Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 N 1.46498 * 109.46855 * 120.00111 * 2 1 3 5 5 C 1.35310 * 125.86735 * 275.28987 * 4 2 1 6 6 C 1.35352 * 106.17648 * 180.18854 * 5 4 2 7 7 C 1.50695 * 126.75518 * 179.85466 * 6 5 4 8 8 N 1.46499 * 109.47007 * 94.71115 * 7 6 5 9 9 C 1.36942 * 120.00150 * 93.38258 * 8 7 6 10 10 H 1.08003 * 119.99779 * 215.15624 * 9 8 7 11 11 C 1.38809 * 120.00044 * 35.42189 * 9 8 7 12 12 N 1.31622 * 119.99872 * 21.26863 * 11 9 8 13 13 Si 1.86796 * 120.00362 * 201.26175 * 11 9 8 14 14 H 1.48499 * 109.46920 * 90.00097 * 13 11 9 15 15 H 1.48496 * 109.47229 * 210.00283 * 13 11 9 16 16 H 1.48503 * 109.47025 * 330.00563 * 13 11 9 17 17 C 1.46505 * 120.00243 * 273.37848 * 8 7 6 18 18 C 1.53005 * 109.47042 * 269.99976 * 17 8 7 19 19 C 1.50696 * 109.47077 * 179.97438 * 18 17 8 20 20 O 1.20829 * 119.99649 * 0.02562 * 19 18 17 21 21 O 1.34230 * 120.00231 * 179.97438 * 19 18 17 22 22 N 1.33777 * 106.49233 * 359.59439 * 6 5 4 23 23 N 1.28632 * 108.88605 * 0.25984 * 22 6 5 24 24 H 1.08992 * 109.47243 * 300.00389 * 1 2 3 25 25 H 1.09008 * 109.46853 * 59.99982 * 1 2 3 26 26 H 1.09001 * 109.47314 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47257 * 239.99920 * 2 1 3 28 28 H 1.08998 * 109.47339 * 60.00125 * 3 2 1 29 29 H 1.09002 * 109.47256 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47504 * 299.99831 * 3 2 1 31 31 H 1.08006 * 126.91744 * 0.04601 * 5 4 2 32 32 H 1.09000 * 109.47429 * 334.71604 * 7 6 5 33 33 H 1.08998 * 109.47469 * 214.70860 * 7 6 5 34 34 H 0.96998 * 120.00134 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.46840 * 29.99922 * 17 8 7 36 36 H 1.08996 * 109.47050 * 150.00050 * 17 8 7 37 37 H 1.08996 * 109.47178 * 300.00231 * 18 17 8 38 38 H 1.09004 * 109.46877 * 59.99914 * 18 17 8 39 39 H 0.96701 * 117.00334 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1872 -0.1357 2.4186 6 6 2.6556 -1.1217 3.2189 7 6 3.0063 -1.0070 4.6800 8 7 1.8584 -1.4196 5.4915 9 6 1.7543 -2.7155 5.9215 10 1 0.7839 -3.1842 5.9938 11 6 2.8954 -3.4250 6.2699 12 7 3.9970 -2.7817 6.5938 13 14 2.8675 -5.2927 6.2793 14 1 3.2617 -5.8004 4.9406 15 1 3.8207 -5.7969 7.3003 16 1 1.4979 -5.7657 6.6044 17 6 0.8219 -0.4457 5.8430 18 6 1.1870 0.2330 7.1648 19 6 0.1211 1.2352 7.5260 20 8 -0.8328 1.3903 6.8009 21 8 0.2310 1.9547 8.6538 22 7 2.7405 -2.2194 2.4590 23 7 2.3558 -1.9308 1.2660 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.9903 0.8886 2.6989 32 1 3.2625 0.0266 4.9122 33 1 3.8575 -1.6509 4.9010 34 1 4.7943 -3.2774 6.8376 35 1 0.7480 0.3058 5.0569 36 1 -0.1353 -0.9561 5.9489 37 1 1.2610 -0.5185 7.9508 38 1 2.1443 0.7434 7.0588 39 1 -0.4776 2.5848 8.8434 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592126973.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -2.425167 kcal Electronic energy + Delta-G solvation = -22558.815171 eV Core-core repulsion = 19117.502455 eV Total energy + Delta-G solvation = -3441.312716 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.00015 -41.10652 -38.00766 -37.20042 -36.90127 -33.86075 -33.06708 -32.00278 -30.98877 -28.35553 -27.66658 -26.45645 -24.62805 -23.59448 -22.17410 -21.59420 -21.03305 -19.07761 -18.75126 -17.87643 -17.40966 -17.03016 -16.94903 -16.64217 -15.76589 -15.57111 -15.31864 -15.12559 -14.84877 -14.14358 -14.02013 -13.91421 -13.53022 -13.19942 -13.15969 -13.09377 -12.82180 -12.56747 -12.46305 -12.44505 -12.30072 -12.15740 -12.09417 -12.02974 -11.66528 -11.49338 -11.36654 -10.79447 -10.50249 -9.93937 -8.66200 -7.85238 -5.40980 0.83578 1.32252 1.44440 1.53128 1.55451 1.64098 1.78420 2.29992 2.55810 3.29928 3.50497 3.75473 3.84913 3.87297 4.02868 4.18916 4.28993 4.31847 4.40893 4.56836 4.63823 4.70712 4.77611 4.78651 4.83539 4.88361 5.09975 5.11182 5.17937 5.28317 5.30033 5.46568 5.70021 5.70901 5.77504 5.94647 6.48270 7.12049 7.17512 7.78502 7.85307 8.32737 9.13781 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010191 B = 0.007033 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.765689 B = 3980.097673 C = 6151.447061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.126 3.874 3 C -0.156 4.156 4 N -0.281 5.281 5 C -0.044 4.044 6 C -0.032 4.032 7 C 0.220 3.780 8 N -0.579 5.579 9 C -0.263 4.263 10 H 0.046 0.954 11 C -0.014 4.014 12 N -0.903 5.903 13 Si 0.941 3.059 14 H -0.298 1.298 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.167 3.833 18 C -0.122 4.122 19 C 0.495 3.505 20 O -0.552 6.552 21 O -0.514 6.514 22 N -0.308 5.308 23 N -0.134 5.134 24 H 0.062 0.938 25 H 0.117 0.883 26 H 0.044 0.956 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.115 0.885 31 H 0.216 0.784 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.253 0.747 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 14.830 -8.321 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.026 3.974 3 C -0.214 4.214 4 N -0.077 5.077 5 C -0.196 4.196 6 C -0.174 4.174 7 C 0.092 3.908 8 N -0.299 5.299 9 C -0.394 4.394 10 H 0.063 0.937 11 C -0.213 4.213 12 N -0.546 5.546 13 Si 0.771 3.229 14 H -0.225 1.225 15 H -0.212 1.212 16 H -0.199 1.199 17 C 0.041 3.959 18 C -0.162 4.162 19 C 0.339 3.661 20 O -0.443 6.443 21 O -0.328 6.328 22 N -0.173 5.173 23 N -0.112 5.112 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.232 0.768 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -4.982 13.189 -9.336 16.910 hybrid contribution -0.471 -0.081 0.763 0.900 sum -5.453 13.108 -8.573 16.584 Atomic orbital electron populations 1.22209 0.91755 1.02693 1.05015 1.22108 0.96483 0.94935 0.83840 1.22201 1.02034 0.91472 1.05729 1.47939 1.41450 1.07527 1.10755 1.23620 1.08336 1.02632 0.85039 1.23661 1.04045 0.89399 1.00258 1.19218 0.92314 0.99217 0.80081 1.43850 1.24315 1.06271 1.55429 1.19032 0.92609 0.88966 1.38754 0.93650 1.25471 0.97015 1.00763 0.98062 1.69988 1.02673 1.35209 1.46713 0.85692 0.77515 0.83083 0.76648 1.22531 1.21184 1.19867 1.20670 0.91343 0.91262 0.92670 1.22041 0.96690 0.95589 1.01929 1.23747 0.85924 0.79097 0.77327 1.90658 1.34332 1.67053 1.52268 1.84571 1.53926 1.52662 1.41612 1.75047 1.18029 1.26871 0.97400 1.78101 1.18486 0.98090 1.16535 0.91878 0.86490 0.93711 0.86670 0.90627 0.91959 0.86626 0.76750 0.91316 0.90219 0.93720 0.92245 0.94632 0.88928 0.87508 0.71536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.52 71.98 0.69 -1.96 16 2 C 0.13 2.42 3.85 44.99 0.17 2.59 16 3 C -0.16 -1.90 8.84 71.98 0.64 -1.26 16 4 N -0.28 -8.82 3.25 -327.16 -1.06 -9.88 16 5 C -0.04 -1.44 10.62 83.49 0.89 -0.56 16 6 C -0.03 -1.38 6.83 41.59 0.28 -1.10 16 7 C 0.22 10.07 5.82 85.63 0.50 10.57 16 8 N -0.58 -27.81 2.43 -706.34 -1.71 -29.53 16 9 C -0.26 -14.49 9.48 84.03 0.80 -13.69 16 10 H 0.05 2.59 7.92 -2.91 -0.02 2.57 16 11 C -0.01 -0.80 4.95 84.86 0.42 -0.38 16 12 N -0.90 -51.10 11.35 21.65 0.25 -50.85 16 13 Si 0.94 46.80 29.61 68.60 2.03 48.83 16 14 H -0.30 -15.52 7.11 99.48 0.71 -14.81 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 16 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 17 C 0.17 6.71 4.97 86.38 0.43 7.14 16 18 C -0.12 -4.25 6.14 29.85 0.18 -4.07 16 19 C 0.50 15.06 8.33 71.23 0.59 15.65 16 20 O -0.55 -19.30 16.74 21.95 0.37 -18.93 16 21 O -0.51 -12.04 13.42 -51.42 -0.69 -12.73 16 22 N -0.31 -15.04 12.41 -48.60 -0.60 -15.64 16 23 N -0.13 -5.59 13.16 37.02 0.49 -5.10 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.07 0.87 7.18 -2.39 -0.02 0.86 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.22 5.03 7.31 -2.91 -0.02 5.01 16 32 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 33 H 0.08 4.33 5.39 -2.39 -0.01 4.32 16 34 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 35 H 0.06 2.16 8.03 -2.39 -0.02 2.15 16 36 H 0.04 1.53 8.00 -2.39 -0.02 1.51 16 37 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 39 H 0.42 5.56 9.10 -74.06 -0.67 4.89 16 Total: -1.00 -75.41 337.49 5.04 -70.37 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: 0.39 Total: 10.53 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 5.59 Total: 12.93 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -2.65 Total: -111.00 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.32 Total: -31.66 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Total: -75.41 5.04 -70.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592126973.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.945 kcal (2) G-P(sol) polarization free energy of solvation -75.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds