Wall clock time and date at job start Tue Mar 31 2020 05:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00108 * 2 1 4 4 C 1.53005 * 109.47113 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46973 * 180.02562 * 4 3 2 6 6 C 1.34811 * 126.59626 * 124.71463 * 5 4 3 7 7 C 1.36598 * 106.83866 * 180.26288 * 6 5 4 8 8 C 1.47525 * 125.76619 * 180.02562 * 7 6 5 9 9 O 1.21595 * 120.00252 * 353.47818 * 8 7 6 10 10 N 1.34777 * 119.99809 * 173.48250 * 8 7 6 11 11 C 1.46507 * 119.99909 * 3.31215 * 10 8 7 12 12 C 1.46503 * 120.00133 * 183.30854 * 10 8 7 13 13 H 1.09002 * 109.46983 * 0.02562 * 12 10 8 14 14 C 1.53002 * 109.47020 * 120.00032 * 12 10 8 15 15 C 1.50694 * 109.47270 * 239.99938 * 12 10 8 16 16 H 1.08002 * 120.00039 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00070 * 180.02562 * 15 12 10 18 18 N 1.31511 * 119.99813 * 359.97438 * 17 15 12 19 19 Si 1.86797 * 120.00113 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47274 * 90.00055 * 19 17 15 21 21 H 1.48500 * 109.47398 * 210.00039 * 19 17 15 22 22 H 1.48504 * 109.47243 * 329.99621 * 19 17 15 23 23 N 1.34399 * 108.46010 * 359.97438 * 7 6 5 24 24 N 1.28760 * 109.52397 * 0.02562 * 23 7 6 25 25 H 1.08994 * 109.47707 * 300.00467 * 1 2 3 26 26 H 1.09001 * 109.46759 * 60.00182 * 1 2 3 27 27 H 1.09001 * 109.47626 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47316 * 60.00223 * 3 2 1 29 29 H 1.08998 * 109.47241 * 299.99798 * 3 2 1 30 30 H 1.08999 * 109.47489 * 59.99822 * 4 3 2 31 31 H 1.09001 * 109.47327 * 299.99655 * 4 3 2 32 32 H 1.08004 * 126.58004 * 0.25489 * 6 5 4 33 33 H 1.08998 * 109.47045 * 84.12081 * 11 10 8 34 34 H 1.09003 * 109.46317 * 204.12119 * 11 10 8 35 35 H 1.09000 * 109.46930 * 324.11296 * 11 10 8 36 36 H 1.09007 * 109.46640 * 300.00125 * 14 12 10 37 37 H 1.08996 * 109.46811 * 59.99624 * 14 12 10 38 38 H 1.09000 * 109.47050 * 180.02562 * 14 12 10 39 39 H 0.97007 * 120.00084 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5229 0.0013 6 6 5.0209 3.0062 0.8915 7 6 5.2992 4.2897 0.5158 8 6 6.2267 5.2076 1.2038 9 8 6.7303 4.8829 2.2619 10 7 6.5159 6.4063 0.6597 11 6 5.8539 6.8280 -0.5774 12 6 7.4920 7.2876 1.3053 13 1 7.8752 6.8075 2.2057 14 6 8.6487 7.5601 0.3416 15 6 6.8276 8.5891 1.6733 16 1 5.7827 8.7445 1.4483 17 6 7.5537 9.5819 2.2961 18 7 8.8261 9.3928 2.5695 19 14 6.7299 11.1950 2.7529 20 1 6.1656 11.0921 4.1227 21 1 7.7307 12.2913 2.7109 22 1 5.6385 11.4840 1.7883 23 7 4.5860 4.5744 -0.5872 24 7 3.8816 3.5494 -0.9207 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8575 0.6435 -0.8891 31 1 3.8567 0.6439 0.8909 32 1 5.4341 2.4797 1.7391 33 1 4.8870 7.2711 -0.3393 34 1 6.4747 7.5636 -1.0890 35 1 5.7079 5.9630 -1.2244 36 1 9.1293 6.6186 0.0754 37 1 8.2658 8.0399 -0.5591 38 1 9.3752 8.2154 0.8220 39 1 9.3372 10.0915 3.0074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518824111.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:18 Heat of formation + Delta-G solvation = 33.675988 kcal Electronic energy + Delta-G solvation = -21953.751965 eV Core-core repulsion = 18514.004713 eV Total energy + Delta-G solvation = -3439.747253 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.12789 -38.76825 -38.42360 -35.33840 -35.00301 -32.75869 -31.08096 -30.28499 -28.90805 -26.85802 -26.01360 -25.15930 -24.28543 -23.46142 -21.77032 -20.80644 -18.87575 -17.53676 -16.81763 -16.62208 -16.30160 -15.95710 -15.81354 -15.25683 -15.22675 -14.52980 -14.28511 -14.16330 -13.82769 -13.06035 -12.66818 -12.56700 -12.34067 -12.26568 -12.05390 -11.92439 -11.58725 -11.46166 -11.00729 -10.80280 -10.70412 -10.50479 -10.27959 -10.23069 -10.18073 -10.10153 -9.20876 -9.14674 -9.05751 -8.37994 -7.50739 -6.02145 -4.09297 1.17362 1.83767 2.03160 3.27884 3.31719 3.37782 3.40830 3.86458 3.90585 4.18826 4.35724 4.42129 4.46074 4.70292 4.83698 4.87042 4.93234 5.01953 5.14607 5.17321 5.21010 5.29142 5.43579 5.80606 6.18636 6.29480 6.43934 6.53116 6.66206 6.84250 6.91441 7.11004 7.49001 7.55663 7.77174 8.01674 8.09273 8.24509 8.57249 8.86741 9.05496 9.56718 11.03277 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032182 B = 0.003293 C = 0.003199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.836688 B = 8500.932153 C = 8750.812211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.128 3.872 5 N -0.367 5.367 6 C 0.088 3.912 7 C -0.080 4.080 8 C 0.584 3.416 9 O -0.553 6.553 10 N -0.573 5.573 11 C 0.084 3.916 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.522 4.522 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.196 5.196 24 N -0.080 5.080 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.204 0.796 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.012 0.988 37 H 0.032 0.968 38 H 0.095 0.905 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -17.187 -6.296 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.028 4.028 4 C 0.006 3.994 5 N -0.154 5.154 6 C -0.068 4.068 7 C -0.219 4.219 8 C 0.368 3.632 9 O -0.432 6.432 10 N -0.302 5.302 11 C -0.060 4.060 12 C 0.157 3.843 13 H 0.082 0.918 14 C -0.206 4.206 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.070 5.070 24 N -0.060 5.060 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.031 0.969 37 H 0.051 0.949 38 H 0.113 0.887 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.721 -17.026 -6.924 22.353 hybrid contribution -0.258 0.766 1.077 1.347 sum -12.979 -16.260 -5.846 21.611 Atomic orbital electron populations 1.22794 0.79775 1.03164 1.00539 1.87769 1.20709 1.26662 1.95638 1.22644 0.92102 0.85594 1.02460 1.21605 0.92980 0.78465 1.06328 1.50221 1.31141 1.13302 1.20736 1.23369 0.92553 0.95182 0.95667 1.21933 1.06355 0.95532 0.98123 1.16827 0.80597 0.81500 0.84297 1.90754 1.54337 1.76093 1.21968 1.48117 1.41296 1.15799 1.24942 1.21902 0.96970 1.00731 0.86430 1.19024 0.84736 0.88163 0.92372 0.91756 1.22107 1.00453 0.99001 0.99021 1.21328 0.96780 0.98939 1.39056 0.92169 1.24883 0.94865 0.98638 0.95418 1.69880 1.07127 1.33999 1.41766 0.86485 0.79102 0.82844 0.78905 1.20654 1.21162 1.19888 1.74846 1.03900 1.17929 1.10306 1.81952 1.20672 0.90852 1.12483 0.93690 0.93595 0.89106 0.92268 0.91246 0.87609 0.86922 0.77885 0.93410 0.91283 0.90377 0.96911 0.94917 0.88685 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16 3 C 0.05 0.39 6.14 37.16 0.23 0.61 16 4 C 0.13 0.95 6.91 -4.04 -0.03 0.92 16 5 N -0.37 -4.24 3.69 -61.06 -0.23 -4.47 16 6 C 0.09 1.16 11.28 -16.84 -0.19 0.97 16 7 C -0.08 -1.41 6.69 -83.55 -0.56 -1.97 16 8 C 0.58 12.79 7.67 -12.47 -0.10 12.69 16 9 O -0.55 -13.55 16.20 5.28 0.09 -13.47 16 10 N -0.57 -13.11 2.75 -176.49 -0.49 -13.60 16 11 C 0.08 1.64 8.79 59.85 0.53 2.17 16 12 C 0.26 6.75 2.63 -69.08 -0.18 6.57 16 13 H 0.06 1.92 6.90 -51.93 -0.36 1.56 16 14 C -0.15 -3.61 8.96 37.16 0.33 -3.27 16 15 C -0.52 -14.52 8.37 -34.44 -0.29 -14.80 16 16 H 0.06 1.67 7.65 -52.49 -0.40 1.27 16 17 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 18 N -0.89 -25.41 11.32 55.43 0.63 -24.78 16 19 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 N -0.20 -3.33 8.81 32.85 0.29 -3.04 16 24 N -0.08 -1.17 13.65 60.35 0.82 -0.35 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.20 2.06 8.06 -52.48 -0.42 1.63 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 35 H 0.08 1.41 5.30 -51.93 -0.28 1.13 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.03 0.74 6.67 -51.93 -0.35 0.40 16 38 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 330.35 15.07 4.98 4.98 Total: -1.00 -33.12 330.35 -3.93 -37.05 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.39 Total: -2.15 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 0.76 Total: 6.87 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 1.03 Total: -46.24 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.29 Total: -16.93 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.12 -3.93 -37.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518824111.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.728 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds