Wall clock time and date at job start Tue Mar 31 2020 05:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 119.99855 * 2 1 4 4 O 1.21286 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.50699 * 109.46720 * 180.02562 * 5 3 2 7 7 N 1.29943 * 126.29379 * 90.02497 * 6 5 3 8 8 O 1.21297 * 110.25398 * 179.97438 * 7 6 5 9 9 C 1.33636 * 109.81281 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.55118 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47433 * 269.96999 * 10 9 8 12 12 C 1.46901 * 111.00085 * 66.04451 * 11 10 9 13 13 C 1.46893 * 111.00356 * 190.00257 * 11 10 9 14 14 H 1.09002 * 109.47426 * 54.99517 * 13 11 10 15 15 C 1.53006 * 109.46900 * 294.99765 * 13 11 10 16 16 C 1.50703 * 109.47508 * 175.00016 * 13 11 10 17 17 H 1.08002 * 120.00125 * 114.92671 * 16 13 11 18 18 C 1.37872 * 119.99644 * 294.92972 * 16 13 11 19 19 N 1.31516 * 119.99807 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 120.00332 * 359.95626 * 18 16 13 21 21 H 1.48500 * 109.47055 * 84.86273 * 20 18 16 22 22 H 1.48498 * 109.47242 * 204.86443 * 20 18 16 23 23 H 1.48500 * 109.46672 * 324.86630 * 20 18 16 24 24 N 1.31125 * 106.89654 * 359.76067 * 9 8 7 25 25 H 1.08999 * 109.47174 * 59.99577 * 1 2 3 26 26 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47134 * 299.99876 * 1 2 3 28 28 H 0.96993 * 120.00026 * 179.72905 * 2 1 3 29 29 H 1.09004 * 109.46673 * 299.99357 * 5 3 2 30 30 H 1.08998 * 109.47066 * 59.99803 * 5 3 2 31 31 H 1.08997 * 109.47238 * 29.97345 * 10 9 8 32 32 H 1.09008 * 109.47119 * 149.96697 * 10 9 8 33 33 H 1.09004 * 109.46741 * 59.99590 * 12 11 10 34 34 H 1.08995 * 109.47358 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.46978 * 300.00786 * 12 11 10 36 36 H 1.09001 * 109.47015 * 175.21177 * 15 13 11 37 37 H 1.08994 * 109.47017 * 295.21491 * 15 13 11 38 38 H 1.09000 * 109.47042 * 55.21795 * 15 13 11 39 39 H 0.96998 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1482 2.5880 0.0002 7 7 4.4054 3.3124 1.0479 8 8 4.7941 4.4116 0.7133 9 6 4.8222 4.4956 -0.6201 10 6 5.2437 5.6909 -1.4353 11 7 4.0749 6.5406 -1.6993 12 6 3.5606 7.1296 -0.4556 13 6 4.3936 7.5836 -2.6833 14 1 4.7897 7.1213 -3.5875 15 6 5.4386 8.5353 -2.0973 16 6 3.1438 8.3556 -3.0198 17 1 3.0684 9.4011 -2.7596 18 6 2.0968 7.7272 -3.6598 19 7 1.0059 8.4007 -3.9531 20 14 2.2277 5.9191 -4.1109 21 1 1.8312 5.0883 -2.9456 22 1 1.3276 5.6281 -5.2555 23 1 3.6285 5.6038 -4.4899 24 7 4.4172 3.3378 -1.0835 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 0.0040 29 1 4.0095 0.6532 0.8893 30 1 4.0089 0.6536 -0.8908 31 1 5.9908 6.2617 -0.8838 32 1 5.6691 5.3542 -2.3808 33 1 4.3379 7.7381 0.0067 34 1 2.6954 7.7534 -0.6797 35 1 3.2669 6.3339 0.2289 36 1 5.7378 9.2582 -2.8563 37 1 5.0127 9.0609 -1.2428 38 1 6.3098 7.9647 -1.7756 39 1 0.2691 7.9585 -4.4030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473272272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:55 Heat of formation + Delta-G solvation = 46.505636 kcal Electronic energy + Delta-G solvation = -22767.457151 eV Core-core repulsion = 19328.266234 eV Total energy + Delta-G solvation = -3439.190917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.30330 -39.78189 -37.64066 -35.75572 -34.77277 -33.34962 -32.13769 -30.52148 -29.60320 -27.44021 -26.65116 -25.54060 -24.27917 -23.09460 -21.54883 -20.52941 -19.26033 -18.10444 -17.46975 -17.05411 -16.78002 -16.14194 -15.70160 -15.13235 -14.77243 -14.24631 -14.05839 -13.93078 -13.65810 -13.44686 -12.95556 -12.78594 -12.50157 -12.39760 -12.15263 -11.93708 -11.48953 -11.39747 -11.13119 -11.08651 -10.76155 -10.60958 -10.41285 -10.16668 -9.98351 -9.71478 -9.60233 -9.37829 -9.08976 -8.51115 -7.42590 -6.02133 -4.10242 1.39526 2.33292 2.45413 3.02430 3.13926 3.58751 3.64802 3.72752 3.82998 4.14471 4.55267 4.65442 4.79685 4.88208 4.98029 5.00543 5.29880 5.39983 5.47362 5.57195 5.60942 5.75136 5.96670 6.06623 6.11762 6.20586 6.21446 6.26661 6.29561 6.44873 6.74457 6.97603 7.16472 7.17671 7.58144 7.88253 8.01358 8.06102 8.41328 8.54322 8.97506 9.62217 11.06868 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.005789 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.833282 B = 4835.736618 C = 5947.870924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.737 5.737 3 C 0.513 3.487 4 O -0.514 6.514 5 C -0.045 4.045 6 C 0.179 3.821 7 N -0.383 5.383 8 O 0.075 5.925 9 C 0.212 3.788 10 C 0.132 3.868 11 N -0.531 5.531 12 C 0.033 3.967 13 C 0.172 3.828 14 H 0.050 0.950 15 C -0.166 4.166 16 C -0.513 4.513 17 H 0.074 0.926 18 C 0.086 3.914 19 N -0.895 5.895 20 Si 0.913 3.087 21 H -0.268 1.268 22 H -0.312 1.312 23 H -0.272 1.272 24 N -0.469 5.469 25 H 0.062 0.938 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.402 0.598 29 H 0.119 0.881 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.022 0.978 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.031 0.969 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.995 -17.369 8.236 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.390 5.390 3 C 0.297 3.703 4 O -0.387 6.387 5 C -0.087 4.087 6 C -0.094 4.094 7 N -0.091 5.091 8 O 0.016 5.984 9 C -0.009 4.009 10 C 0.002 3.998 11 N -0.258 5.258 12 C -0.114 4.114 13 C 0.068 3.932 14 H 0.068 0.932 15 C -0.225 4.225 16 C -0.551 4.551 17 H 0.092 0.908 18 C -0.119 4.119 19 N -0.531 5.531 20 Si 0.743 3.257 21 H -0.193 1.193 22 H -0.241 1.241 23 H -0.197 1.197 24 N -0.203 5.203 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.235 0.765 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.086 0.914 32 H 0.129 0.871 33 H 0.041 0.959 34 H 0.109 0.891 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.797 -17.468 8.461 20.256 hybrid contribution 0.613 -0.826 0.084 1.032 sum 6.410 -18.294 8.545 21.184 Atomic orbital electron populations 1.21550 0.79162 1.02162 1.02730 1.45667 1.07951 1.08283 1.77124 1.20300 0.89337 0.84072 0.76568 1.90846 1.69927 1.31068 1.46903 1.19794 0.92842 0.89327 1.06715 1.24753 1.01391 0.98806 0.84467 1.74494 1.17658 0.93041 1.23896 1.85259 1.60880 1.26789 1.25473 1.29004 0.94101 0.96529 0.81270 1.20738 0.94697 0.87375 0.96983 1.62891 1.27138 1.23905 1.11852 1.22223 1.00960 0.98295 0.89969 1.19957 0.95681 0.87506 0.90036 0.93213 1.22316 0.98225 1.00555 1.01401 1.20821 0.98716 0.97132 1.38480 0.90755 1.25023 0.94568 0.98609 0.93662 1.69944 1.05590 1.37166 1.40442 0.86256 0.77353 0.84970 0.77137 1.19284 1.24069 1.19721 1.71843 1.17221 1.02512 1.28690 0.91967 0.90536 0.92159 0.76455 0.86250 0.85680 0.91415 0.87063 0.95912 0.89071 0.94208 0.92667 0.92928 0.95041 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.70 59.85 0.64 1.42 16 2 N -0.74 -6.81 5.71 -67.07 -0.38 -7.20 16 3 C 0.51 7.20 7.82 -10.98 -0.09 7.11 16 4 O -0.51 -10.45 16.03 5.55 0.09 -10.36 16 5 C -0.05 -0.53 6.33 -29.04 -0.18 -0.71 16 6 C 0.18 3.06 6.71 -156.37 -1.05 2.01 16 7 N -0.38 -6.85 12.16 30.89 0.38 -6.47 16 8 O 0.07 1.34 10.73 18.12 0.19 1.54 16 9 C 0.21 3.91 7.07 -13.06 -0.09 3.82 16 10 C 0.13 2.30 5.04 -4.98 -0.03 2.28 16 11 N -0.53 -11.43 2.78 -237.73 -0.66 -12.09 16 12 C 0.03 0.69 8.62 60.07 0.52 1.21 16 13 C 0.17 3.85 1.70 -68.86 -0.12 3.74 16 14 H 0.05 1.14 6.80 -51.93 -0.35 0.79 16 15 C -0.17 -3.08 8.40 37.16 0.31 -2.77 16 16 C -0.51 -14.01 7.76 -34.44 -0.27 -14.27 16 17 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 18 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 19 N -0.89 -27.63 13.96 55.43 0.77 -26.85 16 20 Si 0.91 24.41 26.26 -169.99 -4.46 19.95 16 21 H -0.27 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.31 -8.40 7.11 56.52 0.40 -8.00 16 23 H -0.27 -6.90 6.52 56.52 0.37 -6.53 16 24 N -0.47 -9.06 11.55 -9.87 -0.11 -9.18 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.40 1.99 8.83 -40.82 -0.36 1.63 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.99 6.83 -51.93 -0.35 0.63 16 32 H 0.11 1.83 8.00 -51.92 -0.42 1.42 16 33 H 0.02 0.41 6.62 -51.93 -0.34 0.07 16 34 H 0.09 2.13 6.99 -51.93 -0.36 1.77 16 35 H 0.04 0.81 6.83 -51.93 -0.35 0.46 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.98 6.75 -51.93 -0.35 0.63 16 38 H 0.03 0.48 6.53 -51.93 -0.34 0.15 16 39 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 324.86 15.07 4.90 4.90 Total: -1.00 -37.29 324.86 -5.10 -42.39 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -5.36 Total: -2.88 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.45 Total: 6.26 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.01 Total: -61.79 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.28 Total: -8.82 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -4.46 Total: 19.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -37.29 -5.10 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473272272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.894 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds