Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46850 * 2 1 4 4 C 1.52992 * 109.47245 * 120.00160 * 2 1 3 5 5 N 1.46898 * 109.47430 * 60.95411 * 4 2 1 6 6 C 1.46905 * 111.00080 * 73.48474 * 5 4 2 7 7 C 1.50695 * 109.46883 * 279.61241 * 6 5 4 8 8 H 1.08000 * 120.00803 * 2.96448 * 7 6 5 9 9 C 1.37882 * 119.99946 * 182.96721 * 7 6 5 10 10 N 1.31516 * 119.99592 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00191 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46950 * 359.97438 * 11 9 7 13 13 H 1.48491 * 109.47068 * 120.00399 * 11 9 7 14 14 H 1.48501 * 109.46706 * 240.00274 * 11 9 7 15 15 C 1.46897 * 111.00385 * 197.43798 * 5 4 2 16 16 N 1.46505 * 109.47143 * 66.04662 * 15 5 4 17 17 C 1.34781 * 126.58388 * 94.99493 * 16 15 5 18 18 C 1.36666 * 106.83242 * 180.24220 * 17 16 15 19 19 C 1.47384 * 125.77966 * 179.73798 * 18 17 16 20 20 O 1.21518 * 120.00123 * 0.02562 * 19 18 17 21 21 O 1.34754 * 120.00303 * 179.97438 * 19 18 17 22 22 N 1.34440 * 108.44242 * 359.61323 * 18 17 16 23 23 N 1.28762 * 109.50974 * 0.39789 * 22 18 17 24 24 H 1.09002 * 109.47197 * 299.99814 * 1 2 3 25 25 H 1.08999 * 109.47384 * 59.99916 * 1 2 3 26 26 H 1.09003 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47197 * 240.00185 * 2 1 3 28 28 H 1.08999 * 109.46680 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47177 * 299.99687 * 3 2 1 30 30 H 1.08994 * 109.47226 * 60.00728 * 3 2 1 31 31 H 1.08998 * 109.47572 * 300.95538 * 4 2 1 32 32 H 1.09004 * 109.47604 * 180.95453 * 4 2 1 33 33 H 1.09000 * 109.46796 * 39.60686 * 6 5 4 34 34 H 1.08995 * 109.47331 * 159.61056 * 6 5 4 35 35 H 0.97006 * 119.99324 * 179.97438 * 10 9 7 36 36 H 1.09006 * 109.47176 * 306.04743 * 15 5 4 37 37 H 1.09003 * 109.47327 * 186.04239 * 15 5 4 38 38 H 1.08002 * 126.58525 * 359.97438 * 17 16 15 39 39 H 0.96701 * 117.00679 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 1.5693 -2.1127 1.2377 6 6 2.3024 -2.9083 0.2438 7 6 1.7246 -2.6578 -1.1252 8 1 0.9276 -1.9401 -1.2521 9 6 2.2134 -3.3450 -2.2161 10 7 3.1836 -4.2194 -2.0616 11 14 1.4968 -3.0351 -3.9131 12 1 0.4232 -2.0136 -3.8180 13 1 2.5662 -2.5471 -4.8204 14 1 0.9308 -4.2988 -4.4497 15 6 1.6727 -2.7145 2.5737 16 7 0.7455 -2.0405 3.4861 17 6 -0.5050 -2.4356 3.7970 18 6 -1.0043 -1.5145 4.6745 19 6 -2.3480 -1.5408 5.2796 20 8 -3.1193 -2.4397 5.0078 21 8 -2.7210 -0.5687 6.1350 22 7 -0.0614 -0.5819 4.8946 23 7 0.9886 -0.8605 4.2033 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6628 -0.2175 2.1391 32 1 3.1299 -0.7065 1.2578 33 1 3.3538 -2.6212 0.2525 34 1 2.2127 -3.9668 0.4880 35 1 3.5272 -4.7032 -2.8290 36 1 2.6919 -2.6038 2.9443 37 1 1.4201 -3.7733 2.5159 38 1 -1.0161 -3.3096 3.4211 39 1 -3.6120 -0.6284 6.5060 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591322287.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = 11.995770 kcal Electronic energy + Delta-G solvation = -22653.096263 eV Core-core repulsion = 19212.408886 eV Total energy + Delta-G solvation = -3440.687377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.16582 -39.87120 -37.85441 -36.15862 -34.65577 -33.26295 -32.24949 -31.03135 -27.79273 -26.66901 -26.54042 -24.76597 -23.96591 -22.11878 -21.27376 -20.94418 -19.20883 -18.26648 -17.61455 -16.63136 -16.36757 -15.79741 -15.59174 -14.92652 -14.81999 -14.51825 -14.02611 -13.86090 -13.56883 -13.14648 -12.86881 -12.33820 -12.21502 -12.03912 -11.87073 -11.67041 -11.48538 -11.21220 -11.19363 -10.91826 -10.84328 -10.72240 -10.54987 -10.33547 -10.24951 -10.10326 -9.61790 -9.35277 -9.25046 -8.55108 -7.74520 -6.19099 -4.18975 1.11067 1.55700 2.11066 2.93680 3.02283 3.21866 3.30937 3.34813 4.22567 4.29944 4.50293 4.66286 4.83168 5.10038 5.16406 5.28040 5.50989 5.52862 5.61083 5.81169 5.83069 6.01606 6.15262 6.18813 6.30969 6.33322 6.38049 6.44632 6.54992 6.64039 6.85061 6.99885 7.04604 7.24360 7.58586 7.72366 7.76222 7.89155 8.06460 8.22822 8.87559 9.44474 10.91294 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.004505 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.285891 B = 6213.225764 C = 6492.496492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.104 4.104 3 C -0.144 4.144 4 C 0.066 3.934 5 N -0.544 5.544 6 C 0.198 3.802 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.270 1.270 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.281 3.719 16 N -0.338 5.338 17 C 0.127 3.873 18 C -0.109 4.109 19 C 0.580 3.420 20 O -0.517 6.517 21 O -0.500 6.500 22 N -0.190 5.190 23 N -0.060 5.060 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.003 0.997 34 H 0.032 0.968 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.116 0.884 38 H 0.206 0.794 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 4.310 10.805 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.122 4.122 3 C -0.202 4.202 4 C -0.062 4.062 5 N -0.270 5.270 6 C 0.074 3.926 7 C -0.547 4.547 8 H 0.098 0.902 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.722 3.278 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.070 3.930 16 N -0.121 5.121 17 C -0.033 4.033 18 C -0.246 4.246 19 C 0.423 3.577 20 O -0.405 6.405 21 O -0.310 6.310 22 N -0.065 5.065 23 N -0.042 5.042 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.131 0.869 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.021 0.979 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.134 0.866 38 H 0.223 0.777 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -4.951 5.023 10.584 12.719 hybrid contribution -0.650 -0.842 -0.853 1.364 sum -5.601 4.181 9.731 11.981 Atomic orbital electron populations 1.21646 0.95690 1.02334 0.98956 1.21411 0.95998 0.94251 1.00572 1.21824 1.00479 0.97172 1.00697 1.22170 0.96941 0.88492 0.98584 1.62166 1.59231 1.03438 1.02172 1.19832 0.91455 0.92162 0.89194 1.21349 1.19671 1.23225 0.90437 0.90170 1.24986 0.95092 0.95025 0.99355 1.69951 1.26798 1.25951 1.30908 0.86481 0.79106 0.78239 0.83942 1.19458 1.21057 1.20995 1.22634 0.90202 0.94852 0.85284 1.50871 1.11603 1.18780 1.30849 1.23342 0.85812 0.99868 0.94258 1.20077 0.95855 0.99242 1.09456 1.19128 0.84875 0.78407 0.75339 1.90934 1.52879 1.36135 1.60528 1.84651 1.39389 1.49616 1.57299 1.74753 0.97547 1.20046 1.14166 1.81991 1.17234 0.98016 1.06928 0.94980 0.94323 0.91017 0.86936 0.93283 0.93145 0.93769 0.91771 0.95186 0.97902 0.94964 0.92831 0.90809 0.86595 0.77711 0.72868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 8.40 37.16 0.31 -1.98 16 2 C -0.10 -1.88 2.40 -90.62 -0.22 -2.10 16 3 C -0.14 -2.24 9.19 37.16 0.34 -1.90 16 4 C 0.07 1.18 4.33 -3.83 -0.02 1.17 16 5 N -0.54 -9.87 3.84 -239.98 -0.92 -10.79 16 6 C 0.20 4.36 4.79 -4.98 -0.02 4.33 16 7 C -0.51 -12.47 7.24 -34.44 -0.25 -12.72 16 8 H 0.08 1.95 4.58 -52.49 -0.24 1.71 16 9 C 0.06 1.48 5.46 -17.82 -0.10 1.38 16 10 N -0.90 -24.41 13.29 55.43 0.74 -23.67 16 11 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 12 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.28 4.10 6.15 -63.31 -0.39 3.71 16 16 N -0.34 -4.90 3.47 -64.05 -0.22 -5.12 16 17 C 0.13 1.68 11.30 -16.82 -0.19 1.49 16 18 C -0.11 -1.57 7.02 -83.57 -0.59 -2.15 16 19 C 0.58 7.57 8.33 34.45 0.29 7.86 16 20 O -0.52 -7.49 17.65 -19.28 -0.34 -7.83 16 21 O -0.50 -5.21 13.43 -40.64 -0.55 -5.76 16 22 N -0.19 -3.05 12.39 32.83 0.41 -2.65 16 23 N -0.06 -0.97 12.09 60.35 0.73 -0.24 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.39 6.74 -51.93 -0.35 1.04 16 27 H 0.11 2.37 5.14 -51.93 -0.27 2.10 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.13 5.87 -51.93 -0.31 0.83 16 32 H 0.03 0.55 7.74 -51.93 -0.40 0.15 16 33 H 0.00 0.08 7.67 -51.93 -0.40 -0.32 16 34 H 0.03 0.74 7.65 -51.93 -0.40 0.34 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 37 H 0.12 1.46 7.79 -51.93 -0.40 1.06 16 38 H 0.21 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.41 2.03 9.11 45.56 0.42 2.44 16 LS Contribution 329.13 15.07 4.96 4.96 Total: -1.00 -29.70 329.13 -5.49 -35.19 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -4.44 Total: 1.62 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: -0.83 Total: -0.92 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.73 Total: -42.48 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.89 Total: -13.59 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.70 -5.49 -35.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591322287.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.185 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds