Wall clock time and date at job start Tue Mar 31 2020 05:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 N 1.46498 * 109.46855 * 120.00111 * 2 1 3 5 5 C 1.35310 * 125.86735 * 275.28987 * 4 2 1 6 6 C 1.35352 * 106.17648 * 180.18854 * 5 4 2 7 7 C 1.50695 * 126.75518 * 179.85466 * 6 5 4 8 8 N 1.46499 * 109.47007 * 94.71115 * 7 6 5 9 9 C 1.36942 * 120.00150 * 93.38258 * 8 7 6 10 10 H 1.08003 * 119.99779 * 215.15624 * 9 8 7 11 11 C 1.38809 * 120.00044 * 35.42189 * 9 8 7 12 12 N 1.31622 * 119.99872 * 21.26863 * 11 9 8 13 13 Si 1.86796 * 120.00362 * 201.26175 * 11 9 8 14 14 H 1.48499 * 109.46920 * 90.00097 * 13 11 9 15 15 H 1.48496 * 109.47229 * 210.00283 * 13 11 9 16 16 H 1.48503 * 109.47025 * 330.00563 * 13 11 9 17 17 C 1.46505 * 120.00243 * 273.37848 * 8 7 6 18 18 C 1.53005 * 109.47042 * 269.99976 * 17 8 7 19 19 C 1.50696 * 109.47077 * 179.97438 * 18 17 8 20 20 O 1.20829 * 119.99649 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00231 * 179.97438 * 19 18 17 22 22 N 1.33777 * 106.49233 * 359.59439 * 6 5 4 23 23 N 1.28632 * 108.88605 * 0.25984 * 22 6 5 24 24 H 1.08992 * 109.47243 * 300.00389 * 1 2 3 25 25 H 1.09008 * 109.46853 * 59.99982 * 1 2 3 26 26 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47257 * 239.99920 * 2 1 3 28 28 H 1.08998 * 109.47339 * 60.00125 * 3 2 1 29 29 H 1.09002 * 109.47256 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47504 * 299.99831 * 3 2 1 31 31 H 1.08006 * 126.91744 * 0.04601 * 5 4 2 32 32 H 1.09000 * 109.47429 * 334.71604 * 7 6 5 33 33 H 1.08998 * 109.47469 * 214.70860 * 7 6 5 34 34 H 0.96998 * 120.00134 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.46840 * 29.99922 * 17 8 7 36 36 H 1.08996 * 109.47050 * 150.00050 * 17 8 7 37 37 H 1.08996 * 109.47178 * 300.00231 * 18 17 8 38 38 H 1.09004 * 109.46877 * 59.99914 * 18 17 8 39 39 H 0.96701 * 117.00334 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1357 2.4186 6 6 2.6556 -1.1217 3.2189 7 6 3.0063 -1.0070 4.6800 8 7 1.8584 -1.4196 5.4915 9 6 1.7543 -2.7155 5.9215 10 1 0.7839 -3.1842 5.9938 11 6 2.8954 -3.4250 6.2699 12 7 3.9970 -2.7817 6.5938 13 14 2.8675 -5.2927 6.2793 14 1 3.2617 -5.8004 4.9406 15 1 3.8207 -5.7969 7.3003 16 1 1.4979 -5.7657 6.6044 17 6 0.8219 -0.4457 5.8430 18 6 1.1870 0.2330 7.1648 19 6 0.1211 1.2352 7.5260 20 8 -0.8328 1.3903 6.8009 21 8 0.2310 1.9547 8.6538 22 7 2.7405 -2.2194 2.4590 23 7 2.3558 -1.9308 1.2660 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.9903 0.8886 2.6989 32 1 3.2625 0.0266 4.9122 33 1 3.8575 -1.6509 4.9010 34 1 4.7943 -3.2774 6.8376 35 1 0.7480 0.3058 5.0569 36 1 -0.1353 -0.9561 5.9489 37 1 1.2610 -0.5185 7.9508 38 1 2.1443 0.7434 7.0588 39 1 -0.4776 2.5848 8.8434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592126973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:07 Heat of formation + Delta-G solvation = 20.764045 kcal Electronic energy + Delta-G solvation = -22557.809611 eV Core-core repulsion = 19117.502455 eV Total energy + Delta-G solvation = -3440.307156 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53744 -39.80795 -36.51354 -36.01450 -35.54116 -31.99780 -31.55180 -30.66474 -29.32732 -27.58868 -25.97435 -24.74806 -23.40565 -21.96909 -20.69845 -20.30678 -19.57484 -17.74531 -17.10651 -16.51186 -16.03736 -15.69174 -15.56216 -14.75707 -14.62133 -14.19844 -13.68116 -13.64068 -13.28185 -13.13005 -12.72470 -12.58177 -12.43306 -12.36624 -11.69347 -11.64118 -11.35123 -11.22733 -11.13475 -11.04135 -10.71567 -10.52515 -10.28204 -10.21959 -10.13311 -9.89373 -9.72626 -9.36252 -8.49583 -8.39545 -6.73137 -5.82257 -3.36446 2.23637 2.62796 2.78657 3.35768 3.45743 3.52959 3.54875 3.60501 4.35726 4.55847 4.63928 4.80724 5.03451 5.23007 5.35725 5.41100 5.43059 5.50239 5.52663 5.65622 5.73697 5.79228 5.82552 5.92523 6.03387 6.15132 6.26609 6.36346 6.66987 6.76581 6.83885 6.94611 7.07713 7.21680 7.61733 7.83978 8.26551 8.48327 9.13930 9.32655 9.77264 10.30309 11.20833 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.007033 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.765689 B = 3980.097673 C = 6151.447061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 C -0.163 4.163 4 N -0.297 5.297 5 C -0.071 4.071 6 C 0.000 4.000 7 C 0.213 3.787 8 N -0.567 5.567 9 C -0.260 4.260 10 H 0.062 0.938 11 C 0.023 3.977 12 N -0.887 5.887 13 Si 0.900 3.100 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.163 3.837 18 C -0.131 4.131 19 C 0.479 3.521 20 O -0.529 6.529 21 O -0.524 6.524 22 N -0.250 5.250 23 N -0.111 5.111 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.044 0.956 33 H 0.119 0.881 34 H 0.257 0.743 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 12.014 -7.478 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.038 3.962 3 C -0.221 4.221 4 N -0.093 5.093 5 C -0.222 4.222 6 C -0.141 4.141 7 C 0.085 3.915 8 N -0.285 5.285 9 C -0.390 4.390 10 H 0.079 0.921 11 C -0.178 4.178 12 N -0.529 5.529 13 Si 0.729 3.271 14 H -0.207 1.207 15 H -0.219 1.219 16 H -0.204 1.204 17 C 0.035 3.965 18 C -0.172 4.172 19 C 0.322 3.678 20 O -0.419 6.419 21 O -0.335 6.335 22 N -0.117 5.117 23 N -0.089 5.089 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.192 0.808 32 H 0.062 0.938 33 H 0.136 0.864 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.938 10.351 -8.486 13.952 hybrid contribution -0.700 0.647 0.592 1.123 sum -4.639 10.998 -7.894 14.310 Atomic orbital electron populations 1.22207 0.93015 1.03677 1.03320 1.21479 0.95512 0.93440 0.85720 1.22172 1.02413 0.93747 1.03753 1.47440 1.43870 1.08604 1.09427 1.23253 1.11211 1.02017 0.85706 1.23794 1.01636 0.88357 1.00304 1.19450 0.93895 0.98956 0.79195 1.43784 1.23570 1.06531 1.54658 1.19014 0.93297 0.87183 1.39466 0.92051 1.25050 0.96923 0.98473 0.97356 1.69912 1.02596 1.34720 1.45633 0.86351 0.77371 0.85719 0.77663 1.20710 1.21865 1.20432 1.20752 0.93200 0.91645 0.90888 1.22420 0.95565 0.95337 1.03855 1.24434 0.87083 0.79361 0.76903 1.90652 1.33711 1.66240 1.51258 1.84665 1.52813 1.52538 1.43508 1.75126 1.15800 1.24765 0.95964 1.78229 1.17246 0.95978 1.17451 0.91461 0.90332 0.91394 0.87571 0.91169 0.91360 0.90018 0.80804 0.93796 0.86413 0.93321 0.93917 0.92885 0.87275 0.88456 0.74542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.52 37.16 0.35 -1.26 16 2 C 0.14 1.55 3.85 -67.93 -0.26 1.29 16 3 C -0.16 -1.33 8.84 37.16 0.33 -1.00 16 4 N -0.30 -4.90 3.25 -54.76 -0.18 -5.07 16 5 C -0.07 -1.23 10.62 -17.05 -0.18 -1.42 16 6 C 0.00 -0.01 6.83 -82.78 -0.57 -0.57 16 7 C 0.21 4.86 5.82 -5.20 -0.03 4.82 16 8 N -0.57 -13.48 2.43 -174.61 -0.42 -13.90 16 9 C -0.26 -6.98 9.48 -15.06 -0.14 -7.12 16 10 H 0.06 1.69 7.92 -52.48 -0.42 1.27 16 11 C 0.02 0.62 4.95 -17.43 -0.09 0.53 16 12 N -0.89 -24.48 11.35 55.49 0.63 -23.85 16 13 Si 0.90 22.17 29.61 -169.99 -5.03 17.14 16 14 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 C 0.16 3.32 4.97 -4.04 -0.02 3.30 16 18 C -0.13 -2.36 6.14 -27.88 -0.17 -2.53 16 19 C 0.48 7.83 8.33 36.00 0.30 8.13 16 20 O -0.53 -9.84 16.74 -18.75 -0.31 -10.16 16 21 O -0.52 -6.96 13.42 -39.26 -0.53 -7.49 16 22 N -0.25 -5.95 12.41 33.29 0.41 -5.53 16 23 N -0.11 -2.29 13.16 60.35 0.79 -1.50 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.17 2.40 7.31 -52.48 -0.38 2.01 16 32 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 33 H 0.12 3.10 5.39 -51.93 -0.28 2.82 16 34 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.04 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.05 1.14 8.00 -51.93 -0.42 0.73 16 37 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 38 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.40 3.35 9.10 45.56 0.41 3.77 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -33.32 337.49 -4.83 -38.16 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.81 Total: 2.94 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.48 Total: 4.17 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 1.24 Total: -49.86 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.84 Total: -17.64 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.32 -4.83 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592126973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.922 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds