Wall clock time and date at job start Tue Mar 31 2020 07:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46677 * 2 1 4 4 C 1.52991 * 109.47055 * 240.00407 * 2 1 3 5 5 O 1.42896 * 109.46841 * 120.00184 * 2 1 3 6 6 C 1.42896 * 114.00460 * 60.00176 * 5 2 1 7 7 H 1.09001 * 115.54610 * 4.33166 * 6 5 2 8 8 C 1.53000 * 117.52173 * 218.62853 * 6 5 2 9 9 C 1.52993 * 117.50075 * 149.99433 * 6 5 2 10 10 H 1.09004 * 117.49984 * 0.03068 * 9 6 5 11 11 C 1.50705 * 117.50271 * 215.02658 * 9 6 5 12 12 O 1.20825 * 119.99741 * 0.09056 * 11 9 6 13 13 O 1.34225 * 120.00094 * 180.08764 * 11 9 6 14 14 C 1.45208 * 116.99792 * 175.18923 * 13 11 9 15 15 C 1.50696 * 112.84798 * 54.50971 * 14 13 11 16 16 H 1.08005 * 119.99695 * 244.95545 * 15 14 13 17 17 C 1.37876 * 120.00434 * 64.94973 * 15 14 13 18 18 N 1.31513 * 119.99525 * 354.95969 * 17 15 14 19 19 Si 1.86792 * 120.00192 * 174.95881 * 17 15 14 20 20 H 1.48499 * 109.47502 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47515 * 120.00401 * 19 17 15 22 22 H 1.48497 * 109.47250 * 240.00349 * 19 17 15 23 23 C 1.53780 * 113.61202 * 283.19929 * 14 13 11 24 24 C 1.53783 * 87.08117 * 220.01671 * 23 14 13 25 25 C 1.53778 * 113.61170 * 185.70448 * 14 13 11 26 26 H 1.09001 * 109.47329 * 299.99982 * 1 2 3 27 27 H 1.09007 * 109.47369 * 59.99890 * 1 2 3 28 28 H 1.09001 * 109.47200 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46827 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47439 * 299.99764 * 3 2 1 31 31 H 1.08998 * 109.46831 * 60.00298 * 3 2 1 32 32 H 1.09009 * 109.47108 * 299.99712 * 4 2 1 33 33 H 1.08999 * 109.47968 * 60.00107 * 4 2 1 34 34 H 1.09006 * 109.47251 * 179.97438 * 4 2 1 35 35 H 1.08997 * 117.50053 * 145.02738 * 8 6 5 36 36 H 1.08997 * 117.49448 * 0.02562 * 8 6 5 37 37 H 0.97007 * 119.99853 * 184.99054 * 18 17 15 38 38 H 1.08996 * 113.62125 * 334.56990 * 23 14 13 39 39 H 1.09003 * 113.60985 * 105.47560 * 23 14 13 40 40 H 1.08996 * 113.61545 * 270.89033 * 24 23 14 41 41 H 1.09003 * 113.61200 * 139.98257 * 24 23 14 42 42 H 1.09003 * 113.61302 * 254.52690 * 25 14 13 43 43 H 1.08998 * 113.61531 * 25.34942 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0355 1.2645 7 1 1.0200 -2.4150 0.4129 8 6 1.2105 -2.5620 2.6514 9 6 2.5135 -3.0124 1.9881 10 1 3.4461 -2.6162 2.3901 11 6 2.5781 -4.4257 1.4687 12 8 1.9123 -4.7493 0.5138 13 8 3.3752 -5.3248 2.0669 14 6 3.3071 -6.6918 1.5820 15 6 3.5393 -6.7981 0.0968 16 1 2.7451 -7.1392 -0.5508 17 6 4.7655 -6.4600 -0.4353 18 7 5.6999 -5.9512 0.3377 19 14 5.0994 -6.7245 -2.2540 20 1 3.8945 -7.3050 -2.8993 21 1 5.4238 -5.4235 -2.8922 22 1 6.2453 -7.6549 -2.4167 23 6 2.0658 -7.4573 2.0698 24 6 2.9849 -8.6774 2.2471 25 6 4.1451 -7.6811 2.4089 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 -1.7489 -1.2493 33 1 1.6767 -0.2073 -2.1392 34 1 3.1300 -0.7207 -1.2495 35 1 0.3996 -3.2878 2.7124 36 1 1.2854 -1.8693 3.4897 37 1 6.5359 -5.6462 -0.0485 38 1 1.6587 -7.0773 3.0068 39 1 1.3054 -7.5916 1.3004 40 1 3.0636 -9.2981 1.3546 41 1 2.7758 -9.2542 3.1481 42 1 5.0634 -7.9962 1.9133 43 1 4.3078 -7.3616 3.4383 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514870300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:18 Heat of formation + Delta-G solvation = -86.775679 kcal Electronic energy + Delta-G solvation = -23408.830314 eV Core-core repulsion = 20035.107478 eV Total energy + Delta-G solvation = -3373.722837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.65571 -38.84084 -37.27532 -35.39979 -34.04127 -32.42593 -32.23630 -27.53884 -27.32801 -26.28732 -24.62534 -24.46138 -22.47946 -22.14150 -19.88124 -19.30400 -18.54352 -17.27339 -16.50784 -15.59271 -15.28296 -15.05655 -14.83535 -14.75450 -14.22548 -13.84462 -13.56533 -13.30896 -13.04210 -12.54411 -12.41918 -12.16542 -11.93535 -11.88270 -11.74782 -11.69399 -11.52905 -11.18053 -11.00079 -10.86539 -10.79977 -10.55816 -10.40968 -10.23686 -10.13568 -9.87501 -9.77577 -9.26095 -9.00975 -8.77580 -8.49897 -8.46110 -6.07528 -4.16274 3.21823 3.27616 3.34969 3.40552 3.43993 4.12867 4.34705 4.38982 4.79412 4.84052 4.99786 5.08115 5.19249 5.24649 5.42583 5.47405 5.54008 5.56871 5.68144 5.72918 5.79828 5.81074 5.83472 5.85654 5.94121 5.98599 6.07462 6.17870 6.24764 6.32703 6.35991 6.47256 6.54252 6.65230 6.88286 7.11691 7.34334 7.40297 7.57625 7.82311 7.96177 8.43100 8.85280 9.30145 9.51413 10.97413 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017806 B = 0.005470 C = 0.004597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.116536 B = 5117.898106 C = 6089.827729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.344 6.344 6 C 0.049 3.951 7 H 0.125 0.875 8 C -0.160 4.160 9 C -0.162 4.162 10 H 0.129 0.871 11 C 0.494 3.506 12 O -0.505 6.505 13 O -0.344 6.344 14 C 0.237 3.763 15 C -0.502 4.502 16 H 0.068 0.932 17 C 0.073 3.927 18 N -0.866 5.866 19 Si 0.892 3.108 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.282 1.282 23 C -0.161 4.161 24 C -0.130 4.130 25 C -0.107 4.107 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.262 0.738 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 9.668 2.179 12.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.069 3.931 3 C -0.194 4.194 4 C -0.239 4.239 5 O -0.263 6.263 6 C -0.009 4.009 7 H 0.143 0.857 8 C -0.198 4.198 9 C -0.182 4.182 10 H 0.147 0.853 11 C 0.336 3.664 12 O -0.394 6.394 13 O -0.260 6.260 14 C 0.204 3.796 15 C -0.540 4.540 16 H 0.086 0.914 17 C -0.132 4.132 18 N -0.503 5.503 19 Si 0.720 3.280 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.208 1.208 23 C -0.199 4.199 24 C -0.168 4.168 25 C -0.145 4.145 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.094 0.906 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.535 9.615 2.040 12.385 hybrid contribution 0.266 -0.160 -1.198 1.238 sum -7.269 9.455 0.842 11.956 Atomic orbital electron populations 1.22463 0.95542 1.02898 1.02451 1.21540 0.93210 0.92873 0.85512 1.21755 1.02111 0.93268 1.02241 1.22493 1.02617 1.01540 0.97204 1.87872 1.73619 1.21939 1.42851 1.22569 0.99780 0.82113 0.96454 0.85714 1.23430 0.96823 1.02544 0.96988 1.22316 0.97716 0.92415 1.05761 0.85349 1.21661 0.77412 0.86098 0.81239 1.90547 1.42626 1.80437 1.25806 1.86426 1.58180 1.22161 1.59201 1.21238 0.90719 0.73856 0.93827 1.20939 0.97144 1.45636 0.90235 0.91428 1.25043 0.95742 0.94405 0.98027 1.70036 1.06512 1.39051 1.34706 0.86519 0.78292 0.77986 0.85226 1.19496 1.20960 1.20802 1.23560 0.98593 0.98013 0.99762 1.22509 0.98165 0.95767 1.00325 1.22889 0.98167 0.94971 0.98471 0.91815 0.91684 0.91854 0.91722 0.91155 0.91919 0.91377 0.91741 0.91546 0.87845 0.87504 0.92844 0.92088 0.92088 0.90229 0.92978 0.90559 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.38 37.16 0.31 -1.59 16 2 C 0.11 1.36 1.11 -90.62 -0.10 1.26 16 3 C -0.14 -1.41 8.84 37.16 0.33 -1.08 16 4 C -0.18 -2.44 8.38 37.15 0.31 -2.13 16 5 O -0.34 -5.35 10.24 -35.23 -0.36 -5.71 16 6 C 0.05 0.81 4.47 -26.73 -0.12 0.69 16 7 H 0.13 2.13 5.16 -51.93 -0.27 1.86 16 8 C -0.16 -2.42 10.18 -26.73 -0.27 -2.69 16 9 C -0.16 -3.10 6.25 -91.77 -0.57 -3.67 16 10 H 0.13 2.42 8.14 -51.93 -0.42 2.00 16 11 C 0.49 11.81 7.39 36.01 0.27 12.07 16 12 O -0.51 -13.08 14.58 -18.75 -0.27 -13.35 16 13 O -0.34 -8.90 9.93 -39.24 -0.39 -9.29 16 14 C 0.24 6.06 0.50 -90.96 -0.05 6.02 16 15 C -0.50 -14.02 6.29 -34.44 -0.22 -14.23 16 16 H 0.07 1.95 7.82 -52.48 -0.41 1.54 16 17 C 0.07 2.04 5.24 -17.82 -0.09 1.94 16 18 N -0.87 -24.85 12.54 55.43 0.69 -24.15 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 C -0.16 -3.56 7.28 -25.92 -0.19 -3.75 16 24 C -0.13 -2.63 7.81 -25.91 -0.20 -2.83 16 25 C -0.11 -2.49 7.19 -25.92 -0.19 -2.68 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.73 6.71 -51.93 -0.35 0.38 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 1.04 6.53 -51.92 -0.34 0.70 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 37 H 0.26 7.16 8.32 -40.82 -0.34 6.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.37 8.09 -51.93 -0.42 0.94 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.91 7.63 -51.93 -0.40 1.51 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -31.09 351.69 -8.07 -39.16 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.24 Total: 3.95 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -0.78 Total: -12.66 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.69 Total: -24.15 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -1.02 Total: -28.35 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.09 -8.07 -39.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514870300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.614 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds