O -0.502 6.502 16 C 0.097 3.903 17 H 0.116 0.884 18 O -0.349 6.349 19 C 0.055 3.945 20 C -0.124 4.124 21 H 0.097 0.903 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.132 4.132 25 C -0.106 4.106 26 H 0.112 0.888 27 H 0.032 0.968 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.971 3.319 20.213 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 C -0.203 4.203 4 C -0.556 4.556 5 H 0.093 0.907 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.212 1.212 10 H -0.233 1.233 11 H -0.172 1.172 12 C 0.021 3.979 13 O -0.268 6.268 14 C 0.287 3.713 15 O -0.390 6.390 16 C 0.038 3.962 17 H 0.133 0.867 18 O -0.267 6.267 19 C -0.021 4.021 20 C -0.142 4.142 21 H 0.115 0.885 22 C -0.154 4.154 23 C -0.158 4.158 24 C -0.169 4.169 25 C -0.125 4.125 26 H 0.131 0.869 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.542 2.951 20.018 21.594 hybrid contribution -0.259 0.752 -0.423 0.900 sum -7.801 3.703 19.595 21.413 Atomic orbital electron populations 1.22220 0.97404 0.99780 1.00182 1.18575 0.93111 0.92566 0.91459 1.22291 1.00723 0.98155 0.99108 1.20666 1.34526 1.12447 0.87982 0.90664 1.24910 0.94523 0.97405 0.95591 1.69941 1.48016 1.35964 0.98739 0.87289 0.79526 0.85380 0.76082 1.21245 1.23343 1.17216 1.23398 0.98657 0.95706 0.80119 1.86471 1.69354 1.56234 1.14779 1.23743 0.77977 0.83143 0.86401 1.90654 1.35024 1.25301 1.87975 1.22018 0.93677 0.97030 0.83524 0.86673 1.88267 1.31499 1.72495 1.34449 1.23386 0.86142 0.97539 0.95063 1.23227 0.96041 0.98752 0.96199 0.88486 1.22173 0.97506 0.98232 0.97474 1.22336 0.97805 1.01673 0.94029 1.22724 0.97961 0.96640 0.99612 1.23179 0.92594 1.01143 0.95544 0.86943 0.94938 0.92743 0.93853 0.93192 0.94212 0.94070 0.92461 0.91880 0.91811 0.89650 0.91696 0.91206 0.91354 0.91249 0.91157 0.89576 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 7.58 37.16 0.28 -2.66 16 2 C 0.04 1.00 0.58 -155.67 -0.09 0.91 16 3 C -0.15 -3.14 7.55 37.16 0.28 -2.86 16 4 C -0.52 -14.17 8.62 -34.44 -0.30 -14.47 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.21 5.32 -17.82 -0.09 2.11 16 7 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 8 Si 0.88 21.38 22.79 -169.99 -3.87 17.50 16 9 H -0.28 -6.85 7.10 56.52 0.40 -6.45 16 10 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 11 H -0.25 -5.47 4.65 56.52 0.26 -5.21 16 12 C 0.09 1.97 4.25 37.15 0.16 2.13 16 13 O -0.35 -6.40 8.64 -39.24 -0.34 -6.74 16 14 C 0.45 7.72 5.04 36.01 0.18 7.90 16 15 O -0.50 -10.38 16.11 -25.43 -0.41 -10.79 16 16 C 0.10 1.28 3.99 -27.60 -0.11 1.17 16 17 H 0.12 1.28 8.14 -51.93 -0.42 0.86 16 18 O -0.35 -4.89 10.47 -55.04 -0.58 -5.46 16 19 C 0.06 0.56 7.18 37.74 0.27 0.83 16 20 C -0.12 -1.04 4.02 -88.32 -0.36 -1.40 16 21 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 22 C -0.12 -0.89 6.36 -25.65 -0.16 -1.06 16 23 C -0.12 -1.10 6.82 -25.15 -0.17 -1.27 16 24 C -0.13 -1.57 4.94 -24.92 -0.12 -1.70 16 25 C -0.11 -1.11 3.78 -88.21 -0.33 -1.44 16 26 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.03 0.60 7.94 -51.93 -0.41 0.19 16 28 H 0.05 1.21 4.30 -51.93 -0.22 0.99 16 29 H 0.04 0.89 8.12 -51.92 -0.42 0.46 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.89 2.25 -51.93 -0.12 0.77 16 32 H 0.04 0.78 7.68 -51.93 -0.40 0.38 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 35 H 0.06 1.37 8.13 -51.93 -0.42 0.95 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.69 7.30 -51.93 -0.38 0.31 16 38 H 0.07 0.52 7.23 -51.93 -0.38 0.15 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.12 7.99 -51.93 -0.41 0.71 16 43 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 LS Contribution 324.08 15.07 4.88 4.88 Total: -1.00 -31.52 324.08 -7.12 -38.64 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.01 Total: -0.28 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -0.57 Total: -11.81 kcal Atomic # 7 Polarization: -26.71 SS G_CDS: 0.77 Total: -25.94 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.32 Total: -22.99 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -3.87 Total: 17.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.52 -7.12 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357713663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.826 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds