Wall clock time and date at job start Tue Mar 31 2020 05:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34768 * 120.00183 * 2 1 4 4 O 1.21285 * 119.99901 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00374 * 180.02562 * 3 2 1 6 6 C 1.50700 * 109.47458 * 180.02562 * 5 3 2 7 7 N 1.29945 * 126.28624 * 270.02630 * 6 5 3 8 8 O 1.21309 * 110.25051 * 179.68125 * 7 6 5 9 9 C 1.33641 * 109.80823 * 0.46701 * 8 7 6 10 10 C 1.50699 * 126.54978 * 179.80039 * 9 8 7 11 11 N 1.46904 * 109.47221 * 269.68862 * 10 9 8 12 12 C 1.46896 * 110.99663 * 293.95397 * 11 10 9 13 13 C 1.46894 * 110.99915 * 170.00202 * 11 10 9 14 14 H 1.09002 * 109.47104 * 309.99793 * 13 11 10 15 15 C 1.52997 * 109.47515 * 70.00061 * 13 11 10 16 16 C 1.50708 * 109.46991 * 190.00244 * 13 11 10 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31516 * 119.99779 * 179.97438 * 18 16 13 20 20 Si 1.86795 * 120.00284 * 0.02562 * 18 16 13 21 21 H 1.48498 * 109.47308 * 89.99617 * 20 18 16 22 22 H 1.48501 * 109.47369 * 209.99691 * 20 18 16 23 23 H 1.48502 * 109.47235 * 329.99860 * 20 18 16 24 24 N 1.31133 * 106.89890 * 359.54085 * 9 8 7 25 25 H 1.08999 * 109.47440 * 60.00343 * 1 2 3 26 26 H 1.09003 * 109.47384 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47083 * 299.99559 * 1 2 3 28 28 H 0.97004 * 120.00262 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47041 * 60.00335 * 5 3 2 30 30 H 1.08999 * 109.46771 * 299.99754 * 5 3 2 31 31 H 1.08999 * 109.47292 * 149.68905 * 10 9 8 32 32 H 1.08998 * 109.46979 * 29.68839 * 10 9 8 33 33 H 1.08998 * 109.47503 * 296.04235 * 12 11 10 34 34 H 1.09007 * 109.47634 * 56.04710 * 12 11 10 35 35 H 1.09003 * 109.46925 * 176.04443 * 12 11 10 36 36 H 1.09002 * 109.47153 * 59.99762 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99953 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.96999 * 119.99874 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1671 0.0000 4 8 1.5324 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 6 4.1482 2.5880 0.0002 7 7 4.4037 3.3139 -1.0469 8 8 4.7867 4.4149 -0.7112 9 6 4.8223 4.4949 0.6223 10 6 5.2447 5.6890 1.4388 11 7 6.6880 5.6158 1.7030 12 6 7.0076 4.4712 2.5666 13 6 7.1804 6.8701 2.2878 14 1 6.8383 7.7111 1.6846 15 6 6.6439 7.0135 3.7134 16 6 8.6871 6.8531 2.3173 17 1 9.2249 5.9960 1.9398 18 6 9.3788 7.9318 2.8262 19 7 10.6936 7.9167 2.8524 20 14 8.4486 9.4139 3.4797 21 1 8.1710 9.2257 4.9264 22 1 9.2686 10.6370 3.2881 23 1 7.1664 9.5574 2.7443 24 7 4.4139 3.3377 1.0847 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.9500 -0.8401 -0.0004 29 1 4.0088 0.6536 -0.8908 30 1 4.0095 0.6532 0.8892 31 1 4.7021 5.6933 2.3841 32 1 5.0221 6.6029 0.8880 33 1 6.5399 4.6097 3.5413 34 1 6.6317 3.5555 2.1101 35 1 8.0883 4.3991 2.6890 36 1 6.9860 6.1725 4.3166 37 1 5.5542 7.0258 3.6920 38 1 7.0097 7.9441 4.1475 39 1 11.1803 8.6754 3.2108 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473272276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:59 Heat of formation + Delta-G solvation = 24.317803 kcal Electronic energy + Delta-G solvation = -22092.973673 eV Core-core repulsion = 18652.820619 eV Total energy + Delta-G solvation = -3440.153054 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.59868 -40.79845 -39.35989 -37.00421 -35.71247 -35.11453 -33.98895 -31.80860 -31.16178 -28.96701 -27.44907 -27.19568 -25.99596 -24.59887 -22.85719 -21.62635 -21.11690 -19.33042 -18.76786 -18.45750 -18.14267 -17.31678 -17.09630 -16.60925 -16.24176 -15.94647 -15.77982 -14.98684 -14.90352 -14.80415 -14.42776 -14.22034 -13.97342 -13.66594 -13.31894 -13.19706 -13.10613 -12.99669 -12.89314 -12.64202 -12.52035 -12.20507 -12.07489 -11.86906 -11.46467 -11.32468 -11.10556 -10.91041 -10.70986 -10.23028 -9.13814 -8.23086 -6.26663 0.07720 1.08763 1.36500 1.42389 1.45902 1.52055 1.78707 2.14761 2.37122 2.61985 2.96119 3.11168 3.26444 3.69006 3.89966 4.14378 4.18147 4.35281 4.39567 4.44839 4.47676 4.57963 4.59527 4.63511 4.64881 4.73910 4.82274 4.89758 4.93281 5.01874 5.21262 5.33237 5.43537 5.63607 5.94878 6.21491 6.42903 6.59846 6.79737 7.09568 7.13561 7.37472 8.93790 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.042842 B = 0.003253 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.408041 B = 8605.253086 C = 8716.461800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.516 3.484 4 O -0.586 6.586 5 C -0.047 4.047 6 C 0.181 3.819 7 N -0.400 5.400 8 O 0.070 5.930 9 C 0.211 3.789 10 C 0.137 3.863 11 N -0.536 5.536 12 C 0.039 3.961 13 C 0.187 3.813 14 H 0.051 0.949 15 C -0.186 4.186 16 C -0.502 4.502 17 H 0.037 0.963 18 C 0.011 3.989 19 N -0.951 5.951 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.304 1.304 23 H -0.238 1.238 24 N -0.489 5.489 25 H 0.046 0.954 26 H 0.118 0.882 27 H 0.047 0.953 28 H 0.425 0.575 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.040 0.960 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.040 0.960 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.717 -16.504 -3.129 25.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.367 5.367 3 C 0.302 3.698 4 O -0.466 6.466 5 C -0.088 4.088 6 C -0.093 4.093 7 N -0.110 5.110 8 O 0.015 5.985 9 C -0.010 4.010 10 C 0.007 3.993 11 N -0.261 5.261 12 C -0.109 4.109 13 C 0.080 3.920 14 H 0.069 0.931 15 C -0.245 4.245 16 C -0.541 4.541 17 H 0.055 0.945 18 C -0.186 4.186 19 N -0.592 5.592 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.232 1.232 23 H -0.162 1.162 24 N -0.224 5.224 25 H 0.065 0.935 26 H 0.136 0.864 27 H 0.066 0.934 28 H 0.263 0.737 29 H 0.170 0.830 30 H 0.174 0.826 31 H 0.114 0.886 32 H 0.145 0.855 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.994 -16.349 -4.062 26.145 hybrid contribution 0.246 0.728 1.064 1.313 sum -19.748 -15.621 -2.998 25.357 Atomic orbital electron populations 1.21693 0.78526 1.04545 1.01256 1.45577 1.08455 1.08223 1.74460 1.20530 0.89803 0.84121 0.75388 1.90747 1.71231 1.33487 1.51111 1.20131 0.91731 0.86924 1.10009 1.25566 0.99725 1.00463 0.83565 1.74538 1.18545 0.93085 1.24822 1.85260 1.60939 1.26910 1.25411 1.28913 0.93548 0.96839 0.81698 1.20731 0.90538 0.90686 0.97325 1.62014 1.10408 1.05255 1.48409 1.22237 1.01182 0.92383 0.95107 1.19648 0.93786 0.87791 0.90769 0.93105 1.22755 1.00396 1.01223 1.00109 1.21110 0.90569 1.03032 1.39364 0.94483 1.25772 0.95412 1.01362 0.96031 1.70041 1.08227 1.32560 1.48350 0.85860 0.79291 0.77874 0.79360 1.19487 1.23178 1.16179 1.71852 1.18632 1.02260 1.29658 0.93470 0.86406 0.93444 0.73732 0.82952 0.82570 0.88575 0.85547 0.94163 0.92211 0.92890 0.92403 0.91280 0.94149 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.70 127.77 1.37 2.22 16 2 N -0.71 -7.92 5.71 -484.54 -2.77 -10.69 16 3 C 0.52 10.67 7.82 87.66 0.69 11.35 16 4 O -0.59 -18.94 16.03 -3.04 -0.05 -18.99 16 5 C -0.05 -0.82 6.33 29.10 0.18 -0.63 16 6 C 0.18 5.27 6.71 138.46 0.93 6.20 16 7 N -0.40 -13.27 12.16 -60.29 -0.73 -14.01 16 8 O 0.07 2.41 11.31 74.84 0.85 3.26 16 9 C 0.21 6.88 7.13 88.38 0.63 7.51 16 10 C 0.14 4.18 5.16 85.56 0.44 4.62 16 11 N -0.54 -20.64 4.69 -906.04 -4.25 -24.89 16 12 C 0.04 1.45 8.64 127.69 1.10 2.55 16 13 C 0.19 8.06 1.90 44.17 0.08 8.15 16 14 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 15 C -0.19 -7.03 7.92 71.98 0.57 -6.46 16 16 C -0.50 -27.52 8.55 25.60 0.22 -27.30 16 17 H 0.04 2.31 7.35 -2.91 -0.02 2.29 16 18 C 0.01 0.63 5.45 84.65 0.46 1.09 16 19 N -0.95 -58.60 13.96 21.45 0.30 -58.30 16 20 Si 0.95 42.86 24.37 68.60 1.67 44.53 16 21 H -0.27 -11.57 6.87 99.48 0.68 -10.89 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.24 -9.59 6.53 99.48 0.65 -8.94 16 24 N -0.49 -15.62 10.74 -303.17 -3.26 -18.87 16 25 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.42 1.08 8.83 -92.71 -0.82 0.26 16 29 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.16 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.10 2.62 7.06 -2.39 -0.02 2.60 16 32 H 0.13 3.37 7.93 -2.39 -0.02 3.35 16 33 H 0.04 1.37 6.21 -2.39 -0.01 1.36 16 34 H 0.06 2.07 6.55 -2.38 -0.02 2.05 16 35 H 0.05 2.26 6.86 -2.39 -0.02 2.24 16 36 H 0.06 2.20 6.33 -2.39 -0.02 2.19 16 37 H 0.07 2.08 6.91 -2.39 -0.02 2.07 16 38 H 0.04 1.59 3.27 -2.38 -0.01 1.59 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.92 319.10 -1.37 -80.29 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.19 Total: 8.37 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 6.68 Total: 9.30 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -10.71 Total: -126.75 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.80 Total: -15.74 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.67 Total: 44.53 kcal Total: -78.92 -1.37 -80.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473272276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.609 kcal (2) G-P(sol) polarization free energy of solvation -78.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds