Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46964 * 2 1 4 4 C 1.53002 * 109.46640 * 240.00742 * 2 1 3 5 5 N 1.46498 * 109.47292 * 120.00747 * 2 1 3 6 6 C 1.35307 * 125.87076 * 75.00180 * 5 2 1 7 7 C 1.35350 * 106.17494 * 180.02562 * 6 5 2 8 8 C 1.50701 * 126.75062 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47401 * 94.99400 * 8 7 6 10 10 C 1.36934 * 120.00022 * 89.99502 * 9 8 7 11 11 H 1.08001 * 119.99912 * 9.32084 * 10 9 8 12 12 C 1.38809 * 120.00321 * 189.31210 * 10 9 8 13 13 N 1.31617 * 119.99780 * 24.78524 * 12 10 9 14 14 Si 1.86799 * 120.00379 * 204.78680 * 12 10 9 15 15 H 1.48499 * 109.47413 * 89.99606 * 14 12 10 16 16 H 1.48497 * 109.47662 * 210.00194 * 14 12 10 17 17 H 1.48512 * 109.47063 * 330.00159 * 14 12 10 18 18 C 1.46497 * 119.99995 * 270.00346 * 9 8 7 19 19 C 1.50703 * 109.47317 * 89.05655 * 18 9 8 20 20 O 1.20822 * 119.99953 * 359.97438 * 19 18 9 21 21 O 1.34234 * 119.99693 * 179.97438 * 19 18 9 22 22 N 1.33763 * 106.49939 * 359.97438 * 7 6 5 23 23 N 1.28635 * 108.88584 * 0.02562 * 22 7 6 24 24 H 1.09005 * 109.46790 * 299.99126 * 1 2 3 25 25 H 1.08998 * 109.47223 * 59.99303 * 1 2 3 26 26 H 1.08996 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47720 * 300.00392 * 3 2 1 29 29 H 1.08998 * 109.46844 * 60.01133 * 3 2 1 30 30 H 1.09004 * 109.46906 * 299.99606 * 4 2 1 31 31 H 1.08998 * 109.47350 * 60.00032 * 4 2 1 32 32 H 1.09001 * 109.47139 * 179.97438 * 4 2 1 33 33 H 1.08006 * 126.90905 * 0.02562 * 6 5 2 34 34 H 1.08996 * 109.47099 * 214.99638 * 8 7 6 35 35 H 1.08998 * 109.47301 * 334.99668 * 8 7 6 36 36 H 0.97002 * 120.00268 * 179.97438 * 13 12 10 37 37 H 1.09007 * 109.47002 * 209.05377 * 18 9 8 38 38 H 1.08998 * 109.47290 * 329.05322 * 18 9 8 39 39 H 0.96705 * 116.99261 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 2.0184 -0.6907 1.1961 6 6 2.0152 -2.0290 1.3956 7 6 2.5508 -2.2286 2.6225 8 6 2.7665 -3.5534 3.3076 9 7 4.1363 -4.0121 3.0637 10 6 5.1396 -3.6617 3.9272 11 1 4.9021 -3.1780 4.8632 12 6 6.4619 -3.9283 3.5997 13 7 6.8159 -4.0484 2.3378 14 14 7.7389 -4.1168 4.9500 15 1 7.8143 -5.5407 5.3648 16 1 9.0639 -3.6780 4.4431 17 1 7.3536 -3.2814 6.1158 18 6 4.4327 -4.8454 1.8958 19 6 4.7659 -3.9629 0.7205 20 8 4.7562 -2.7612 0.8454 21 8 5.0734 -4.5121 -0.4651 22 7 2.8520 -1.0187 3.1069 23 7 2.5241 -0.1288 2.2378 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7488 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1299 -0.7208 -1.2497 33 1 1.6572 -2.7857 0.7131 34 1 2.6074 -3.4382 4.3797 35 1 2.0624 -4.2857 2.9124 36 1 7.7400 -4.2344 2.1088 37 1 5.2820 -5.4919 2.1170 38 1 3.5632 -5.4572 1.6559 39 1 5.2804 -3.9055 -1.1893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590593673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = 37.042429 kcal Electronic energy + Delta-G solvation = -23783.848629 eV Core-core repulsion = 20344.247356 eV Total energy + Delta-G solvation = -3439.601273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.43881 -38.61127 -37.19154 -35.74363 -34.29112 -32.06567 -31.04121 -30.20139 -27.82753 -27.60381 -27.20846 -25.64184 -23.03904 -22.48961 -20.57933 -20.07802 -19.02074 -16.83261 -16.73686 -16.48912 -15.78666 -15.12533 -15.05748 -14.25814 -14.19700 -14.02193 -13.85623 -13.41306 -13.32724 -13.18111 -12.53801 -12.50596 -12.22924 -11.90550 -11.80507 -11.42696 -11.35204 -11.29780 -11.00738 -10.89902 -10.70864 -10.56043 -10.14485 -9.96258 -9.93788 -9.76550 -9.22029 -9.11266 -8.52403 -8.21319 -7.12552 -5.88437 -3.14260 2.41326 2.88100 3.41272 3.48073 3.50472 3.56939 3.99043 4.40068 4.41875 4.62431 4.63922 4.72427 5.09380 5.29164 5.34100 5.34879 5.48284 5.49592 5.54355 5.58055 5.66498 5.71583 5.82540 5.92168 6.06389 6.12264 6.27200 6.32719 6.58148 6.79883 6.95564 7.09227 7.09784 7.39203 7.80750 7.92800 8.18962 9.07146 9.44875 9.52220 9.75330 10.14406 11.23381 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.006103 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.535820 B = 4586.703585 C = 5031.506414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 C -0.146 4.146 4 C -0.156 4.156 5 N -0.286 5.286 6 C -0.049 4.049 7 C -0.004 4.004 8 C 0.217 3.783 9 N -0.554 5.554 10 C -0.238 4.238 11 H 0.086 0.914 12 C -0.003 4.003 13 N -0.907 5.907 14 Si 0.911 3.089 15 H -0.287 1.287 16 H -0.295 1.295 17 H -0.278 1.278 18 C 0.187 3.813 19 C 0.473 3.527 20 O -0.504 6.504 21 O -0.547 6.547 22 N -0.255 5.255 23 N -0.104 5.104 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.255 0.745 37 H 0.115 0.885 38 H 0.051 0.949 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.689 2.200 -8.705 15.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 C -0.204 4.204 4 C -0.214 4.214 5 N -0.081 5.081 6 C -0.200 4.200 7 C -0.145 4.145 8 C 0.088 3.912 9 N -0.273 5.273 10 C -0.367 4.367 11 H 0.104 0.896 12 C -0.200 4.200 13 N -0.553 5.553 14 Si 0.741 3.259 15 H -0.214 1.214 16 H -0.222 1.222 17 H -0.204 1.204 18 C 0.057 3.943 19 C 0.312 3.688 20 O -0.388 6.388 21 O -0.358 6.358 22 N -0.122 5.122 23 N -0.082 5.082 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.182 0.818 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.133 0.867 38 H 0.069 0.931 39 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.226 3.592 -7.677 14.877 hybrid contribution 0.975 -0.337 -0.928 1.388 sum -11.251 3.255 -8.606 14.534 Atomic orbital electron populations 1.22212 0.92646 1.03213 1.03322 1.20889 0.94629 0.93890 0.82179 1.21943 1.02741 0.92672 1.02998 1.22185 1.03043 1.00735 0.95428 1.47283 1.41113 1.05560 1.14168 1.22834 1.10648 0.86020 1.00469 1.23263 0.99783 0.97079 0.94352 1.19454 0.86961 0.86414 0.98365 1.44554 1.03726 1.55331 1.23667 1.19421 0.85633 1.34954 0.96726 0.89607 1.24764 0.97051 1.02068 0.96088 1.69844 1.17267 1.53080 1.15089 0.86113 0.80452 0.77892 0.81413 1.21402 1.22155 1.20370 1.20528 1.00079 0.91362 0.82298 1.25325 0.71780 0.89971 0.81763 1.90556 1.48690 1.17018 1.82582 1.84664 1.82892 1.45962 1.22265 1.74951 1.16555 0.98563 1.22097 1.78088 1.14649 1.22986 0.92482 0.91536 0.90331 0.91649 0.91281 0.90904 0.90853 0.91638 0.90387 0.91026 0.81826 0.90927 0.92148 0.93421 0.86689 0.93122 0.76997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.72 37.16 0.32 -1.21 16 2 C 0.17 2.16 1.23 -131.82 -0.16 2.00 16 3 C -0.15 -1.77 8.05 37.16 0.30 -1.47 16 4 C -0.16 -1.79 8.29 37.16 0.31 -1.48 16 5 N -0.29 -5.10 3.18 -48.55 -0.15 -5.25 16 6 C -0.05 -0.90 9.39 -17.05 -0.16 -1.06 16 7 C 0.00 -0.08 5.63 -82.78 -0.47 -0.55 16 8 C 0.22 4.43 6.27 -5.19 -0.03 4.40 16 9 N -0.55 -13.32 2.09 -175.98 -0.37 -13.69 16 10 C -0.24 -6.48 9.70 -15.06 -0.15 -6.63 16 11 H 0.09 2.37 7.93 -52.49 -0.42 1.95 16 12 C 0.00 -0.08 4.89 -17.43 -0.09 -0.16 16 13 N -0.91 -25.91 9.03 55.49 0.50 -25.41 16 14 Si 0.91 22.17 29.62 -169.99 -5.04 17.13 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 18 C 0.19 4.23 5.58 -5.19 -0.03 4.20 16 19 C 0.47 11.06 6.43 36.01 0.23 11.29 16 20 O -0.50 -13.37 14.36 -18.75 -0.27 -13.64 16 21 O -0.55 -11.01 13.42 -39.27 -0.53 -11.54 16 22 N -0.25 -6.11 12.41 33.29 0.41 -5.70 16 23 N -0.10 -2.24 12.18 60.35 0.74 -1.51 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 30 H 0.06 0.73 7.39 -51.93 -0.38 0.35 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.16 2.55 7.59 -52.48 -0.40 2.15 16 34 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.06 1.00 7.90 -51.93 -0.41 0.59 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.12 2.85 6.28 -51.92 -0.33 2.52 16 38 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 39 H 0.37 6.16 9.10 45.56 0.41 6.58 16 LS Contribution 327.25 15.07 4.93 4.93 Total: -1.00 -35.20 327.25 -4.55 -39.75 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.86 Total: 5.61 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: 0.08 Total: 9.32 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 1.13 Total: -51.56 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.80 Total: -25.18 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.04 Total: 17.13 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.20 -4.55 -39.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590593673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.795 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds