Wall clock time and date at job start Tue Mar 31 2020 06:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.36005 * 116.99661 * 179.97438 * 3 2 1 5 5 C 1.39687 * 125.66767 * 179.97438 * 4 3 2 6 6 C 1.37984 * 107.63620 * 179.97438 * 5 4 3 7 7 C 1.47171 * 126.43563 * 179.97438 * 6 5 4 8 8 O 1.21634 * 120.00137 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00461 * 180.02562 * 7 6 5 10 10 C 1.46488 * 120.00513 * 180.02562 * 9 7 6 11 11 H 1.09009 * 109.47053 * 324.99515 * 10 9 7 12 12 C 1.52997 * 109.47583 * 84.99699 * 10 9 7 13 13 C 1.53006 * 109.47397 * 204.99990 * 10 9 7 14 14 N 1.46503 * 109.46652 * 54.99818 * 13 10 9 15 15 C 1.36939 * 119.99389 * 180.02562 * 14 13 10 16 16 H 1.07995 * 120.00231 * 0.02562 * 15 14 13 17 17 C 1.38820 * 119.99661 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00186 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99829 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47231 * 89.99881 * 19 17 15 21 21 H 1.48505 * 109.46891 * 209.99783 * 19 17 15 22 22 H 1.48500 * 109.47287 * 330.00050 * 19 17 15 23 23 N 1.36665 * 107.12829 * 0.02562 * 6 5 4 24 24 H 0.96998 * 126.09690 * 180.02562 * 23 6 5 25 25 N 1.31220 * 125.67034 * 359.69525 * 4 3 2 26 26 H 1.09008 * 109.47419 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47592 * 300.00144 * 1 2 3 28 28 H 1.09007 * 109.46935 * 60.00317 * 1 2 3 29 29 H 1.08996 * 109.47090 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.47084 * 119.99957 * 2 1 3 31 31 H 1.08001 * 126.18115 * 359.97438 * 5 4 3 32 32 H 0.97008 * 119.99329 * 0.02562 * 9 7 6 33 33 H 1.09005 * 109.46749 * 60.00504 * 12 10 9 34 34 H 1.09001 * 109.47389 * 179.97438 * 12 10 9 35 35 H 1.08999 * 109.47115 * 300.00059 * 12 10 9 36 36 H 1.08999 * 109.47633 * 174.99496 * 13 10 9 37 37 H 1.08992 * 109.46966 * 294.99966 * 13 10 9 38 38 H 0.97001 * 120.00462 * 0.02562 * 14 13 10 39 39 H 0.97000 * 120.00640 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5254 0.0005 5 6 4.0135 2.7572 0.0001 6 6 5.3702 2.5056 0.0015 7 6 6.4455 3.5104 0.0011 8 8 6.1707 4.6953 -0.0001 9 7 7.7348 3.1178 0.0021 10 6 8.8051 4.1179 0.0023 11 1 8.4962 4.9808 -0.5879 12 6 9.0910 4.5588 1.4392 13 6 10.0708 3.5107 -0.6063 14 7 9.7665 2.9808 -1.9378 15 6 10.7519 2.3851 -2.6791 16 1 11.7530 2.3055 -2.2820 17 6 10.4635 1.8825 -3.9406 18 7 9.2431 1.9781 -4.4239 19 14 11.8074 1.0693 -4.9515 20 1 11.8407 -0.3848 -4.6522 21 1 11.5304 1.2709 -6.3965 22 1 13.1193 1.6751 -4.6096 23 7 5.5278 1.1481 0.0022 24 1 6.3722 0.6708 0.0035 25 7 4.2528 0.5688 0.0067 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5455 3.7305 -0.0011 32 1 7.9539 2.1728 0.0027 33 1 9.4000 3.6960 2.0293 34 1 9.8878 5.3027 1.4393 35 1 8.1894 4.9915 1.8727 36 1 10.8395 4.2791 -0.6880 37 1 10.4300 2.7039 0.0325 38 1 8.8672 3.0519 -2.2943 39 1 9.0416 1.6273 -5.3055 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498058418.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:16 Heat of formation + Delta-G solvation = -16.263759 kcal Electronic energy + Delta-G solvation = -21745.893012 eV Core-core repulsion = 18303.980209 eV Total energy + Delta-G solvation = -3441.912803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.55747 -40.73055 -39.28529 -37.76194 -35.54811 -33.52964 -32.85265 -32.02282 -31.16812 -30.91365 -27.43031 -25.59343 -24.56004 -23.98282 -22.44086 -21.85280 -21.40136 -20.13939 -19.12253 -18.10280 -17.45644 -17.38174 -16.97012 -16.58355 -16.30807 -15.59297 -15.42002 -15.27740 -15.05999 -14.91811 -14.66004 -13.99541 -13.67312 -13.63350 -13.47547 -13.42443 -13.09483 -12.78753 -12.69922 -12.63432 -12.15981 -12.01715 -11.90701 -11.84753 -11.71703 -11.32479 -10.96655 -10.41990 -10.14079 -9.80596 -9.02159 -7.95287 -5.24788 -0.09955 1.30150 1.37330 1.48417 1.49407 1.57765 1.71227 2.07372 2.31247 2.55652 3.39515 3.48724 3.54607 3.80562 4.01651 4.05234 4.12144 4.22958 4.29604 4.39890 4.41145 4.50186 4.77080 4.79344 4.86616 4.94711 4.95256 5.01069 5.09476 5.23088 5.31848 5.42224 5.51837 5.76816 6.17546 6.25105 6.29400 6.42526 6.92259 7.33100 8.06541 8.29192 9.27338 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.003977 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.169622 B = 7039.026904 C = 8440.943031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.297 6.297 4 C 0.254 3.746 5 C -0.208 4.208 6 C 0.065 3.935 7 C 0.588 3.412 8 O -0.550 6.550 9 N -0.695 5.695 10 C 0.140 3.860 11 H 0.069 0.931 12 C -0.148 4.148 13 C 0.143 3.857 14 N -0.745 5.745 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.073 4.073 18 N -0.968 5.968 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.269 1.269 23 N -0.432 5.432 24 H 0.456 0.544 25 N -0.323 5.323 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.171 0.829 32 H 0.408 0.592 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.045 0.955 38 H 0.374 0.626 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.694 -2.880 13.827 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 O -0.202 6.202 4 C 0.051 3.949 5 C -0.239 4.239 6 C -0.067 4.067 7 C 0.372 3.628 8 O -0.426 6.426 9 N -0.346 5.346 10 C 0.035 3.965 11 H 0.087 0.913 12 C -0.207 4.207 13 C 0.017 3.983 14 N -0.388 5.388 15 C -0.373 4.373 16 H 0.099 0.901 17 C -0.266 4.266 18 N -0.618 5.618 19 Si 0.801 3.199 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.194 1.194 23 N -0.151 5.151 24 H 0.305 0.695 25 N -0.167 5.167 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.188 0.812 32 H 0.244 0.756 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.206 0.794 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.799 -3.083 13.815 17.804 hybrid contribution 0.734 -0.428 -1.177 1.452 sum -10.065 -3.512 12.638 16.533 Atomic orbital electron populations 1.21819 0.90448 1.04434 1.03588 1.23002 0.97176 0.79931 1.02320 1.86315 1.12979 1.31532 1.89374 1.20307 0.85028 0.91810 0.97749 1.21207 0.89940 0.98728 1.14068 1.21146 0.95130 0.84761 1.05645 1.17080 0.82080 0.86877 0.76716 1.90819 1.83349 1.17268 1.51213 1.45839 1.04593 1.11333 1.72812 1.21263 0.86001 0.90823 0.98368 0.91303 1.22033 1.02480 1.02622 0.93542 1.21187 0.94356 0.96856 0.85932 1.42560 1.10273 1.70379 1.15623 1.19623 0.92024 1.28513 0.97170 0.90125 1.25532 0.98509 1.03381 0.99174 1.69818 1.20319 1.53197 1.18515 0.85177 0.79034 0.78312 0.77424 1.21340 1.22851 1.19409 1.46106 1.07213 1.03100 1.58722 0.69491 1.77272 0.88472 1.20453 1.30471 0.87981 0.91177 0.91603 0.92056 0.91377 0.81171 0.75619 0.90679 0.89720 0.92589 0.93901 0.93708 0.79431 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.05 0.98 6.33 71.98 0.46 1.44 16 3 O -0.30 -7.72 10.22 -93.60 -0.96 -8.67 16 4 C 0.25 7.36 7.85 85.13 0.67 8.03 16 5 C -0.21 -6.19 10.63 22.56 0.24 -5.95 16 6 C 0.06 1.92 7.12 40.68 0.29 2.21 16 7 C 0.59 18.86 7.77 86.59 0.67 19.54 16 8 O -0.55 -20.77 16.56 -4.14 -0.07 -20.84 16 9 N -0.70 -20.19 4.51 -446.05 -2.01 -22.20 16 10 C 0.14 4.18 2.73 44.99 0.12 4.30 16 11 H 0.07 2.42 7.58 -2.38 -0.02 2.40 16 12 C -0.15 -3.35 9.48 71.98 0.68 -2.67 16 13 C 0.14 4.94 5.82 86.38 0.50 5.45 16 14 N -0.75 -34.76 5.43 -343.44 -1.87 -36.63 16 15 C -0.24 -12.63 9.99 84.04 0.84 -11.79 16 16 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 18 N -0.97 -57.81 13.06 21.65 0.28 -57.53 16 19 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 N -0.43 -11.44 7.33 -48.20 -0.35 -11.80 16 24 H 0.46 9.80 8.23 -213.36 -1.76 8.04 16 25 N -0.32 -9.27 12.05 -170.76 -2.06 -11.32 16 26 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.17 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.41 10.64 7.78 -92.70 -0.72 9.92 16 33 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.37 19.11 7.33 -92.71 -0.68 18.43 16 39 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -68.22 340.08 -1.39 -69.61 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -2.07 Total: 36.86 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 5.68 Total: 15.79 kcal Atomic # 7 Polarization: -133.46 SS G_CDS: -6.01 Total: -139.47 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.03 Total: -29.51 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.22 -1.39 -69.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498058418.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.343 kcal (2) G-P(sol) polarization free energy of solvation -68.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds