Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50692 * 120.00220 * 2 1 4 4 C 1.50707 * 119.99590 * 180.28223 * 2 1 3 5 5 H 1.09000 * 110.33096 * 133.77954 * 4 2 1 6 6 O 1.44427 * 110.37136 * 11.52888 * 4 2 1 7 7 C 1.44430 * 105.26921 * 200.65640 * 6 4 2 8 8 C 1.54471 * 104.80381 * 40.51432 * 7 6 4 9 9 C 1.54478 * 110.36890 * 256.14818 * 4 2 1 10 10 H 1.09004 * 110.50818 * 261.45627 * 9 4 2 11 11 C 1.50693 * 110.51505 * 24.16724 * 9 4 2 12 12 O 1.20829 * 120.00236 * 80.07529 * 11 9 4 13 13 O 1.34231 * 120.00033 * 260.08294 * 11 9 4 14 14 C 1.45203 * 116.99955 * 179.97438 * 13 11 9 15 15 C 1.52997 * 109.46860 * 179.97438 * 14 13 11 16 16 C 1.52993 * 109.47676 * 300.00407 * 15 14 13 17 17 C 1.53004 * 109.47219 * 60.00438 * 15 14 13 18 18 C 1.50701 * 109.47079 * 180.02562 * 15 14 13 19 19 H 1.08001 * 119.99886 * 0.02562 * 18 15 14 20 20 C 1.37870 * 120.00272 * 180.02562 * 18 15 14 21 21 N 1.31513 * 120.00247 * 0.02562 * 20 18 15 22 22 Si 1.86810 * 120.00202 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.47137 * 90.00020 * 22 20 18 24 24 H 1.48506 * 109.46740 * 209.99880 * 22 20 18 25 25 H 1.48499 * 109.46963 * 329.99844 * 22 20 18 26 26 H 1.08001 * 119.99579 * 359.72150 * 1 2 3 27 27 H 1.07996 * 120.00172 * 179.72297 * 1 2 3 28 28 H 1.08997 * 109.47115 * 4.69121 * 3 2 1 29 29 H 1.09005 * 109.46947 * 124.68172 * 3 2 1 30 30 H 1.08997 * 109.47642 * 244.68512 * 3 2 1 31 31 H 1.08997 * 110.36705 * 159.34321 * 7 6 4 32 32 H 1.08998 * 110.37109 * 281.56666 * 7 6 4 33 33 H 1.09005 * 110.51085 * 94.66527 * 8 7 6 34 34 H 1.08999 * 110.51082 * 217.23472 * 8 7 6 35 35 H 1.08997 * 109.47557 * 300.00189 * 14 13 11 36 36 H 1.09004 * 109.46811 * 60.00337 * 14 13 11 37 37 H 1.09000 * 109.47142 * 59.99556 * 16 15 14 38 38 H 1.09005 * 109.47629 * 180.02562 * 16 15 14 39 39 H 1.09004 * 109.47316 * 300.00015 * 16 15 14 40 40 H 1.09006 * 109.46838 * 59.99413 * 17 15 14 41 41 H 1.08999 * 109.47328 * 179.97438 * 17 15 14 42 42 H 1.09000 * 109.46675 * 299.99878 * 17 15 14 43 43 H 0.97002 * 120.00401 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0064 5 1 2.8653 -1.2760 -0.7443 6 8 1.1659 -2.4025 -0.2824 7 6 1.8406 -3.5796 0.2128 8 6 2.4825 -3.1352 1.5457 9 6 2.6326 -1.6044 1.3982 10 1 3.6824 -1.3164 1.4542 11 6 1.8307 -0.8910 2.4559 12 8 0.7789 -1.3527 2.8308 13 8 2.2847 0.2577 2.9815 14 6 1.4598 0.8902 3.9953 15 6 2.1356 2.1772 4.4726 16 6 3.5062 1.8441 5.0652 17 6 2.3099 3.1309 3.2890 18 6 1.2798 2.8333 5.5253 19 1 0.3473 2.3778 5.8242 20 6 1.6871 4.0152 6.1067 21 7 2.8223 4.5703 5.7423 22 14 0.6266 4.8283 7.4120 23 1 1.0173 4.3229 8.7526 24 1 0.8209 6.2997 7.3617 25 1 -0.8014 4.5086 7.1593 26 1 -0.5399 0.9353 0.0045 27 1 -0.5400 -0.9352 -0.0045 28 1 1.3583 2.1318 0.0840 29 1 2.7517 1.3272 0.8451 30 1 2.6258 1.4000 -0.9289 31 1 1.1243 -4.3828 0.3858 32 1 2.6079 -3.9015 -0.4912 33 1 1.8283 -3.3758 2.3837 34 1 3.4570 -3.6058 1.6758 35 1 0.4832 1.1272 3.5733 36 1 1.3360 0.2109 4.8388 37 1 4.1254 1.3692 4.3042 38 1 3.9875 2.7609 5.4057 39 1 3.3821 1.1646 5.9085 40 1 1.3334 3.3682 2.8668 41 1 2.7910 4.0480 3.6291 42 1 2.9292 2.6561 2.5280 43 1 3.1091 5.4017 6.1516 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525294852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = -122.799728 kcal Electronic energy + Delta-G solvation = -23843.755445 eV Core-core repulsion = 20468.470488 eV Total energy + Delta-G solvation = -3375.284957 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.73583 -38.88939 -36.46002 -35.01672 -34.75496 -32.43672 -31.23655 -28.92219 -27.02697 -25.91307 -25.60502 -25.16211 -23.86045 -22.41270 -20.21221 -18.83540 -18.58553 -17.40297 -16.47594 -16.25937 -15.75813 -15.59301 -15.46421 -15.02834 -14.59808 -13.83716 -13.51131 -13.14474 -12.94620 -12.82502 -12.73531 -12.25879 -12.10139 -11.88254 -11.65658 -11.43380 -11.29978 -11.20163 -11.12123 -10.95869 -10.83947 -10.70444 -10.40248 -10.20540 -10.08945 -9.86738 -9.82983 -9.39414 -9.29080 -8.90953 -8.74524 -8.37431 -6.01987 -4.13319 2.31209 2.62854 3.20231 3.27624 3.34612 3.39473 3.70932 4.29195 4.38509 4.62551 4.85741 4.90868 5.06940 5.08606 5.24518 5.26606 5.34669 5.49265 5.57134 5.62974 5.74660 5.89863 5.92139 6.12003 6.12502 6.14309 6.30600 6.48637 6.53757 6.76104 6.78399 6.98590 7.03617 7.10607 7.14396 7.18692 7.41555 7.62461 7.70146 8.05417 8.16307 8.32189 8.41185 8.86563 9.52214 10.99082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029118 B = 0.004517 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.387848 B = 6197.165811 C = 6402.712290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.152 4.152 3 C -0.118 4.118 4 C 0.132 3.868 5 H 0.090 0.910 6 O -0.361 6.361 7 C 0.049 3.951 8 C -0.145 4.145 9 C -0.114 4.114 10 H 0.114 0.886 11 C 0.469 3.531 12 O -0.511 6.511 13 O -0.345 6.345 14 C 0.087 3.913 15 C 0.071 3.929 16 C -0.129 4.129 17 C -0.127 4.127 18 C -0.511 4.511 19 H 0.056 0.944 20 C 0.069 3.931 21 N -0.882 5.882 22 Si 0.894 3.106 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.016 0.984 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.022 0.978 41 H 0.083 0.917 42 H 0.018 0.982 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -11.432 -11.591 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.174 4.174 4 C 0.074 3.926 5 H 0.107 0.893 6 O -0.280 6.280 7 C -0.028 4.028 8 C -0.183 4.183 9 C -0.134 4.134 10 H 0.133 0.867 11 C 0.311 3.689 12 O -0.400 6.400 13 O -0.261 6.261 14 C 0.014 3.986 15 C 0.071 3.929 16 C -0.187 4.187 17 C -0.185 4.185 18 C -0.549 4.549 19 H 0.074 0.926 20 C -0.133 4.133 21 N -0.520 5.520 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.102 0.898 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.101 0.899 42 H 0.037 0.963 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.972 -11.340 -11.503 16.272 hybrid contribution -0.533 0.380 1.008 1.202 sum 1.439 -10.960 -10.494 15.242 Atomic orbital electron populations 1.23797 0.95372 1.02260 0.97567 1.21524 0.95865 0.93991 1.03846 1.20892 1.00863 0.93226 1.02451 1.21635 0.91606 0.86659 0.92726 0.89287 1.89163 1.41735 1.15610 1.81460 1.23383 0.96819 0.89287 0.93322 1.23015 1.02714 0.92179 1.00356 1.22408 1.01533 0.95738 0.93701 0.86740 1.22882 0.84756 0.80238 0.81003 1.90608 1.23171 1.66460 1.59722 1.86501 1.51722 1.35047 1.52824 1.23615 0.93152 0.95213 0.86630 1.18226 0.93495 0.87605 0.93619 1.21767 0.97968 1.01373 0.97556 1.21772 0.98579 1.02066 0.96063 1.20939 1.05993 1.07141 1.20854 0.92617 1.24840 0.95092 0.96706 0.96639 1.69826 1.20798 1.19065 1.42347 0.86564 0.80827 0.78519 0.81919 1.20662 1.21149 1.19919 0.88308 0.87527 0.91418 0.89950 0.91986 0.88711 0.91963 0.88995 0.89470 0.92712 0.92882 0.96510 0.89778 0.95947 0.95920 0.89872 0.96335 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 13.52 29.01 0.39 -1.92 16 2 C -0.15 -2.18 3.75 -101.07 -0.38 -2.56 16 3 C -0.12 -1.60 10.04 36.00 0.36 -1.24 16 4 C 0.13 1.68 3.54 -27.10 -0.10 1.59 16 5 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 6 O -0.36 -4.87 9.88 -35.23 -0.35 -5.22 16 7 C 0.05 0.49 7.63 37.93 0.29 0.78 16 8 C -0.15 -1.58 6.59 -25.17 -0.17 -1.74 16 9 C -0.11 -1.50 3.53 -90.21 -0.32 -1.82 16 10 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 11 C 0.47 8.33 5.16 36.00 0.19 8.52 16 12 O -0.51 -10.42 15.69 -18.75 -0.29 -10.72 16 13 O -0.35 -6.76 7.65 -39.26 -0.30 -7.06 16 14 C 0.09 1.93 4.26 37.16 0.16 2.08 16 15 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 16 C -0.13 -3.07 8.11 37.15 0.30 -2.77 16 17 C -0.13 -2.98 8.11 37.16 0.30 -2.68 16 18 C -0.51 -13.62 8.01 -34.44 -0.28 -13.90 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 21 N -0.88 -23.76 9.35 55.43 0.52 -23.24 16 22 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 26 H 0.10 1.40 7.84 -52.49 -0.41 0.99 16 27 H 0.11 1.68 6.96 -52.49 -0.37 1.32 16 28 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 29 H 0.08 1.24 6.00 -51.93 -0.31 0.93 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.05 1.21 8.13 -51.93 -0.42 0.78 16 37 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 38 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 42 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 43 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -29.27 341.05 -6.74 -36.01 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.01 Total: 1.60 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 0.57 Total: -12.30 kcal Atomic # 7 Polarization: -23.76 SS G_CDS: 0.52 Total: -23.24 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.94 Total: -23.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.27 -6.74 -36.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525294852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.789 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds