Wall clock time and date at job start Tue Mar 31 2020 05:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34779 * 119.99855 * 2 1 4 4 O 1.21286 * 119.99866 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99751 * 180.02562 * 3 2 1 6 6 C 1.50699 * 109.46720 * 180.02562 * 5 3 2 7 7 N 1.29943 * 126.29379 * 90.02497 * 6 5 3 8 8 O 1.21297 * 110.25398 * 179.97438 * 7 6 5 9 9 C 1.33636 * 109.81281 * 0.02562 * 8 7 6 10 10 C 1.50700 * 126.55118 * 179.97438 * 9 8 7 11 11 N 1.46896 * 109.47433 * 269.96999 * 10 9 8 12 12 C 1.46901 * 111.00085 * 66.04451 * 11 10 9 13 13 C 1.46893 * 111.00356 * 190.00257 * 11 10 9 14 14 H 1.09002 * 109.47426 * 54.99517 * 13 11 10 15 15 C 1.53006 * 109.46900 * 294.99765 * 13 11 10 16 16 C 1.50703 * 109.47508 * 175.00016 * 13 11 10 17 17 H 1.08002 * 120.00125 * 114.92671 * 16 13 11 18 18 C 1.37872 * 119.99644 * 294.92972 * 16 13 11 19 19 N 1.31516 * 119.99807 * 179.97438 * 18 16 13 20 20 Si 1.86805 * 120.00332 * 359.95626 * 18 16 13 21 21 H 1.48500 * 109.47055 * 84.86273 * 20 18 16 22 22 H 1.48498 * 109.47242 * 204.86443 * 20 18 16 23 23 H 1.48500 * 109.46672 * 324.86630 * 20 18 16 24 24 N 1.31125 * 106.89654 * 359.76067 * 9 8 7 25 25 H 1.08999 * 109.47174 * 59.99577 * 1 2 3 26 26 H 1.08998 * 109.47082 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47134 * 299.99876 * 1 2 3 28 28 H 0.96993 * 120.00026 * 179.72905 * 2 1 3 29 29 H 1.09004 * 109.46673 * 299.99357 * 5 3 2 30 30 H 1.08998 * 109.47066 * 59.99803 * 5 3 2 31 31 H 1.08997 * 109.47238 * 29.97345 * 10 9 8 32 32 H 1.09008 * 109.47119 * 149.96697 * 10 9 8 33 33 H 1.09004 * 109.46741 * 59.99590 * 12 11 10 34 34 H 1.08995 * 109.47358 * 180.02562 * 12 11 10 35 35 H 1.08998 * 109.46978 * 300.00786 * 12 11 10 36 36 H 1.09001 * 109.47015 * 175.21177 * 15 13 11 37 37 H 1.08994 * 109.47017 * 295.21491 * 15 13 11 38 38 H 1.09000 * 109.47042 * 55.21795 * 15 13 11 39 39 H 0.96998 * 120.00009 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1482 2.5880 0.0002 7 7 4.4054 3.3124 1.0479 8 8 4.7941 4.4116 0.7133 9 6 4.8222 4.4956 -0.6201 10 6 5.2437 5.6909 -1.4353 11 7 4.0749 6.5406 -1.6993 12 6 3.5606 7.1296 -0.4556 13 6 4.3936 7.5836 -2.6833 14 1 4.7897 7.1213 -3.5875 15 6 5.4386 8.5353 -2.0973 16 6 3.1438 8.3556 -3.0198 17 1 3.0684 9.4011 -2.7596 18 6 2.0968 7.7272 -3.6598 19 7 1.0059 8.4007 -3.9531 20 14 2.2277 5.9191 -4.1109 21 1 1.8312 5.0883 -2.9456 22 1 1.3276 5.6281 -5.2555 23 1 3.6285 5.6038 -4.4899 24 7 4.4172 3.3378 -1.0835 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8400 0.0040 29 1 4.0095 0.6532 0.8893 30 1 4.0089 0.6536 -0.8908 31 1 5.9908 6.2617 -0.8838 32 1 5.6691 5.3542 -2.3808 33 1 4.3379 7.7381 0.0067 34 1 2.6954 7.7534 -0.6797 35 1 3.2669 6.3339 0.2289 36 1 5.7378 9.2582 -2.8563 37 1 5.0127 9.0609 -1.2428 38 1 6.3098 7.9647 -1.7756 39 1 0.2691 7.9585 -4.4030 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473272272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:54 Heat of formation + Delta-G solvation = 14.406667 kcal Electronic energy + Delta-G solvation = -22768.849067 eV Core-core repulsion = 19328.266234 eV Total energy + Delta-G solvation = -3440.582833 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.63290 -40.85429 -39.29811 -37.04833 -35.77773 -34.97773 -33.99047 -31.82769 -31.06216 -28.95478 -27.51946 -27.40043 -25.91871 -24.46113 -22.85354 -21.65106 -20.98678 -19.37946 -18.93970 -18.62079 -18.18442 -17.17561 -16.90536 -16.60653 -16.42100 -15.91652 -15.62524 -14.99587 -14.94527 -14.71649 -14.53435 -14.24146 -14.06683 -13.47025 -13.21006 -13.17377 -13.15954 -12.87454 -12.80075 -12.68591 -12.53722 -12.26712 -12.07364 -11.83125 -11.68399 -11.43511 -11.14550 -10.88513 -10.77289 -10.28564 -9.04259 -8.27536 -6.34871 0.04702 1.05956 1.40120 1.42444 1.51300 1.63253 1.76161 2.15812 2.45465 2.61237 2.92842 3.00433 3.50605 3.66302 3.87493 4.13477 4.18841 4.39022 4.39305 4.40924 4.45758 4.52978 4.62717 4.64539 4.72049 4.81463 4.83733 4.87787 4.93897 5.14830 5.28760 5.33366 5.51537 5.64728 6.01066 6.33740 6.39967 6.49202 6.80268 7.07645 7.12595 7.39754 8.85332 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.005789 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.833282 B = 4835.736618 C = 5947.870924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.712 5.712 3 C 0.507 3.493 4 O -0.590 6.590 5 C -0.044 4.044 6 C 0.176 3.824 7 N -0.396 5.396 8 O 0.070 5.930 9 C 0.206 3.794 10 C 0.134 3.866 11 N -0.559 5.559 12 C 0.045 3.955 13 C 0.175 3.825 14 H 0.053 0.947 15 C -0.158 4.158 16 C -0.501 4.501 17 H 0.043 0.957 18 C 0.037 3.963 19 N -0.944 5.944 20 Si 0.968 3.032 21 H -0.299 1.299 22 H -0.319 1.319 23 H -0.244 1.244 24 N -0.496 5.496 25 H 0.039 0.961 26 H 0.123 0.877 27 H 0.045 0.955 28 H 0.427 0.573 29 H 0.161 0.839 30 H 0.159 0.841 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.654 -20.042 8.836 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.366 5.366 3 C 0.293 3.707 4 O -0.470 6.470 5 C -0.085 4.085 6 C -0.097 4.097 7 N -0.106 5.106 8 O 0.014 5.986 9 C -0.015 4.015 10 C 0.005 3.995 11 N -0.286 5.286 12 C -0.103 4.103 13 C 0.070 3.930 14 H 0.071 0.929 15 C -0.217 4.217 16 C -0.539 4.539 17 H 0.061 0.939 18 C -0.162 4.162 19 N -0.584 5.584 20 Si 0.799 3.201 21 H -0.226 1.226 22 H -0.248 1.248 23 H -0.168 1.168 24 N -0.230 5.230 25 H 0.058 0.942 26 H 0.141 0.859 27 H 0.064 0.936 28 H 0.265 0.735 29 H 0.179 0.821 30 H 0.176 0.824 31 H 0.125 0.875 32 H 0.144 0.856 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.510 -20.201 9.063 23.720 hybrid contribution -0.212 -0.060 -0.003 0.220 sum 8.298 -20.261 9.061 23.695 Atomic orbital electron populations 1.21679 0.78821 1.04600 1.00957 1.45531 1.08273 1.08174 1.74579 1.20798 0.90387 0.84078 0.75475 1.90823 1.71465 1.33836 1.50896 1.20142 0.90987 0.87018 1.10319 1.25617 1.00103 1.00486 0.83518 1.74470 1.18463 0.93221 1.24465 1.85228 1.61050 1.27052 1.25299 1.29153 0.94023 0.96783 0.81548 1.20867 0.93539 0.86679 0.98400 1.62409 1.29927 1.24145 1.12119 1.22046 1.00466 0.97861 0.89879 1.19793 0.94139 0.88135 0.90892 0.92870 1.22201 0.98301 1.00109 1.01078 1.21159 1.00164 0.96264 1.36361 0.93906 1.25648 0.94677 1.01316 0.94606 1.70056 1.06713 1.38507 1.43116 0.85378 0.78418 0.81095 0.75248 1.22647 1.24795 1.16759 1.71847 1.17834 1.03365 1.29946 0.94248 0.85883 0.93570 0.73510 0.82123 0.82380 0.87510 0.85605 0.92858 0.92869 0.94619 0.92431 0.93438 0.90990 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.70 127.77 1.37 2.72 16 2 N -0.71 -11.42 5.71 -484.50 -2.77 -14.19 16 3 C 0.51 13.50 7.82 87.66 0.69 14.19 16 4 O -0.59 -24.42 16.03 -3.05 -0.05 -24.47 16 5 C -0.04 -0.90 6.33 29.10 0.18 -0.71 16 6 C 0.18 5.71 6.71 138.46 0.93 6.63 16 7 N -0.40 -13.63 12.16 -60.34 -0.73 -14.36 16 8 O 0.07 2.41 10.73 74.90 0.80 3.22 16 9 C 0.21 7.19 7.07 88.38 0.62 7.82 16 10 C 0.13 4.24 5.04 85.56 0.43 4.67 16 11 N -0.56 -23.11 2.78 -906.04 -2.52 -25.63 16 12 C 0.05 1.85 8.62 127.69 1.10 2.95 16 13 C 0.18 7.51 1.70 44.17 0.08 7.59 16 14 H 0.05 2.28 6.80 -2.39 -0.02 2.26 16 15 C -0.16 -5.35 8.40 71.98 0.60 -4.74 16 16 C -0.50 -27.64 7.76 25.60 0.20 -27.44 16 17 H 0.04 2.59 7.99 -2.91 -0.02 2.56 16 18 C 0.04 2.21 5.47 84.65 0.46 2.67 16 19 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 20 Si 0.97 51.47 26.26 68.60 1.80 53.27 16 21 H -0.30 -17.41 7.11 99.48 0.71 -16.71 16 22 H -0.32 -17.07 7.11 99.48 0.71 -16.36 16 23 H -0.24 -11.67 6.52 99.48 0.65 -11.02 16 24 N -0.50 -18.30 11.55 -303.22 -3.50 -21.80 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.43 2.53 8.83 -92.71 -0.82 1.72 16 29 H 0.16 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.11 2.56 6.83 -2.39 -0.02 2.55 16 32 H 0.13 3.64 8.00 -2.38 -0.02 3.62 16 33 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 34 H 0.05 2.54 6.99 -2.39 -0.02 2.53 16 35 H 0.04 1.45 6.83 -2.39 -0.02 1.44 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.05 1.65 6.75 -2.39 -0.02 1.63 16 38 H 0.07 1.86 6.53 -2.39 -0.02 1.85 16 39 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -86.45 324.86 0.20 -86.26 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: 0.20 Total: 1.54 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.66 Total: 16.35 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -9.23 Total: -136.16 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.75 Total: -21.26 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.80 Total: 53.27 kcal Total: -86.45 0.20 -86.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473272272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.666 kcal (2) G-P(sol) polarization free energy of solvation -86.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds