Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00147 * 2 1 4 4 C 1.52998 * 109.47391 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47253 * 180.02562 * 4 3 2 6 6 C 1.34819 * 126.59059 * 125.02100 * 5 4 3 7 7 C 1.36594 * 106.83423 * 179.97438 * 6 5 4 8 8 C 1.47526 * 125.76963 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99701 * 353.47815 * 8 7 6 10 10 N 1.34774 * 120.00327 * 173.47575 * 8 7 6 11 11 C 1.46496 * 119.99835 * 3.32414 * 10 8 7 12 12 C 1.46500 * 120.00142 * 183.33172 * 10 8 7 13 13 H 1.09004 * 109.47143 * 359.97438 * 12 10 8 14 14 C 1.53008 * 109.46780 * 239.99820 * 12 10 8 15 15 C 1.50700 * 109.47644 * 119.99723 * 12 10 8 16 16 H 1.08001 * 119.99337 * 359.97438 * 15 12 10 17 17 C 1.37874 * 120.00049 * 179.97438 * 15 12 10 18 18 N 1.31510 * 120.00142 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 119.99781 * 179.97438 * 17 15 12 20 20 H 1.48507 * 109.47286 * 59.99924 * 19 17 15 21 21 H 1.48500 * 109.47089 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47314 * 300.00016 * 19 17 15 23 23 N 1.34398 * 108.46269 * 359.97438 * 7 6 5 24 24 N 1.28755 * 109.52220 * 0.02562 * 23 7 6 25 25 H 1.08997 * 109.46995 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47045 * 299.99761 * 1 2 3 27 27 H 1.09001 * 109.47249 * 59.99151 * 1 2 3 28 28 H 1.09003 * 109.47241 * 60.00343 * 3 2 1 29 29 H 1.09005 * 109.47498 * 300.00373 * 3 2 1 30 30 H 1.08996 * 109.47203 * 60.00022 * 4 3 2 31 31 H 1.08995 * 109.46934 * 300.00318 * 4 3 2 32 32 H 1.08001 * 126.58039 * 359.97438 * 6 5 4 33 33 H 1.08999 * 109.46885 * 84.10936 * 11 10 8 34 34 H 1.09004 * 109.47047 * 204.11156 * 11 10 8 35 35 H 1.09003 * 109.47289 * 324.10993 * 11 10 8 36 36 H 1.08999 * 109.47026 * 59.99978 * 14 12 10 37 37 H 1.09001 * 109.47003 * 179.97438 * 14 12 10 38 38 H 1.08995 * 109.46607 * 299.99732 * 14 12 10 39 39 H 0.97001 * 119.99889 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0260 3.0040 0.8864 7 6 5.3072 4.2862 0.5087 8 6 6.2396 5.2020 1.1929 9 8 6.7454 4.8766 2.2498 10 7 6.5309 6.3991 0.6467 11 6 5.8665 6.8218 -0.5886 12 6 7.5121 7.2778 1.2882 13 1 7.8961 6.7976 2.1884 14 6 6.8430 8.6018 1.6628 15 6 8.6492 7.5416 0.3351 16 1 8.6419 7.0986 -0.6498 17 6 9.6988 8.3483 0.7206 18 7 9.7073 8.8880 1.9198 19 14 11.1086 8.6747 -0.4606 20 1 10.5855 9.3282 -1.6873 21 1 12.1025 9.5664 0.1893 22 1 11.7583 7.3896 -0.8231 23 7 4.5907 4.5725 -0.5918 24 7 3.8816 3.5497 -0.9217 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8465 -0.8900 30 1 3.8567 0.6439 -0.8908 31 1 3.8574 0.6436 0.8891 32 1 5.4409 2.4766 1.7327 33 1 4.9017 7.2680 -0.3478 34 1 6.4879 7.5550 -1.1028 35 1 5.7156 5.9566 -1.2344 36 1 6.0206 8.4110 2.3522 37 1 7.5729 9.2554 2.1405 38 1 6.4588 9.0820 0.7629 39 1 10.4455 9.4559 2.1908 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518824110.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 32.782024 kcal Electronic energy + Delta-G solvation = -21948.806190 eV Core-core repulsion = 18509.020172 eV Total energy + Delta-G solvation = -3439.786018 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12343 -38.76683 -38.42664 -35.33138 -34.99970 -32.76263 -31.07868 -30.28625 -28.90718 -26.86264 -25.98315 -25.16864 -24.28558 -23.45490 -21.76591 -20.81572 -18.88905 -17.54110 -16.81363 -16.64130 -16.22165 -16.03906 -15.80441 -15.30062 -15.14569 -14.50854 -14.33510 -14.15352 -13.83234 -13.03501 -12.75219 -12.44128 -12.32621 -12.28381 -12.00266 -11.91031 -11.56217 -11.52360 -11.04053 -10.81274 -10.67547 -10.49808 -10.32592 -10.23609 -10.17318 -10.11639 -9.21255 -9.12203 -9.08178 -8.38481 -7.50986 -6.02906 -4.10529 1.18112 1.83844 2.03636 3.27768 3.32240 3.36559 3.38921 3.82763 3.95439 4.18755 4.35630 4.42183 4.45214 4.70176 4.83225 4.86088 4.93192 5.01992 5.14374 5.17682 5.20282 5.28182 5.43929 5.82045 6.25644 6.29909 6.36537 6.52648 6.72605 6.84404 6.93255 7.12845 7.48139 7.57380 7.76553 8.01353 8.10086 8.24016 8.57067 8.85252 9.05204 9.55451 11.02434 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040103 B = 0.003192 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.042915 B = 8770.536103 C = 8857.430611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.128 3.872 5 N -0.367 5.367 6 C 0.088 3.912 7 C -0.080 4.080 8 C 0.584 3.416 9 O -0.554 6.554 10 N -0.572 5.572 11 C 0.081 3.919 12 C 0.258 3.742 13 H 0.064 0.936 14 C -0.146 4.146 15 C -0.525 4.525 16 H 0.060 0.940 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.277 1.277 23 N -0.196 5.196 24 N -0.080 5.080 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.204 0.796 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.011 0.989 37 H 0.094 0.906 38 H 0.031 0.969 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 -15.095 -3.670 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.154 5.154 6 C -0.067 4.067 7 C -0.219 4.219 8 C 0.368 3.632 9 O -0.433 6.433 10 N -0.301 5.301 11 C -0.064 4.064 12 C 0.158 3.842 13 H 0.082 0.918 14 C -0.204 4.204 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 N -0.070 5.070 24 N -0.060 5.060 25 H 0.109 0.891 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.221 0.779 33 H 0.061 0.939 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.030 0.970 37 H 0.112 0.888 38 H 0.050 0.950 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.295 -14.903 -4.251 22.488 hybrid contribution 0.978 0.038 0.149 0.990 sum -15.317 -14.864 -4.102 21.734 Atomic orbital electron populations 1.22796 0.79785 1.03171 1.00517 1.87775 1.20698 1.26665 1.95633 1.22640 0.92111 0.85586 1.02420 1.21604 0.92960 0.78478 1.06361 1.50216 1.31013 1.13324 1.20845 1.23370 0.92394 0.95193 0.95785 1.21926 1.06203 0.95650 0.98151 1.16833 0.80483 0.81492 0.84356 1.90753 1.54337 1.75772 1.22407 1.48114 1.40659 1.16391 1.24933 1.21936 0.96150 1.01396 0.86876 1.19018 0.84554 0.86181 0.94475 0.91781 1.22081 0.99112 1.00424 0.98825 1.21294 1.04429 1.29997 1.00673 0.92170 1.24880 0.98033 0.95486 0.95342 1.69872 1.32035 1.32474 1.18254 0.86541 0.81727 0.78165 0.80865 1.20205 1.21204 1.20268 1.74844 1.03870 1.18075 1.10214 1.81944 1.20676 0.90917 1.12435 0.89104 0.93716 0.93586 0.92292 0.91256 0.87600 0.86916 0.77883 0.93925 0.90601 0.90231 0.96951 0.88772 0.95016 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.07 10.70 -35.23 -0.38 -3.45 16 3 C 0.05 0.38 6.14 37.16 0.23 0.61 16 4 C 0.13 0.96 6.91 -4.04 -0.03 0.93 16 5 N -0.37 -4.28 3.69 -61.06 -0.23 -4.50 16 6 C 0.09 1.17 11.28 -16.83 -0.19 0.98 16 7 C -0.08 -1.41 6.69 -83.55 -0.56 -1.97 16 8 C 0.58 12.82 7.67 -12.47 -0.10 12.72 16 9 O -0.55 -13.56 16.20 5.28 0.09 -13.48 16 10 N -0.57 -13.11 2.75 -176.49 -0.49 -13.60 16 11 C 0.08 1.58 8.52 59.84 0.51 2.09 16 12 C 0.26 6.77 2.63 -69.08 -0.18 6.58 16 13 H 0.06 1.91 6.90 -51.93 -0.36 1.55 16 14 C -0.15 -3.60 8.97 37.16 0.33 -3.27 16 15 C -0.53 -14.48 7.95 -34.44 -0.27 -14.76 16 16 H 0.06 1.64 7.43 -52.49 -0.39 1.25 16 17 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 18 N -0.89 -25.31 11.32 55.43 0.63 -24.68 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 N -0.20 -3.35 8.81 32.85 0.29 -3.06 16 24 N -0.08 -1.18 13.65 60.35 0.82 -0.36 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.11 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.52 7.12 -51.93 -0.37 1.16 16 35 H 0.08 1.48 5.31 -51.93 -0.28 1.20 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 38 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 39 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 331.14 15.07 4.99 4.99 Total: -1.00 -32.92 331.14 -4.00 -36.92 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.47 Total: -2.00 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 0.76 Total: 6.92 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 1.03 Total: -46.19 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.29 Total: -16.92 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.92 -4.00 -36.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824110.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.698 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds