Wall clock time and date at job start Tue Mar 31 2020 05:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46932 * 2 1 4 4 C 1.53006 * 109.46932 * 179.97438 * 3 2 1 5 5 C 1.53008 * 109.47185 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46792 * 54.99601 * 5 4 3 7 7 C 1.50702 * 109.46908 * 294.99837 * 5 4 3 8 8 O 1.20822 * 119.99854 * 239.72390 * 7 5 4 9 9 O 1.34234 * 119.99997 * 60.00225 * 7 5 4 10 10 N 1.46498 * 109.46971 * 174.99877 * 5 4 3 11 11 C 1.35310 * 125.86687 * 85.00096 * 10 5 4 12 12 C 1.35349 * 106.17493 * 179.97438 * 11 10 5 13 13 C 1.50703 * 126.75133 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46941 * 95.00268 * 13 12 11 15 15 C 1.36935 * 120.00050 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00336 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99875 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00222 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99844 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47106 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46864 * 120.00144 * 19 17 15 22 22 H 1.48496 * 109.47311 * 240.00158 * 19 17 15 23 23 N 1.33770 * 106.49881 * 359.97438 * 12 11 10 24 24 N 1.28636 * 108.88134 * 359.73992 * 23 12 11 25 25 H 1.09000 * 109.46926 * 300.00497 * 1 2 3 26 26 H 1.09003 * 109.47013 * 60.00046 * 1 2 3 27 27 H 1.08993 * 109.47313 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47052 * 239.99799 * 2 1 3 29 29 H 1.08997 * 109.46559 * 119.99426 * 2 1 3 30 30 H 1.09000 * 109.47721 * 59.99990 * 3 2 1 31 31 H 1.09003 * 109.47233 * 299.99819 * 3 2 1 32 32 H 1.08997 * 109.47082 * 60.00261 * 4 3 2 33 33 H 1.09002 * 109.46998 * 299.99397 * 4 3 2 34 34 H 0.96695 * 116.99910 * 179.72143 * 9 7 5 35 35 H 1.08004 * 126.91319 * 359.97438 * 11 10 5 36 36 H 1.08999 * 109.47248 * 214.99749 * 13 12 11 37 37 H 1.08999 * 109.47352 * 335.00561 * 13 12 11 38 38 H 0.97004 * 120.00074 * 0.02562 * 14 13 12 39 39 H 0.97002 * 120.00405 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6450 3.4245 0.8413 7 6 3.6820 3.5580 -1.2883 8 8 4.5305 3.9987 -2.0269 9 8 2.3844 3.6726 -1.6126 10 7 5.5401 2.8868 0.1210 11 6 6.4203 2.7598 -0.8988 12 6 7.6528 2.8152 -0.3422 13 6 8.9728 2.7192 -1.0629 14 7 9.4700 4.0665 -1.3526 15 6 10.6621 4.2305 -2.0062 16 1 11.2356 3.3668 -2.3084 17 6 11.1329 5.5071 -2.2811 18 7 10.4338 6.5598 -1.9133 19 14 12.7587 5.7308 -3.1733 20 1 13.3444 4.4002 -3.4761 21 1 12.5302 6.4705 -4.4406 22 1 13.6937 6.4996 -2.3132 23 7 7.4687 2.9717 0.9735 24 7 6.2060 3.0163 1.2148 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9288 0.8909 34 1 2.1779 4.1156 -2.4469 35 1 6.1864 2.6387 -1.9462 36 1 9.6923 2.1937 -0.4350 37 1 8.8382 2.1731 -1.9965 38 1 8.9551 4.8424 -1.0808 39 1 10.7630 7.4519 -2.1051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595629384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:25 Heat of formation + Delta-G solvation = 16.774174 kcal Electronic energy + Delta-G solvation = -21959.005702 eV Core-core repulsion = 18518.525532 eV Total energy + Delta-G solvation = -3440.480170 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.09964 -40.79722 -36.95996 -36.77093 -35.01766 -34.18509 -31.89218 -31.20275 -29.83898 -27.74166 -25.79574 -24.04962 -23.11639 -22.77840 -21.50500 -21.11515 -20.47870 -18.47761 -17.56776 -17.31334 -16.88311 -16.30616 -15.64405 -15.56683 -14.67841 -14.57429 -14.19117 -14.06271 -13.73673 -13.59713 -13.11096 -13.06469 -12.62334 -12.53316 -12.07714 -11.88929 -11.72170 -11.59243 -11.35210 -11.28308 -10.91063 -10.89286 -10.83553 -10.77549 -10.44349 -10.02120 -9.89528 -9.67467 -8.82211 -8.75126 -6.84167 -5.66903 -2.96375 1.59373 1.65351 2.02102 2.60492 2.95361 3.49978 3.54858 3.57705 3.97261 4.19631 4.48068 4.50134 4.57462 4.68369 4.76794 4.81545 4.92254 5.17268 5.25858 5.35841 5.41926 5.43882 5.54524 5.57833 5.69754 5.74084 5.80837 5.85744 5.96958 5.98341 6.25496 6.45594 6.70107 6.73221 6.83346 7.32325 7.77602 8.50090 8.83193 9.61760 10.18513 10.54523 11.56009 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032431 B = 0.003306 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.165737 B = 8468.144153 C = 8846.108508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.127 4.127 4 C -0.125 4.125 5 C 0.163 3.837 6 H 0.148 0.852 7 C 0.471 3.529 8 O -0.479 6.479 9 O -0.501 6.501 10 N -0.303 5.303 11 C -0.010 4.010 12 C -0.013 4.013 13 C 0.234 3.766 14 N -0.726 5.726 15 C -0.237 4.237 16 H 0.074 0.926 17 C -0.015 4.015 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 N -0.243 5.243 24 N -0.096 5.096 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.417 0.583 35 H 0.191 0.809 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.386 0.614 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.253 -12.492 1.991 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.165 4.165 4 C -0.163 4.163 5 C 0.058 3.942 6 H 0.166 0.834 7 C 0.310 3.690 8 O -0.364 6.364 9 O -0.314 6.314 10 N -0.097 5.097 11 C -0.160 4.160 12 C -0.149 4.149 13 C 0.105 3.895 14 N -0.370 5.370 15 C -0.368 4.368 16 H 0.092 0.908 17 C -0.211 4.211 18 N -0.580 5.580 19 Si 0.740 3.260 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.219 1.219 23 N -0.111 5.111 24 N -0.074 5.074 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.278 0.722 35 H 0.208 0.792 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.219 0.781 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.848 -12.410 3.579 27.121 hybrid contribution 0.499 0.848 -2.125 2.341 sum -23.349 -11.562 1.454 26.095 Atomic orbital electron populations 1.21759 0.95548 1.01669 1.01981 1.21493 0.96132 0.96205 1.02269 1.21807 0.92369 0.97938 1.04381 1.22020 0.97710 0.91416 1.05194 1.20824 0.77062 1.00022 0.96271 0.83440 1.22868 0.81121 0.77350 0.87681 1.90921 1.51045 1.43581 1.50813 1.84496 1.26590 1.74052 1.46231 1.46833 1.06323 1.49726 1.06849 1.23506 0.88970 1.07436 0.96106 1.22457 0.96763 1.05364 0.90350 1.18932 0.85958 0.90114 0.94474 1.42324 1.24043 1.00951 1.69729 1.19278 0.96621 0.92253 1.28675 0.90831 1.24768 0.98979 0.95448 1.01886 1.69702 1.38867 0.97310 1.52144 0.86082 0.83429 0.77520 0.78953 1.20474 1.21967 1.21891 1.75056 1.05568 1.14900 1.15584 1.78304 0.99510 1.20778 1.08812 0.92631 0.92602 0.92765 0.91917 0.91870 0.91066 0.89180 0.90182 0.88805 0.72203 0.79229 0.94290 0.94524 0.78063 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.64 5.93 -26.73 -0.16 -0.80 16 3 C -0.13 -0.68 4.86 -26.73 -0.13 -0.81 16 4 C -0.12 -0.90 5.00 -26.72 -0.13 -1.03 16 5 C 0.16 1.60 3.26 -69.08 -0.23 1.38 16 6 H 0.15 1.18 8.14 -51.93 -0.42 0.76 16 7 C 0.47 4.68 7.54 36.01 0.27 4.95 16 8 O -0.48 -6.95 14.48 -18.75 -0.27 -7.22 16 9 O -0.50 -2.85 10.57 -39.27 -0.41 -3.27 16 10 N -0.30 -4.57 3.21 -55.89 -0.18 -4.75 16 11 C -0.01 -0.18 9.70 -17.05 -0.17 -0.34 16 12 C -0.01 -0.26 6.61 -82.78 -0.55 -0.80 16 13 C 0.23 5.23 6.82 -5.19 -0.04 5.19 16 14 N -0.73 -20.02 5.59 -61.09 -0.34 -20.36 16 15 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 16 H 0.07 2.05 7.83 -52.49 -0.41 1.64 16 17 C -0.01 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -29.75 13.06 55.49 0.72 -29.03 16 19 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 23 N -0.24 -5.14 12.41 33.29 0.41 -4.73 16 24 N -0.10 -1.74 13.16 60.35 0.79 -0.94 16 25 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.47 5.46 -51.93 -0.28 0.19 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.42 0.90 9.10 45.56 0.41 1.31 16 35 H 0.19 2.99 6.79 -52.48 -0.36 2.64 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.39 11.55 7.66 -40.82 -0.31 11.24 16 39 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -37.27 333.20 -5.01 -42.28 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.73 Total: 5.12 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.00 Total: -0.27 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 1.41 Total: -59.81 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.69 Total: -10.49 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.27 -5.01 -42.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595629384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.057 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds