Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34768 * 120.00183 * 2 1 4 4 O 1.21285 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47458 * 180.02562 * 5 3 2 7 7 N 1.29945 * 126.28624 * 270.02630 * 6 5 3 8 8 O 1.21309 * 110.25051 * 179.68125 * 7 6 5 9 9 C 1.33641 * 109.80823 * 0.46701 * 8 7 6 10 10 C 1.50699 * 126.54978 * 179.80039 * 9 8 7 11 11 N 1.46904 * 109.47221 * 269.68862 * 10 9 8 12 12 C 1.46896 * 110.99663 * 293.95397 * 11 10 9 13 13 C 1.46894 * 110.99915 * 170.00202 * 11 10 9 14 14 H 1.09002 * 109.47104 * 309.99793 * 13 11 10 15 15 C 1.52997 * 109.47515 * 70.00061 * 13 11 10 16 16 C 1.50708 * 109.46991 * 190.00244 * 13 11 10 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99779 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00284 * 0.02562 * 18 16 13 21 21 H 1.48498 * 109.47308 * 89.99617 * 20 18 16 22 22 H 1.48501 * 109.47369 * 209.99691 * 20 18 16 23 23 H 1.48502 * 109.47235 * 329.99860 * 20 18 16 24 24 N 1.31133 * 106.89890 * 359.54085 * 9 8 7 25 25 H 1.08999 * 109.47440 * 60.00343 * 1 2 3 26 26 H 1.09003 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47083 * 299.99559 * 1 2 3 28 28 H 0.97004 * 120.00262 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47041 * 60.00335 * 5 3 2 30 30 H 1.08999 * 109.46771 * 299.99754 * 5 3 2 31 31 H 1.08999 * 109.47292 * 149.68905 * 10 9 8 32 32 H 1.08998 * 109.46979 * 29.68839 * 10 9 8 33 33 H 1.08998 * 109.47503 * 296.04235 * 12 11 10 34 34 H 1.09007 * 109.47634 * 56.04710 * 12 11 10 35 35 H 1.09003 * 109.46925 * 176.04443 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99762 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99953 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.96999 * 119.99874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1482 2.5880 0.0002 7 7 4.4037 3.3139 -1.0469 8 8 4.7867 4.4149 -0.7112 9 6 4.8223 4.4949 0.6223 10 6 5.2447 5.6890 1.4388 11 7 6.6880 5.6158 1.7030 12 6 7.0076 4.4712 2.5666 13 6 7.1804 6.8701 2.2878 14 1 6.8383 7.7111 1.6846 15 6 6.6439 7.0135 3.7134 16 6 8.6871 6.8531 2.3173 17 1 9.2249 5.9960 1.9398 18 6 9.3788 7.9318 2.8262 19 7 10.6936 7.9167 2.8524 20 14 8.4486 9.4139 3.4797 21 1 8.1710 9.2257 4.9264 22 1 9.2686 10.6370 3.2881 23 1 7.1664 9.5574 2.7443 24 7 4.4139 3.3377 1.0847 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 4.0088 0.6536 -0.8908 30 1 4.0095 0.6532 0.8892 31 1 4.7021 5.6933 2.3841 32 1 5.0221 6.6029 0.8880 33 1 6.5399 4.6097 3.5413 34 1 6.6317 3.5555 2.1101 35 1 8.0883 4.3991 2.6890 36 1 6.9860 6.1725 4.3166 37 1 5.5542 7.0258 3.6920 38 1 7.0097 7.9441 4.1475 39 1 11.1803 8.6754 3.2108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473272276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = 55.073554 kcal Electronic energy + Delta-G solvation = -22091.640004 eV Core-core repulsion = 18652.820619 eV Total energy + Delta-G solvation = -3438.819385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.35895 -39.94907 -37.78320 -35.81437 -34.93837 -33.53205 -32.31450 -30.58550 -29.73361 -27.56791 -26.78168 -25.35775 -24.37149 -23.38085 -21.67940 -20.65716 -19.48974 -18.20442 -17.44436 -17.17498 -16.66006 -16.28368 -15.91235 -15.52169 -14.66532 -14.43132 -14.30694 -14.10221 -13.83107 -13.58575 -13.24669 -12.68004 -12.64260 -12.46537 -12.24289 -12.18757 -11.73021 -11.46610 -11.30611 -11.25849 -10.92970 -10.82726 -10.42399 -10.33321 -10.08549 -9.81088 -9.55285 -9.52326 -9.14956 -8.62370 -7.59884 -6.09906 -4.09111 1.34474 2.23266 2.27668 2.89569 3.05609 3.23671 3.33157 3.36838 3.63875 4.06931 4.36011 4.40880 4.69674 4.80587 4.88506 4.95923 5.12267 5.21329 5.29323 5.41018 5.51645 5.64249 5.90386 5.94912 5.96820 6.12386 6.15458 6.21616 6.22706 6.43945 6.61736 6.82184 7.01604 7.06923 7.49904 7.72728 7.82584 7.85682 8.34842 8.57181 8.97747 9.50671 11.03030 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042842 B = 0.003253 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.408041 B = 8605.253086 C = 8716.461800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.736 5.736 3 C 0.519 3.481 4 O -0.525 6.525 5 C -0.047 4.047 6 C 0.179 3.821 7 N -0.380 5.380 8 O 0.088 5.912 9 C 0.217 3.783 10 C 0.133 3.867 11 N -0.518 5.518 12 C 0.028 3.972 13 C 0.184 3.816 14 H 0.046 0.954 15 C -0.190 4.190 16 C -0.503 4.503 17 H 0.083 0.917 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.886 3.114 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.267 1.267 24 N -0.479 5.479 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.404 0.596 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.048 0.952 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.136 -15.470 -3.651 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.389 5.389 3 C 0.304 3.696 4 O -0.400 6.400 5 C -0.088 4.088 6 C -0.095 4.095 7 N -0.087 5.087 8 O 0.028 5.972 9 C -0.004 4.004 10 C 0.003 3.997 11 N -0.243 5.243 12 C -0.120 4.120 13 C 0.077 3.923 14 H 0.063 0.937 15 C -0.249 4.249 16 C -0.541 4.541 17 H 0.101 0.899 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.207 1.207 22 H -0.224 1.224 23 H -0.192 1.192 24 N -0.214 5.214 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.238 0.762 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.394 -15.252 -4.574 23.582 hybrid contribution -0.544 0.613 1.299 1.536 sum -17.939 -14.639 -3.275 23.385 Atomic orbital electron populations 1.21548 0.79198 1.02307 1.02540 1.45688 1.07968 1.08451 1.76771 1.20297 0.89353 0.83928 0.76058 1.90768 1.70122 1.31250 1.47838 1.19799 0.92512 0.89479 1.06996 1.24673 1.01453 0.98860 0.84487 1.74547 1.17287 0.92921 1.23939 1.85290 1.60371 1.26360 1.25143 1.28810 0.93401 0.96485 0.81679 1.20656 0.92855 0.89898 0.96274 1.62236 1.07689 1.06108 1.48221 1.22389 1.03049 0.92130 0.94419 1.19851 0.96927 0.86480 0.89052 0.93658 1.22873 0.98014 1.01839 1.02169 1.20856 0.87699 1.04784 1.40777 0.89886 1.24900 0.94737 0.97968 0.95506 1.69871 1.06097 1.31340 1.46248 0.86898 0.79762 0.82489 0.79239 1.20721 1.22364 1.19183 1.71839 1.18413 1.02121 1.28985 0.92165 0.90457 0.92085 0.76242 0.86095 0.85577 0.90425 0.87421 0.95430 0.93180 0.89861 0.92059 0.95091 0.93334 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.70 59.84 0.64 1.19 16 2 N -0.74 -5.09 5.71 -67.08 -0.38 -5.48 16 3 C 0.52 5.85 7.82 -10.99 -0.09 5.77 16 4 O -0.52 -8.61 16.03 5.55 0.09 -8.52 16 5 C -0.05 -0.46 6.33 -29.03 -0.18 -0.65 16 6 C 0.18 2.74 6.71 -156.37 -1.05 1.69 16 7 N -0.38 -6.44 12.16 30.90 0.38 -6.07 16 8 O 0.09 1.53 11.31 18.10 0.20 1.73 16 9 C 0.22 3.68 7.13 -13.05 -0.09 3.58 16 10 C 0.13 2.19 5.16 -4.97 -0.03 2.16 16 11 N -0.52 -10.25 4.69 -237.73 -1.12 -11.36 16 12 C 0.03 0.53 8.64 60.06 0.52 1.05 16 13 C 0.18 4.08 1.90 -68.87 -0.13 3.95 16 14 H 0.05 1.02 6.99 -51.93 -0.36 0.66 16 15 C -0.19 -3.88 7.92 37.16 0.29 -3.58 16 16 C -0.50 -13.51 8.55 -34.44 -0.29 -13.81 16 17 H 0.08 2.46 7.35 -52.49 -0.39 2.07 16 18 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 19 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 20 Si 0.89 21.10 24.37 -169.99 -4.14 16.96 16 21 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 22 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 24 N -0.48 -8.02 10.74 -9.86 -0.11 -8.13 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.40 1.28 8.83 -40.82 -0.36 0.92 16 29 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.20 7.06 -51.93 -0.37 0.83 16 32 H 0.11 1.58 7.93 -51.93 -0.41 1.17 16 33 H 0.03 0.49 6.21 -51.93 -0.32 0.17 16 34 H 0.05 0.89 6.55 -51.93 -0.34 0.55 16 35 H 0.08 1.72 6.86 -51.93 -0.36 1.36 16 36 H 0.06 1.24 6.33 -51.93 -0.33 0.91 16 37 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 38 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -34.69 319.10 -5.06 -39.75 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -5.06 Total: -0.95 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.51 Total: 3.23 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.46 Total: -57.01 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: 0.29 Total: -6.79 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.69 -5.06 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473272276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.828 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds