Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.36005 * 116.99661 * 179.97438 * 3 2 1 5 5 C 1.39687 * 125.66767 * 179.97438 * 4 3 2 6 6 C 1.37984 * 107.63620 * 179.97438 * 5 4 3 7 7 C 1.47171 * 126.43563 * 179.97438 * 6 5 4 8 8 O 1.21634 * 120.00137 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00461 * 180.02562 * 7 6 5 10 10 C 1.46488 * 120.00513 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.47053 * 324.99515 * 10 9 7 12 12 C 1.52997 * 109.47583 * 84.99699 * 10 9 7 13 13 C 1.53006 * 109.47397 * 204.99990 * 10 9 7 14 14 N 1.46503 * 109.46652 * 54.99818 * 13 10 9 15 15 C 1.36939 * 119.99389 * 180.02562 * 14 13 10 16 16 H 1.07995 * 120.00231 * 0.02562 * 15 14 13 17 17 C 1.38820 * 119.99661 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47231 * 89.99881 * 19 17 15 21 21 H 1.48505 * 109.46891 * 209.99783 * 19 17 15 22 22 H 1.48500 * 109.47287 * 330.00050 * 19 17 15 23 23 N 1.36665 * 107.12829 * 0.02562 * 6 5 4 24 24 H 0.96998 * 126.09690 * 180.02562 * 23 6 5 25 25 N 1.31220 * 125.67034 * 359.69525 * 4 3 2 26 26 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 28 28 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 29 29 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 31 31 H 1.08001 * 126.18115 * 359.97438 * 5 4 3 32 32 H 0.97008 * 119.99329 * 0.02562 * 9 7 6 33 33 H 1.09005 * 109.46749 * 60.00504 * 12 10 9 34 34 H 1.09001 * 109.47389 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47115 * 300.00059 * 12 10 9 36 36 H 1.08999 * 109.47633 * 174.99496 * 13 10 9 37 37 H 1.08992 * 109.46966 * 294.99966 * 13 10 9 38 38 H 0.97001 * 120.00462 * 0.02562 * 14 13 10 39 39 H 0.97000 * 120.00640 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.0135 2.7572 0.0001 6 6 5.3702 2.5056 0.0015 7 6 6.4455 3.5104 0.0011 8 8 6.1707 4.6953 -0.0001 9 7 7.7348 3.1178 0.0021 10 6 8.8051 4.1179 0.0023 11 1 8.4962 4.9808 -0.5879 12 6 9.0910 4.5588 1.4392 13 6 10.0708 3.5107 -0.6063 14 7 9.7665 2.9808 -1.9378 15 6 10.7519 2.3851 -2.6791 16 1 11.7530 2.3055 -2.2820 17 6 10.4635 1.8825 -3.9406 18 7 9.2431 1.9781 -4.4239 19 14 11.8074 1.0693 -4.9515 20 1 11.8407 -0.3848 -4.6522 21 1 11.5304 1.2709 -6.3965 22 1 13.1193 1.6751 -4.6096 23 7 5.5278 1.1481 0.0022 24 1 6.3722 0.6708 0.0035 25 7 4.2528 0.5688 0.0067 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5455 3.7305 -0.0011 32 1 7.9539 2.1728 0.0027 33 1 9.4000 3.6960 2.0293 34 1 9.8878 5.3027 1.4393 35 1 8.1894 4.9915 1.8727 36 1 10.8395 4.2791 -0.6880 37 1 10.4300 2.7039 0.0325 38 1 8.8672 3.0519 -2.2943 39 1 9.0416 1.6273 -5.3055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498058418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = 9.463410 kcal Electronic energy + Delta-G solvation = -21744.777398 eV Core-core repulsion = 18303.980209 eV Total energy + Delta-G solvation = -3440.797189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40940 -39.47160 -38.25801 -36.30018 -33.80177 -32.35907 -31.63703 -30.50477 -30.10255 -29.67119 -25.80161 -24.43751 -23.28543 -22.54543 -21.37622 -20.58083 -20.18441 -18.88790 -17.19225 -17.07217 -16.45628 -16.07353 -15.66455 -15.17000 -14.79634 -14.43266 -14.12916 -13.84373 -13.70803 -13.50393 -13.34350 -12.83094 -12.75148 -12.47847 -12.31024 -12.21979 -11.87852 -11.72740 -11.04257 -10.98435 -10.92927 -10.87797 -10.56453 -10.13563 -9.99656 -9.82586 -9.20849 -9.00937 -8.91252 -8.69446 -7.05512 -5.85491 -3.16405 1.10071 2.36066 2.53090 2.88844 3.30928 3.37040 3.39157 3.43271 3.45179 4.50108 4.59761 4.70791 4.77333 4.84947 5.11794 5.14185 5.31165 5.33257 5.41710 5.46395 5.54867 5.59129 5.67854 5.78327 5.89163 5.98644 6.06312 6.08189 6.28438 6.32204 6.56304 6.72409 6.87429 7.21391 7.43211 7.59997 7.61124 8.18181 8.31725 9.43721 9.98097 10.33151 11.36441 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.003977 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.169622 B = 7039.026904 C = 8440.943031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.289 6.289 4 C 0.259 3.741 5 C -0.198 4.198 6 C 0.070 3.930 7 C 0.585 3.415 8 O -0.520 6.520 9 N -0.703 5.703 10 C 0.133 3.867 11 H 0.092 0.908 12 C -0.159 4.159 13 C 0.143 3.857 14 N -0.733 5.733 15 C -0.246 4.246 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 N -0.442 5.442 24 H 0.447 0.553 25 N -0.318 5.318 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.166 0.834 32 H 0.401 0.599 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.386 0.614 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 -2.172 12.644 17.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.194 6.194 4 C 0.056 3.944 5 C -0.229 4.229 6 C -0.061 4.061 7 C 0.369 3.631 8 O -0.394 6.394 9 N -0.353 5.353 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.217 4.217 13 C 0.015 3.985 14 N -0.378 5.378 15 C -0.377 4.377 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 N -0.160 5.160 24 H 0.294 0.706 25 N -0.161 5.161 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.183 0.817 32 H 0.235 0.765 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.043 0.957 38 H 0.220 0.780 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.454 -2.358 12.580 17.176 hybrid contribution 0.926 -0.655 -0.877 1.434 sum -10.529 -3.013 11.703 16.028 Atomic orbital electron populations 1.21793 0.92727 1.02881 1.03492 1.22722 0.95391 0.81286 1.02323 1.86305 1.13855 1.29617 1.89589 1.20197 0.84335 0.91990 0.97913 1.21017 0.89712 0.98156 1.14054 1.21330 0.95409 0.84456 1.04944 1.17001 0.81714 0.87132 0.77288 1.90838 1.82906 1.16032 1.49630 1.45900 1.04961 1.10965 1.73511 1.21366 0.87125 0.91822 0.96757 0.88954 1.22115 1.02073 1.01541 0.96013 1.21011 0.92995 0.96348 0.88140 1.42372 1.11321 1.70322 1.13790 1.19201 0.91194 1.30193 0.97148 0.91066 1.24770 0.96608 1.01668 0.97662 1.69659 1.18362 1.51231 1.18492 0.86182 0.81016 0.79204 0.79692 1.21698 1.21720 1.20716 1.46100 1.06948 1.03568 1.59353 0.70611 1.77298 0.88186 1.20285 1.30288 0.90298 0.91549 0.91446 0.91645 0.91802 0.81672 0.76485 0.92470 0.91285 0.92201 0.94499 0.95669 0.78039 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.59 6.33 37.16 0.24 0.83 16 3 O -0.29 -3.82 10.22 -19.76 -0.20 -4.02 16 4 C 0.26 3.79 7.85 -17.27 -0.14 3.66 16 5 C -0.20 -2.95 10.63 -39.13 -0.42 -3.36 16 6 C 0.07 1.04 7.12 -82.18 -0.59 0.46 16 7 C 0.59 9.43 7.77 -12.64 -0.10 9.33 16 8 O -0.52 -9.74 16.56 5.25 0.09 -9.66 16 9 N -0.70 -10.48 4.51 -54.96 -0.25 -10.73 16 10 C 0.13 2.08 2.73 -67.94 -0.19 1.89 16 11 H 0.09 1.63 7.58 -51.92 -0.39 1.24 16 12 C -0.16 -1.98 9.48 37.16 0.35 -1.63 16 13 C 0.14 2.60 5.82 -4.04 -0.02 2.58 16 14 N -0.73 -17.37 5.43 -59.91 -0.33 -17.70 16 15 C -0.25 -6.58 9.99 -15.06 -0.15 -6.73 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 18 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 23 N -0.44 -5.98 7.33 33.41 0.24 -5.73 16 24 H 0.45 4.98 8.23 -182.65 -1.50 3.48 16 25 N -0.32 -4.65 12.05 30.46 0.37 -4.28 16 26 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 32 H 0.40 5.45 7.78 -40.82 -0.32 5.13 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.39 9.82 7.33 -40.82 -0.30 9.52 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -32.28 340.08 -6.68 -38.96 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.71 Total: 12.04 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.72 Total: 5.89 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: 0.76 Total: -65.17 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.28 -6.68 -38.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498058418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.427 kcal (2) G-P(sol) polarization free energy of solvation -32.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds