Wall clock time and date at job start Tue Mar 31 2020 05:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46964 * 2 1 4 4 C 1.53002 * 109.46640 * 240.00742 * 2 1 3 5 5 N 1.46498 * 109.47292 * 120.00747 * 2 1 3 6 6 C 1.35307 * 125.87076 * 75.00180 * 5 2 1 7 7 C 1.35350 * 106.17494 * 180.02562 * 6 5 2 8 8 C 1.50701 * 126.75062 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.47401 * 94.99400 * 8 7 6 10 10 C 1.36934 * 120.00022 * 89.99502 * 9 8 7 11 11 H 1.08001 * 119.99912 * 9.32084 * 10 9 8 12 12 C 1.38809 * 120.00321 * 189.31210 * 10 9 8 13 13 N 1.31617 * 119.99780 * 24.78524 * 12 10 9 14 14 Si 1.86799 * 120.00379 * 204.78680 * 12 10 9 15 15 H 1.48499 * 109.47413 * 89.99606 * 14 12 10 16 16 H 1.48497 * 109.47662 * 210.00194 * 14 12 10 17 17 H 1.48512 * 109.47063 * 330.00159 * 14 12 10 18 18 C 1.46497 * 119.99995 * 270.00346 * 9 8 7 19 19 C 1.50703 * 109.47317 * 89.05655 * 18 9 8 20 20 O 1.20822 * 119.99953 * 359.97438 * 19 18 9 21 21 O 1.34234 * 119.99693 * 179.97438 * 19 18 9 22 22 N 1.33763 * 106.49939 * 359.97438 * 7 6 5 23 23 N 1.28635 * 108.88584 * 0.02562 * 22 7 6 24 24 H 1.09005 * 109.46790 * 299.99126 * 1 2 3 25 25 H 1.08998 * 109.47223 * 59.99303 * 1 2 3 26 26 H 1.08996 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47720 * 300.00392 * 3 2 1 29 29 H 1.08998 * 109.46844 * 60.01133 * 3 2 1 30 30 H 1.09004 * 109.46906 * 299.99606 * 4 2 1 31 31 H 1.08998 * 109.47350 * 60.00032 * 4 2 1 32 32 H 1.09001 * 109.47139 * 179.97438 * 4 2 1 33 33 H 1.08006 * 126.90905 * 0.02562 * 6 5 2 34 34 H 1.08996 * 109.47099 * 214.99638 * 8 7 6 35 35 H 1.08998 * 109.47301 * 334.99668 * 8 7 6 36 36 H 0.97002 * 120.00268 * 179.97438 * 13 12 10 37 37 H 1.09007 * 109.47002 * 209.05377 * 18 9 8 38 38 H 1.08998 * 109.47290 * 329.05322 * 18 9 8 39 39 H 0.96705 * 116.99261 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 2.0184 -0.6907 1.1961 6 6 2.0152 -2.0290 1.3956 7 6 2.5508 -2.2286 2.6225 8 6 2.7665 -3.5534 3.3076 9 7 4.1363 -4.0121 3.0637 10 6 5.1396 -3.6617 3.9272 11 1 4.9021 -3.1780 4.8632 12 6 6.4619 -3.9283 3.5997 13 7 6.8159 -4.0484 2.3378 14 14 7.7389 -4.1168 4.9500 15 1 7.8143 -5.5407 5.3648 16 1 9.0639 -3.6780 4.4431 17 1 7.3536 -3.2814 6.1158 18 6 4.4327 -4.8454 1.8958 19 6 4.7659 -3.9629 0.7205 20 8 4.7562 -2.7612 0.8454 21 8 5.0734 -4.5121 -0.4651 22 7 2.8520 -1.0187 3.1069 23 7 2.5241 -0.1288 2.2378 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6768 1.9562 0.8901 30 1 1.6766 -1.7488 -1.2494 31 1 1.6766 -0.2072 -2.1393 32 1 3.1299 -0.7208 -1.2497 33 1 1.6572 -2.7857 0.7131 34 1 2.6074 -3.4382 4.3797 35 1 2.0624 -4.2857 2.9124 36 1 7.7400 -4.2344 2.1088 37 1 5.2820 -5.4919 2.1170 38 1 3.5632 -5.4572 1.6559 39 1 5.2804 -3.9055 -1.1893 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590593673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:20 Heat of formation + Delta-G solvation = 11.879872 kcal Electronic energy + Delta-G solvation = -23784.939759 eV Core-core repulsion = 20344.247356 eV Total energy + Delta-G solvation = -3440.692403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.92083 -40.40317 -38.33893 -37.46752 -36.09610 -33.86552 -32.50506 -31.88524 -29.34952 -28.54801 -28.41268 -27.34467 -24.41592 -24.30696 -22.17097 -21.74816 -20.37848 -18.74127 -18.35030 -17.84719 -17.32324 -16.90093 -16.73640 -15.90531 -15.68186 -15.29954 -15.20649 -15.06285 -14.83539 -14.65049 -13.60686 -13.52680 -13.31154 -13.27999 -13.20588 -12.87981 -12.83758 -12.67592 -12.53053 -12.35678 -12.30047 -12.06004 -11.98208 -11.92992 -11.76437 -11.36557 -10.98522 -10.67928 -10.48768 -9.79962 -9.04058 -7.95160 -5.20116 0.96952 1.47710 1.49336 1.57406 1.67084 1.92089 2.18281 2.54480 2.88510 3.26643 3.41633 3.68274 3.72986 3.77075 3.79884 4.22620 4.34183 4.52539 4.55320 4.63378 4.67469 4.68493 4.72507 4.75769 4.79515 5.00012 5.01478 5.12508 5.19386 5.24820 5.31962 5.35292 5.55719 5.69435 6.05357 6.22872 6.26075 7.06840 7.69492 7.88294 7.90615 8.16204 9.13888 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.006103 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.535820 B = 4586.703585 C = 5031.506414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 C -0.143 4.143 4 C -0.149 4.149 5 N -0.273 5.273 6 C -0.034 4.034 7 C -0.026 4.026 8 C 0.214 3.786 9 N -0.566 5.566 10 C -0.240 4.240 11 H 0.071 0.929 12 C -0.051 4.051 13 N -0.928 5.928 14 Si 0.965 3.035 15 H -0.275 1.275 16 H -0.306 1.306 17 H -0.281 1.281 18 C 0.184 3.816 19 C 0.478 3.522 20 O -0.540 6.540 21 O -0.539 6.539 22 N -0.310 5.310 23 N -0.132 5.132 24 H 0.054 0.946 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.114 0.886 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.037 0.963 33 H 0.198 0.802 34 H 0.065 0.935 35 H 0.105 0.895 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.772 1.568 -10.699 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.069 3.931 3 C -0.201 4.201 4 C -0.207 4.207 5 N -0.069 5.069 6 C -0.187 4.187 7 C -0.168 4.168 8 C 0.087 3.913 9 N -0.285 5.285 10 C -0.370 4.370 11 H 0.089 0.911 12 C -0.245 4.245 13 N -0.575 5.575 14 Si 0.795 3.205 15 H -0.201 1.201 16 H -0.234 1.234 17 H -0.206 1.206 18 C 0.056 3.944 19 C 0.319 3.681 20 O -0.428 6.428 21 O -0.350 6.350 22 N -0.176 5.176 23 N -0.110 5.110 24 H 0.073 0.927 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.056 0.944 33 H 0.215 0.785 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.056 0.944 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -14.338 2.971 -9.685 17.556 hybrid contribution 1.523 -0.101 -0.436 1.587 sum -12.816 2.870 -10.121 16.580 Atomic orbital electron populations 1.22205 0.89581 1.04143 1.04616 1.21542 0.96907 0.93845 0.80813 1.21966 1.00739 0.92875 1.04488 1.22190 1.00816 1.01638 0.96090 1.47776 1.38969 1.05760 1.14371 1.23216 1.08924 0.86813 0.99709 1.23417 1.01017 0.96686 0.95711 1.19655 0.86005 0.87262 0.98420 1.44569 1.04237 1.55711 1.23944 1.19485 0.86692 1.33820 0.96999 0.91117 1.25348 0.98539 1.02964 0.97658 1.69989 1.16716 1.54696 1.16133 0.85282 0.77840 0.78180 0.79211 1.20088 1.23413 1.20609 1.20548 1.01123 0.91060 0.81709 1.25356 0.70865 0.89378 0.82517 1.90557 1.50353 1.18512 1.83357 1.84585 1.82291 1.46035 1.22077 1.74876 1.18584 1.00013 1.24098 1.77971 1.16115 1.23202 0.93667 0.92679 0.86597 0.90908 0.94369 0.86710 0.92052 0.90896 0.86393 0.94410 0.78522 0.91631 0.87729 0.94393 0.89036 0.88514 0.74907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.72 71.98 0.63 -1.73 16 2 C 0.15 3.53 1.23 3.61 0.00 3.53 16 3 C -0.14 -3.28 8.05 71.98 0.58 -2.70 16 4 C -0.15 -2.97 8.29 71.98 0.60 -2.38 16 5 N -0.27 -9.49 3.18 -307.52 -0.98 -10.47 16 6 C -0.03 -1.20 9.39 83.49 0.78 -0.42 16 7 C -0.03 -1.13 5.63 41.60 0.23 -0.89 16 8 C 0.21 8.53 6.27 85.63 0.54 9.07 16 9 N -0.57 -26.90 2.09 -710.69 -1.48 -28.38 16 10 C -0.24 -13.23 9.70 84.03 0.81 -12.42 16 11 H 0.07 4.02 7.93 -2.91 -0.02 4.00 16 12 C -0.05 -2.85 4.89 84.86 0.41 -2.44 16 13 N -0.93 -53.66 9.03 21.65 0.20 -53.46 16 14 Si 0.97 46.49 29.62 68.60 2.03 48.52 16 15 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.31 -15.24 7.11 99.48 0.71 -14.53 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 C 0.18 8.08 5.58 85.63 0.48 8.56 16 19 C 0.48 21.76 6.43 71.24 0.46 22.22 16 20 O -0.54 -28.51 14.36 21.97 0.32 -28.20 16 21 O -0.54 -20.57 13.42 -51.46 -0.69 -21.26 16 22 N -0.31 -15.24 12.41 -48.60 -0.60 -15.84 16 23 N -0.13 -5.80 12.18 37.02 0.45 -5.35 16 24 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 30 H 0.07 1.34 7.39 -2.38 -0.02 1.33 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.20 5.39 7.59 -2.91 -0.02 5.37 16 34 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 35 H 0.10 3.15 7.90 -2.39 -0.02 3.13 16 36 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.09 4.49 6.28 -2.38 -0.01 4.48 16 38 H 0.10 3.28 7.91 -2.39 -0.02 3.27 16 39 H 0.39 12.13 9.10 -74.05 -0.67 11.45 16 Total: -1.00 -79.57 327.25 5.15 -74.41 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.39 Total: 19.62 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 5.53 Total: 20.41 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -2.42 Total: -113.51 kcal Atomic # 8 Polarization: -49.08 SS G_CDS: -0.38 Total: -49.46 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -79.57 5.15 -74.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590593673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.294 kcal (2) G-P(sol) polarization free energy of solvation -79.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds