Wall clock time and date at job start Tue Mar 31 2020 05:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30274 * 126.28672 * 2 1 4 4 N 1.28667 * 109.38502 * 179.97438 * 3 2 1 5 5 C 1.30279 * 109.38163 * 359.97438 * 4 3 2 6 6 C 1.50692 * 126.28313 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47060 * 89.98331 * 6 5 4 8 8 C 1.34778 * 119.99964 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00067 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00013 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99990 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46879 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47121 * 300.00338 * 12 11 10 14 14 C 1.52994 * 109.47102 * 60.00604 * 12 11 10 15 15 C 1.50703 * 109.46696 * 180.02562 * 12 11 10 16 16 H 1.08000 * 120.00333 * 1.35050 * 15 12 11 17 17 C 1.37875 * 119.99587 * 181.34655 * 15 12 11 18 18 N 1.31518 * 120.00076 * 193.98112 * 17 15 12 19 19 Si 1.86803 * 120.00361 * 13.98000 * 17 15 12 20 20 H 1.48497 * 109.47018 * 84.54279 * 19 17 15 21 21 H 1.48493 * 109.47238 * 204.54911 * 19 17 15 22 22 H 1.48496 * 109.46813 * 324.54562 * 19 17 15 23 23 O 1.34365 * 107.43098 * 0.02562 * 5 4 3 24 24 H 1.08993 * 109.47486 * 90.02528 * 1 2 3 25 25 H 1.09007 * 109.47342 * 210.02805 * 1 2 3 26 26 H 1.09000 * 109.47505 * 330.02533 * 1 2 3 27 27 H 1.08997 * 109.47031 * 209.98024 * 6 5 4 28 28 H 1.08998 * 109.47021 * 329.98029 * 6 5 4 29 29 H 0.97002 * 120.00024 * 359.97438 * 7 6 5 30 30 H 0.97004 * 119.99917 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47451 * 300.00907 * 11 10 8 32 32 H 1.08997 * 109.47121 * 60.00858 * 11 10 8 33 33 H 1.08996 * 109.47625 * 69.36890 * 13 12 11 34 34 H 1.09001 * 109.47120 * 189.37148 * 13 12 11 35 35 H 1.09007 * 109.47286 * 309.36744 * 13 12 11 36 36 H 1.09002 * 109.47099 * 59.99636 * 14 12 11 37 37 H 1.08997 * 109.47063 * 179.97438 * 14 12 11 38 38 H 1.09002 * 109.47015 * 299.99520 * 14 12 11 39 39 H 0.96999 * 120.00417 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6760 0.0005 5 6 3.5654 -0.6256 0.0015 6 6 4.8176 -1.4639 0.0029 7 7 5.2226 -1.7343 1.3846 8 6 6.3239 -2.4709 1.6321 9 8 6.9814 -2.9105 0.7087 10 7 6.6968 -2.7192 2.9032 11 6 7.8935 -3.5203 3.1722 12 6 8.0903 -3.6512 4.6839 13 6 8.2587 -2.2603 5.2986 14 6 6.8689 -4.3365 5.2997 15 6 9.3217 -4.4747 4.9606 16 1 9.9177 -4.8472 4.1407 17 6 9.6874 -4.7524 6.2607 18 7 10.8873 -5.2244 6.5197 19 14 8.4786 -4.4583 7.6542 20 1 7.5870 -5.6377 7.7932 21 1 9.2248 -4.2497 8.9210 22 1 7.6631 -3.2537 7.3560 23 8 2.3020 -1.0831 0.0009 24 1 -0.3634 -0.0005 -1.0276 25 1 -0.3634 -0.8898 0.5143 26 1 -0.3634 0.8902 0.5134 27 1 4.6246 -2.4060 -0.5101 28 1 5.6148 -0.9270 -0.5111 29 1 4.6987 -1.3826 2.1213 30 1 6.1724 -2.3681 3.6399 31 1 7.7734 -4.5113 2.7346 32 1 8.7636 -3.0323 2.7332 33 1 7.3122 -1.7225 5.2455 34 1 8.5631 -2.3580 6.3407 35 1 9.0210 -1.7094 4.7476 36 1 6.7489 -5.3274 4.8617 37 1 7.0093 -4.4301 6.3766 38 1 5.9785 -3.7405 5.0996 39 1 11.1445 -5.4202 7.4343 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477425850.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:16 Heat of formation + Delta-G solvation = 25.807515 kcal Electronic energy + Delta-G solvation = -21804.811934 eV Core-core repulsion = 18364.723478 eV Total energy + Delta-G solvation = -3440.088455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.66362 -39.87254 -37.02534 -36.59474 -35.28029 -33.46141 -33.03449 -31.51748 -29.66023 -27.08378 -26.40955 -25.58015 -24.71751 -23.17787 -22.70871 -20.92102 -19.25811 -18.61807 -17.88797 -17.37195 -16.25348 -16.08030 -15.72723 -15.37875 -15.10735 -14.72898 -14.14355 -13.85688 -13.75456 -13.69647 -13.25487 -13.02645 -12.86881 -12.80986 -12.62369 -12.25571 -12.23276 -12.06270 -11.41161 -11.31694 -10.45507 -10.37082 -10.21490 -10.19140 -10.08541 -9.85469 -9.36186 -9.15426 -8.70799 -8.53272 -8.44024 -6.16094 -4.13524 0.60335 1.74002 1.89342 2.87725 3.22557 3.29405 3.33889 3.37362 3.38050 3.91856 4.34038 4.38673 4.43757 4.72281 4.79463 4.84735 5.02912 5.14535 5.20302 5.25334 5.31476 5.72176 6.01903 6.05056 6.15177 6.31610 6.39745 6.50949 6.59458 6.67746 6.76514 6.91267 7.02671 7.20503 7.41205 7.70784 7.86074 8.14532 8.43975 8.74847 8.89632 9.47634 10.96968 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032814 B = 0.003130 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.080711 B = 8944.650309 C = 9386.259447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.168 3.832 3 N -0.290 5.290 4 N -0.262 5.262 5 C 0.148 3.852 6 C 0.243 3.757 7 N -0.753 5.753 8 C 0.706 3.294 9 O -0.589 6.589 10 N -0.733 5.733 11 C 0.159 3.841 12 C 0.029 3.971 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.513 4.513 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.891 5.891 19 Si 0.885 3.115 20 H -0.286 1.286 21 H -0.305 1.305 22 H -0.250 1.250 23 O -0.219 6.219 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.398 0.602 30 H 0.393 0.607 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.028 0.972 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.397 8.984 -10.166 25.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 N -0.138 5.138 4 N -0.110 5.110 5 C -0.064 4.064 6 C 0.117 3.883 7 N -0.412 5.412 8 C 0.406 3.594 9 O -0.467 6.467 10 N -0.388 5.388 11 C 0.037 3.963 12 C 0.027 3.973 13 C -0.199 4.199 14 C -0.204 4.204 15 C -0.551 4.551 16 H 0.096 0.904 17 C -0.127 4.127 18 N -0.527 5.527 19 Si 0.718 3.282 20 H -0.214 1.214 21 H -0.234 1.234 22 H -0.176 1.176 23 O -0.098 6.098 24 H 0.119 0.881 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.231 0.769 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.226 9.701 -10.894 24.938 hybrid contribution -1.505 -0.805 1.593 2.335 sum -21.731 8.896 -9.301 25.257 Atomic orbital electron populations 1.20406 0.79943 1.05963 1.05452 1.28158 0.98007 0.79583 0.98526 1.74480 0.95957 1.25529 1.17812 1.74477 1.12294 1.09062 1.15173 1.27956 0.85243 0.91662 1.01504 1.19325 0.86079 0.97746 0.85189 1.44989 1.30187 1.59049 1.07004 1.15842 0.80218 0.79021 0.84364 1.90937 1.55381 1.56896 1.43481 1.45497 1.31251 1.57188 1.04825 1.21443 0.83961 0.93633 0.97275 1.18734 0.94992 0.93649 0.89895 1.22296 0.98395 0.97580 1.01663 1.22357 0.97409 1.00579 1.00060 1.20707 1.07515 1.33102 0.93767 0.90439 1.24970 0.94648 0.94529 0.98563 1.69949 1.17791 1.44594 1.20383 0.87293 0.80823 0.79189 0.80877 1.21382 1.23400 1.17560 1.84824 1.17473 1.38288 1.69196 0.88081 0.88651 0.87336 0.88117 0.86579 0.76879 0.77237 0.91967 0.91810 0.96038 0.92541 0.93300 0.92744 0.94058 0.95293 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.00 0.38 0.18 16 2 C 0.17 1.45 8.48 -12.94 -0.11 1.34 16 3 N -0.29 -3.39 12.22 32.55 0.40 -2.99 16 4 N -0.26 -3.30 12.22 32.55 0.40 -2.90 16 5 C 0.15 1.56 7.85 -12.94 -0.10 1.46 16 6 C 0.24 2.48 6.30 -5.20 -0.03 2.45 16 7 N -0.75 -8.76 5.55 -66.42 -0.37 -9.13 16 8 C 0.71 11.12 8.57 -86.92 -0.74 10.38 16 9 O -0.59 -11.48 16.34 5.29 0.09 -11.40 16 10 N -0.73 -11.64 5.01 -65.23 -0.33 -11.97 16 11 C 0.16 3.12 4.49 -4.04 -0.02 3.11 16 12 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 13 C -0.14 -2.85 7.53 37.15 0.28 -2.57 16 14 C -0.15 -2.92 7.52 37.15 0.28 -2.64 16 15 C -0.51 -13.60 8.62 -34.44 -0.30 -13.90 16 16 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 17 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 18 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 19 Si 0.89 20.89 22.79 -169.99 -3.87 17.01 16 20 H -0.29 -6.72 7.10 56.52 0.40 -6.32 16 21 H -0.31 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.25 -5.34 4.65 56.52 0.26 -5.08 16 23 O -0.22 -2.13 10.87 5.37 0.06 -2.07 16 24 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.40 3.89 8.48 -40.82 -0.35 3.54 16 30 H 0.39 5.40 6.27 -40.82 -0.26 5.14 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.35 7.13 -51.93 -0.37 -0.02 16 34 H 0.06 1.21 4.30 -51.93 -0.22 0.99 16 35 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 38 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -33.60 318.36 -3.76 -37.36 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.17 Total: 4.64 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -0.54 Total: 2.33 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.87 Total: -52.68 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.14 Total: -13.47 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.87 Total: 17.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.60 -3.76 -37.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477425850.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.167 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds