Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47100 * 2 1 4 4 C 1.33323 * 122.71367 * 84.97198 * 3 2 1 5 5 S 1.76162 * 108.09800 * 180.02562 * 4 3 2 6 6 C 1.70968 * 90.35471 * 0.02562 * 5 4 3 7 7 N 1.38609 * 124.94860 * 179.97438 * 6 5 4 8 8 C 1.46493 * 120.00235 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47176 * 89.99714 * 8 7 6 10 10 H 1.08001 * 119.99783 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00176 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00259 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00038 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46913 * 90.00052 * 13 11 9 15 15 H 1.48504 * 109.46969 * 209.99726 * 13 11 9 16 16 H 1.48490 * 109.47034 * 329.99842 * 13 11 9 17 17 C 1.46507 * 120.00066 * 0.02562 * 7 6 5 18 18 C 1.53006 * 109.46840 * 90.00010 * 17 7 6 19 19 C 1.52997 * 109.46968 * 59.99971 * 18 17 7 20 20 C 1.52993 * 109.47162 * 180.02562 * 18 17 7 21 21 C 1.53004 * 109.46929 * 300.00201 * 18 17 7 22 22 N 1.29683 * 110.10323 * 359.97438 * 6 5 4 23 23 H 1.09007 * 109.46961 * 60.00407 * 1 2 3 24 24 H 1.08999 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47349 * 299.99999 * 1 2 3 26 26 H 1.09002 * 109.47130 * 239.99498 * 2 1 3 27 27 H 1.09002 * 109.46540 * 119.99452 * 2 1 3 28 28 H 1.08007 * 125.94910 * 0.04887 * 4 3 2 29 29 H 1.08996 * 109.47608 * 209.99819 * 8 7 6 30 30 H 1.09000 * 109.47003 * 330.00399 * 8 7 6 31 31 H 0.96992 * 120.00138 * 179.97438 * 12 11 9 32 32 H 1.08990 * 109.47199 * 209.99961 * 17 7 6 33 33 H 1.09002 * 109.46845 * 330.00364 * 17 7 6 34 34 H 1.09003 * 109.47456 * 60.00213 * 19 18 17 35 35 H 1.09004 * 109.47056 * 179.97438 * 19 18 17 36 36 H 1.09003 * 109.47563 * 300.00038 * 19 18 17 37 37 H 1.08993 * 109.47283 * 59.99796 * 20 18 17 38 38 H 1.08994 * 109.47551 * 180.02562 * 20 18 17 39 39 H 1.09007 * 109.46853 * 300.00070 * 20 18 17 40 40 H 1.08994 * 109.46970 * 60.00356 * 21 18 17 41 41 H 1.09004 * 109.46633 * 180.02562 * 21 18 17 42 42 H 1.08993 * 109.46958 * 299.99862 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.1798 2.1329 1.1174 5 16 2.7841 3.7273 0.6746 6 6 2.7797 3.2822 -0.9761 7 7 3.1669 4.1057 -2.0216 8 6 3.1193 3.6114 -3.3998 9 6 1.7682 3.9131 -3.9954 10 1 1.0200 4.4226 -3.4063 11 6 1.4873 3.5388 -5.2923 12 7 2.3986 2.9188 -6.0099 13 14 -0.1872 3.9135 -6.0307 14 1 -0.1523 5.2458 -6.6860 15 1 -0.5278 2.8758 -7.0370 16 1 -1.2123 3.9168 -4.9565 17 6 3.6237 5.4707 -1.7484 18 6 5.1379 5.4672 -1.5285 19 6 5.8343 4.9379 -2.7837 20 6 5.6149 6.8925 -1.2425 21 6 5.4783 4.5676 -0.3386 22 7 2.3613 2.0617 -1.1076 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.9664 1.7915 2.1197 29 1 3.8938 4.1023 -3.9889 30 1 3.2863 2.5343 -3.4054 31 1 2.2008 2.6552 -6.9221 32 1 3.3812 6.1115 -2.5961 33 1 3.1275 5.8477 -0.8541 34 1 5.5918 5.5787 -3.6314 35 1 6.9130 4.9358 -2.6272 36 1 5.4944 3.9224 -2.9870 37 1 5.1187 7.2692 -0.3482 38 1 6.6936 6.8901 -1.0863 39 1 5.3723 7.5337 -2.0900 40 1 5.1384 3.5522 -0.5419 41 1 6.5569 4.5655 -0.1816 42 1 4.9821 4.9447 0.5556 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559156627.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = 30.527070 kcal Electronic energy + Delta-G solvation = -21034.807154 eV Core-core repulsion = 18141.216568 eV Total energy + Delta-G solvation = -2893.590586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.29757 -38.05147 -34.73912 -32.92841 -32.14792 -28.51807 -27.92602 -27.10956 -26.80266 -25.53725 -24.17461 -23.02984 -20.67137 -19.02598 -18.39369 -17.21880 -16.53322 -15.67137 -15.01329 -14.83404 -14.31969 -14.25339 -13.81178 -13.65709 -13.39882 -13.23206 -12.57091 -12.45417 -12.30166 -12.05796 -11.90740 -11.58115 -11.38356 -11.29609 -11.20849 -11.04555 -10.88154 -10.81497 -10.67747 -10.52466 -10.34375 -10.19181 -10.07159 -9.74350 -8.94876 -8.65104 -8.42585 -8.34630 -6.72731 -6.01519 -4.08611 1.73328 1.88392 2.48199 3.28970 3.35931 3.40380 3.68821 3.75485 4.43529 4.98559 5.01752 5.10161 5.21707 5.29591 5.42731 5.57474 5.68338 5.71293 5.75790 5.79896 5.90595 5.95073 6.00847 6.09839 6.11671 6.12348 6.13578 6.25675 6.34175 6.40677 6.49460 6.51948 6.61268 6.69543 6.82017 6.96540 7.41288 7.77261 7.92526 8.10269 8.23491 8.83252 8.96326 9.55461 11.02896 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.008616 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.796550 B = 3249.056661 C = 5276.102232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.129 3.871 4 C -0.339 4.339 5 S 0.026 5.974 6 C 0.358 3.642 7 N -0.552 5.552 8 C 0.256 3.744 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.063 3.937 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.132 3.868 18 C -0.089 4.089 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.143 4.143 22 N -0.544 5.544 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.158 0.842 29 H 0.042 0.958 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 2.350 12.453 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.089 4.089 3 C -0.003 4.003 4 C -0.481 4.481 5 S 0.275 5.725 6 C -0.013 4.013 7 N -0.266 5.266 8 C 0.135 3.865 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.533 5.533 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 C 0.008 3.992 18 C -0.090 4.090 19 C -0.198 4.198 20 C -0.195 4.195 21 C -0.201 4.201 22 N -0.270 5.270 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.176 0.824 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.362 3.096 12.107 13.236 hybrid contribution -1.316 -0.634 -0.520 1.551 sum 3.047 2.462 11.586 12.231 Atomic orbital electron populations 1.21693 0.94717 1.01256 1.02359 1.20075 0.95890 0.90297 1.02638 1.19838 0.96917 0.97104 0.86488 1.25839 1.22410 0.97094 1.02728 1.83574 1.67685 1.17853 1.03407 1.23606 0.95230 0.91112 0.91344 1.46736 1.64271 1.10308 1.05311 1.19512 0.97130 0.96368 0.73453 1.21449 0.99246 1.38020 0.97536 0.92638 1.24881 0.97032 0.95020 0.96915 1.69921 1.33748 1.39905 1.09750 0.86551 0.84397 0.77885 0.78914 1.20718 1.21117 1.19985 1.21608 0.92652 0.83195 1.01756 1.21078 0.95805 0.95678 0.96471 1.21951 0.98914 1.02582 0.96356 1.21795 1.00873 0.95399 1.01387 1.22095 1.00770 1.00154 0.97081 1.66313 1.24613 1.06367 1.29698 0.92065 0.92605 0.92946 0.90299 0.91007 0.82405 0.94041 0.93649 0.92772 0.89170 0.91859 0.92426 0.93496 0.91299 0.92799 0.92605 0.92461 0.92348 0.93017 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.89 37.16 0.37 -1.64 16 2 C -0.05 -0.75 6.34 -27.88 -0.18 -0.92 16 3 C 0.13 2.41 5.99 -84.18 -0.50 1.91 16 4 C -0.34 -5.65 11.11 29.02 0.32 -5.32 16 5 S 0.03 0.44 18.47 -107.50 -1.99 -1.55 16 6 C 0.36 7.45 6.20 -87.68 -0.54 6.91 16 7 N -0.55 -11.57 2.06 -177.39 -0.37 -11.94 16 8 C 0.26 6.42 4.19 -5.19 -0.02 6.40 16 9 C -0.52 -14.51 9.39 -34.44 -0.32 -14.84 16 10 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 11 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 13 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 17 C 0.13 2.25 4.58 -4.03 -0.02 2.23 16 18 C -0.09 -1.28 0.84 -154.51 -0.13 -1.41 16 19 C -0.14 -2.20 7.23 37.16 0.27 -1.93 16 20 C -0.14 -1.58 8.47 37.15 0.31 -1.26 16 21 C -0.14 -2.05 6.88 37.16 0.26 -1.79 16 22 N -0.54 -12.14 9.80 -11.36 -0.11 -12.25 16 23 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.16 2.17 8.06 -52.48 -0.42 1.75 16 29 H 0.04 1.05 6.05 -51.93 -0.31 0.74 16 30 H 0.05 1.29 7.62 -51.93 -0.40 0.89 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.09 1.57 8.07 -51.93 -0.42 1.15 16 33 H 0.06 1.00 7.04 -51.93 -0.37 0.63 16 34 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.27 5.99 -51.93 -0.31 0.96 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 40 H 0.06 0.99 5.98 -51.93 -0.31 0.68 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.79 6.70 -51.93 -0.35 0.44 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.01 342.18 -8.96 -38.97 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.08 Total: 0.10 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.29 Total: -9.98 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.26 Total: -49.47 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 0.44 SS G_CDS: -1.99 Total: -1.55 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.01 -8.96 -38.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559156627.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.498 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds