Wall clock time and date at job start Tue Mar 31 2020 07:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46789 * 2 1 4 4 C 1.50699 * 109.46727 * 240.00720 * 2 1 3 5 5 H 1.08002 * 119.99888 * 241.35627 * 4 2 1 6 6 C 1.37880 * 120.00563 * 61.35234 * 4 2 1 7 7 N 1.31512 * 120.00597 * 193.96482 * 6 4 2 8 8 Si 1.86801 * 119.99493 * 13.97020 * 6 4 2 9 9 H 1.48495 * 109.47403 * 84.55368 * 8 6 4 10 10 H 1.48505 * 109.46735 * 204.55403 * 8 6 4 11 11 H 1.48501 * 109.47133 * 324.54941 * 8 6 4 12 12 C 1.52993 * 109.47487 * 120.00717 * 2 1 3 13 13 O 1.45202 * 109.46962 * 299.99759 * 12 2 1 14 14 C 1.34224 * 117.00169 * 180.02562 * 13 12 2 15 15 O 1.20824 * 119.99853 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00184 * 180.02562 * 14 13 12 17 17 H 1.09006 * 109.64191 * 304.46377 * 16 14 13 18 18 O 1.42820 * 109.70339 * 183.93907 * 16 14 13 19 19 C 1.42876 * 110.66684 * 242.28547 * 18 16 14 20 20 C 1.54113 * 107.22032 * 341.91582 * 19 18 16 21 21 H 1.09001 * 112.58656 * 264.49947 * 20 19 18 22 22 C 1.53860 * 109.34549 * 138.68076 * 20 19 18 23 23 C 1.54201 * 106.80067 * 249.61370 * 22 20 19 24 24 C 1.54809 * 104.22374 * 23.64827 * 23 22 20 25 25 C 1.53550 * 109.70377 * 64.99369 * 16 14 13 26 26 H 1.08991 * 112.68039 * 256.72202 * 25 16 14 27 27 H 1.09007 * 109.46694 * 309.31148 * 1 2 3 28 28 H 1.08994 * 109.47603 * 69.31514 * 1 2 3 29 29 H 1.09008 * 109.47121 * 189.31842 * 1 2 3 30 30 H 1.09005 * 109.47023 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47456 * 300.00399 * 3 2 1 32 32 H 1.09003 * 109.47384 * 60.00807 * 3 2 1 33 33 H 0.96993 * 120.00181 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47104 * 180.02562 * 12 2 1 35 35 H 1.08997 * 109.47613 * 59.99958 * 12 2 1 36 36 H 1.09004 * 109.88971 * 222.51912 * 19 18 16 37 37 H 1.09000 * 110.03075 * 101.39713 * 19 18 16 38 38 H 1.09005 * 109.99483 * 8.95334 * 22 20 19 39 39 H 1.09000 * 109.99763 * 130.27813 * 22 20 19 40 40 H 1.09000 * 110.48168 * 142.35180 * 23 22 20 41 41 H 1.08996 * 110.48336 * 264.86156 * 23 22 20 42 42 H 1.08993 * 110.76208 * 203.50639 * 24 23 22 43 43 H 1.09004 * 110.69157 * 80.19473 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6349 -1.6010 -1.1318 6 6 1.7223 -0.2231 -2.4826 7 7 1.9159 -0.9720 -3.5462 8 14 1.0276 1.5010 -2.6682 9 1 2.1416 2.4820 -2.7081 10 1 0.2469 1.5870 -3.9286 11 1 0.1417 1.8044 -1.5157 12 6 2.0401 -0.7214 1.2491 13 8 1.5561 -0.0370 2.4347 14 6 1.9173 -0.5468 3.6227 15 8 2.6143 -1.5326 3.6703 16 6 1.4524 0.1096 4.8971 17 1 1.7462 1.1594 4.8968 18 8 2.0349 -0.5529 6.0202 19 6 1.0224 -1.1344 6.8436 20 6 -0.3108 -0.4541 6.4762 21 1 -0.5536 0.3764 7.1391 22 6 -1.4263 -1.5127 6.4258 23 6 -1.8282 -1.6665 4.9451 24 6 -0.5812 -1.1903 4.1610 25 6 -0.0750 -0.0003 5.0088 26 1 -0.5824 0.9336 4.7674 27 1 -0.3633 0.6511 0.7952 28 1 -0.3634 0.3630 -0.9613 29 1 -0.3634 -1.0142 0.1664 30 1 3.1300 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6982 -0.6291 -4.4270 34 1 3.1301 -0.7209 1.2492 35 1 1.6768 -1.7490 1.2490 36 1 1.2518 -0.9573 7.8944 37 1 0.9566 -2.2058 6.6540 38 1 -1.0565 -2.4625 6.8123 39 1 -2.2829 -1.1797 7.0119 40 1 -2.0480 -2.7092 4.7159 41 1 -2.6881 -1.0370 4.7159 42 1 -0.8572 -0.8607 3.1594 43 1 0.1697 -1.9791 4.1158 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357713663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:47 Heat of formation + Delta-G solvation = -146.936725 kcal Electronic energy + Delta-G solvation = -23788.135696 eV Core-core repulsion = 20411.804081 eV Total energy + Delta-G solvation = -3376.331615 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.29890 -40.62739 -38.46707 -37.10435 -36.60182 -33.87871 -32.32290 -30.52898 -28.37422 -27.97676 -27.48614 -27.00024 -24.80831 -22.39277 -21.38579 -20.97395 -20.87029 -18.79438 -18.27551 -17.96362 -17.51095 -17.33465 -17.12266 -16.42072 -15.64044 -15.30685 -15.28176 -14.97607 -14.82387 -14.56055 -14.13058 -14.06712 -13.78504 -13.69868 -13.36771 -13.19579 -12.64129 -12.43976 -12.27052 -12.10424 -12.00220 -11.98989 -11.94817 -11.83508 -11.71706 -11.48520 -11.43731 -11.29781 -11.09246 -10.64459 -10.62841 -10.40390 -8.34527 -6.37673 1.14552 1.36771 1.37514 1.50535 1.53169 2.32523 2.78822 3.01579 3.12512 3.48079 3.60524 3.80422 4.01636 4.02536 4.07987 4.12008 4.24988 4.36331 4.38617 4.43302 4.48011 4.56527 4.62796 4.68200 4.78616 4.79109 4.82642 4.92596 4.94370 5.04617 5.10092 5.13931 5.14967 5.21652 5.28189 5.43032 5.43173 5.49804 5.65868 5.72964 5.83801 6.23809 6.64962 6.74812 7.27644 8.82354 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029217 B = 0.004557 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.102883 B = 6142.319599 C = 6426.058890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.040 3.960 3 C -0.145 4.145 4 C -0.526 4.526 5 H 0.027 0.973 6 C 0.023 3.977 7 N -0.942 5.942 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.310 1.310 11 H -0.206 1.206 12 C 0.107 3.893 13 O -0.340 6.340 14 C 0.443 3.557 15 O -0.545 6.545 16 C 0.099 3.901 17 H 0.145 0.855 18 O -0.375 6.375 19 C 0.044 3.956 20 C -0.110 4.110 21 H 0.130 0.870 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.139 4.139 25 C -0.102 4.102 26 H 0.142 0.858 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.037 0.963 32 H 0.074 0.926 33 H 0.267 0.733 34 H 0.046 0.954 35 H 0.045 0.955 36 H 0.111 0.889 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 6.477 23.076 26.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 C -0.201 4.201 4 C -0.563 4.563 5 H 0.046 0.954 6 C -0.175 4.175 7 N -0.581 5.581 8 Si 0.772 3.228 9 H -0.206 1.206 10 H -0.239 1.239 11 H -0.130 1.130 12 C 0.033 3.967 13 O -0.256 6.256 14 C 0.287 3.713 15 O -0.435 6.435 16 C 0.040 3.960 17 H 0.163 0.837 18 O -0.294 6.294 19 C -0.031 4.031 20 C -0.128 4.128 21 H 0.148 0.852 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.176 4.176 25 C -0.120 4.120 26 H 0.160 0.840 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.985 6.112 22.926 25.743 hybrid contribution 0.586 -0.414 -1.257 1.447 sum -9.399 5.698 21.669 24.297 Atomic orbital electron populations 1.22137 0.95613 1.00518 1.00914 1.18515 0.94423 0.93317 0.89822 1.22240 1.00620 0.96745 1.00505 1.20928 1.33644 1.11293 0.90451 0.95418 1.25787 0.95098 1.01664 0.94960 1.70088 1.50249 1.38294 0.99462 0.86338 0.79629 0.79776 0.77103 1.20639 1.23893 1.12994 1.22928 0.97510 0.94941 0.81332 1.86454 1.69132 1.55593 1.14448 1.24914 0.76704 0.82542 0.87093 1.90637 1.37155 1.27395 1.88334 1.22334 0.95500 0.97415 0.80792 0.83748 1.88253 1.33585 1.72791 1.34731 1.23654 0.86796 0.96854 0.95842 1.23270 0.94875 0.99539 0.95096 0.85214 1.22184 0.98207 0.98159 0.96528 1.22344 0.96915 1.01585 0.94693 1.22691 0.98497 0.96577 0.99869 1.23323 0.90416 1.01637 0.96646 0.83975 0.91504 0.93498 0.94249 0.93675 0.94489 0.90672 0.92398 0.93522 0.93614 0.87098 0.93263 0.91498 0.88757 0.91902 0.89503 0.90990 0.94646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.43 7.58 71.98 0.55 -4.89 16 2 C 0.04 1.81 0.58 -52.93 -0.03 1.78 16 3 C -0.14 -5.84 7.55 71.98 0.54 -5.29 16 4 C -0.53 -29.74 8.62 25.60 0.22 -29.52 16 5 H 0.03 1.77 7.99 -2.91 -0.02 1.74 16 6 C 0.02 1.32 5.32 84.66 0.45 1.77 16 7 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 8 Si 0.94 43.28 22.79 68.60 1.56 44.84 16 9 H -0.28 -12.53 7.10 99.48 0.71 -11.82 16 10 H -0.31 -14.42 7.11 99.48 0.71 -13.72 16 11 H -0.21 -8.15 4.65 99.48 0.46 -7.69 16 12 C 0.11 4.58 4.25 71.98 0.31 4.89 16 13 O -0.34 -12.02 8.64 -51.36 -0.44 -12.46 16 14 C 0.44 15.21 5.04 71.24 0.36 15.57 16 15 O -0.55 -23.40 16.11 28.36 0.46 -22.94 16 16 C 0.10 2.37 3.99 30.03 0.12 2.49 16 17 H 0.15 2.65 8.14 -2.38 -0.02 2.63 16 18 O -0.37 -9.91 10.47 -130.04 -1.36 -11.27 16 19 C 0.04 0.80 7.18 72.36 0.52 1.32 16 20 C -0.11 -1.40 4.02 -9.30 -0.04 -1.43 16 21 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 22 C -0.11 -1.34 6.36 31.29 0.20 -1.14 16 23 C -0.12 -1.87 6.82 31.62 0.22 -1.65 16 24 C -0.14 -3.13 4.94 31.77 0.16 -2.97 16 25 C -0.10 -1.78 3.78 -9.23 -0.03 -1.81 16 26 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.07 2.24 7.94 -2.38 -0.02 2.22 16 28 H 0.05 1.95 4.30 -2.39 -0.01 1.94 16 29 H 0.04 1.58 8.12 -2.38 -0.02 1.56 16 30 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.04 1.52 2.25 -2.39 -0.01 1.51 16 32 H 0.07 2.53 7.68 -2.39 -0.02 2.51 16 33 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 34 H 0.05 2.12 8.13 -2.39 -0.02 2.10 16 35 H 0.05 2.09 8.13 -2.39 -0.02 2.07 16 36 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 1.03 7.30 -2.39 -0.02 1.01 16 38 H 0.07 0.85 7.23 -2.38 -0.02 0.83 16 39 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.79 7.99 -2.39 -0.02 1.77 16 43 H 0.03 1.05 6.73 -2.38 -0.02 1.03 16 Total: -1.00 -72.80 324.08 4.79 -68.00 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.75 Total: 13.15 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.53 Total: -20.91 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: 0.30 Total: -58.40 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -1.35 Total: -46.68 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.56 Total: 44.84 kcal Total: -72.80 4.79 -68.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357713663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.932 kcal (2) G-P(sol) polarization free energy of solvation -72.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds