Wall clock time and date at job start Tue Mar 31 2020 05:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47380 * 2 1 4 4 N 1.30834 * 125.95945 * 265.00403 * 3 2 1 5 5 C 1.33240 * 109.82682 * 179.97438 * 4 3 2 6 6 C 1.50701 * 125.52614 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47196 * 344.99653 * 6 5 4 8 8 C 1.52996 * 109.46868 * 105.00093 * 6 5 4 9 9 N 1.46506 * 109.47146 * 224.99827 * 6 5 4 10 10 C 1.36935 * 119.99889 * 300.00294 * 9 6 5 11 11 H 1.08001 * 120.00034 * 326.53705 * 10 9 6 12 12 C 1.38815 * 119.99993 * 146.53877 * 10 9 6 13 13 N 1.31617 * 119.99998 * 337.34904 * 12 10 9 14 14 Si 1.86799 * 119.99692 * 157.34770 * 12 10 9 15 15 H 1.48493 * 109.47658 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47241 * 120.00416 * 14 12 10 17 17 H 1.48505 * 109.47041 * 239.99918 * 14 12 10 18 18 C 1.46493 * 120.00015 * 119.99700 * 9 6 5 19 19 C 1.53004 * 109.46741 * 84.51602 * 18 9 6 20 20 C 1.50707 * 109.46944 * 179.97438 * 19 18 9 21 21 O 1.20827 * 119.99836 * 0.02562 * 20 19 18 22 22 O 1.34231 * 119.99673 * 179.97438 * 20 19 18 23 23 N 1.30715 * 108.94720 * 359.97438 * 5 4 3 24 24 N 1.34428 * 125.95886 * 84.97618 * 3 2 1 25 25 H 0.96995 * 126.82701 * 0.02562 * 24 3 2 26 26 H 1.09001 * 109.47037 * 300.00026 * 1 2 3 27 27 H 1.08997 * 109.46857 * 60.00048 * 1 2 3 28 28 H 1.08999 * 109.47038 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47037 * 239.99974 * 2 1 3 30 30 H 1.08999 * 109.47356 * 120.00058 * 2 1 3 31 31 H 1.09000 * 109.47572 * 59.99789 * 8 6 5 32 32 H 1.09005 * 109.46858 * 180.02562 * 8 6 5 33 33 H 1.09000 * 109.46995 * 299.99663 * 8 6 5 34 34 H 0.96997 * 119.99677 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.47654 * 204.51950 * 18 9 6 36 36 H 1.09000 * 109.47137 * 324.51984 * 18 9 6 37 37 H 1.08997 * 109.47538 * 299.99792 * 19 18 9 38 38 H 1.09000 * 109.46993 * 60.00294 * 19 18 9 39 39 H 0.96699 * 116.99480 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3755 2.1144 -1.0550 5 6 2.7713 3.3320 -0.6862 6 6 3.2414 4.4195 -1.6176 7 1 3.4634 3.9903 -2.5946 8 6 2.1447 5.4765 -1.7621 9 7 4.4502 5.0415 -1.0714 10 6 4.4129 5.6495 0.1551 11 1 3.5147 6.1528 0.4812 12 6 5.5296 5.6189 0.9791 13 7 6.4370 4.6784 0.8231 14 14 5.7444 6.9127 2.3093 15 1 4.5942 7.8513 2.2773 16 1 5.8076 6.2515 3.6374 17 1 7.0027 7.6643 2.0702 18 6 5.6987 5.0130 -1.8372 19 6 5.7138 6.1759 -2.8313 20 6 6.9985 6.1470 -3.6187 21 8 7.8176 5.2844 -3.4068 22 8 7.2322 7.0789 -4.5562 23 7 2.6846 3.4308 0.6143 24 7 2.2057 2.1968 1.0839 25 1 2.0339 1.9531 2.0069 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.9226 5.9057 -0.7851 32 1 2.4846 6.2628 -2.4362 33 1 1.2454 5.0137 -2.1686 34 1 7.2171 4.6569 1.3992 35 1 6.5448 5.1059 -1.1564 36 1 5.7707 4.0703 -2.3796 37 1 4.8678 6.0830 -3.5122 38 1 5.6417 7.1186 -2.2889 39 1 8.0702 7.0194 -5.0349 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597644325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:17 Heat of formation + Delta-G solvation = 4.865033 kcal Electronic energy + Delta-G solvation = -22725.174310 eV Core-core repulsion = 19284.177721 eV Total energy + Delta-G solvation = -3440.996589 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32477 -39.65882 -36.56849 -35.59246 -33.96574 -32.46369 -31.48914 -31.10043 -29.00973 -28.26099 -24.96682 -24.07440 -23.62241 -21.96765 -20.29694 -19.90136 -19.10990 -17.66187 -17.25768 -16.29104 -15.71508 -15.51770 -15.10115 -14.75301 -14.47586 -14.10559 -13.79045 -13.56793 -13.04081 -12.78796 -12.45300 -12.34374 -11.98658 -11.80948 -11.42303 -11.39894 -11.13328 -11.03351 -10.97386 -10.81783 -10.80350 -10.58002 -10.06954 -10.01017 -9.89297 -9.64386 -9.26154 -9.19868 -8.60175 -8.44264 -6.70741 -5.77505 -3.29158 2.40476 2.78860 3.33812 3.40507 3.46686 3.48824 3.57428 3.76444 4.46179 4.52906 4.95966 5.17897 5.24651 5.31322 5.45743 5.59486 5.71192 5.74629 5.80211 5.94438 6.00526 6.09215 6.13685 6.19727 6.32992 6.48571 6.55783 6.65684 6.90644 6.98563 7.03892 7.15761 7.35670 7.72896 7.75232 7.91909 8.40001 8.50151 8.97074 9.18747 9.79396 10.33381 11.25195 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014373 B = 0.005900 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.662156 B = 4744.509554 C = 5899.413098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 C 0.255 3.745 4 N -0.545 5.545 5 C 0.224 3.776 6 C 0.249 3.751 7 H 0.074 0.926 8 C -0.148 4.148 9 N -0.566 5.566 10 C -0.239 4.239 11 H 0.071 0.929 12 C 0.014 3.986 13 N -0.880 5.880 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.292 1.292 17 H -0.290 1.290 18 C 0.156 3.844 19 C -0.131 4.131 20 C 0.477 3.523 21 O -0.516 6.516 22 O -0.529 6.529 23 N -0.251 5.251 24 N -0.499 5.499 25 H 0.428 0.572 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.033 0.967 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.032 -3.830 -4.681 10.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.024 4.024 4 N -0.275 5.275 5 C -0.061 4.061 6 C 0.139 3.861 7 H 0.092 0.908 8 C -0.208 4.208 9 N -0.284 5.284 10 C -0.369 4.369 11 H 0.088 0.912 12 C -0.186 4.186 13 N -0.522 5.522 14 Si 0.725 3.275 15 H -0.200 1.200 16 H -0.219 1.219 17 H -0.216 1.216 18 C 0.030 3.970 19 C -0.171 4.171 20 C 0.319 3.681 21 O -0.403 6.403 22 O -0.340 6.340 23 N -0.077 5.077 24 N -0.216 5.216 25 H 0.271 0.729 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -7.819 -3.512 -4.284 9.582 hybrid contribution 0.755 0.112 1.190 1.414 sum -7.064 -3.400 -3.094 8.428 Atomic orbital electron populations 1.21728 0.93910 1.02121 1.02616 1.20019 0.96265 0.87523 1.04309 1.24052 0.98321 0.95949 0.84053 1.70290 1.22188 1.05399 1.29596 1.25410 0.96234 0.93254 0.91187 1.18981 0.88360 0.86729 0.92053 0.90795 1.22111 0.97487 0.99005 1.02158 1.44093 1.05066 1.61375 1.17907 1.19016 0.99548 1.25920 0.92370 0.91160 1.25102 0.99373 0.97139 0.96988 1.70031 1.12385 1.30271 1.39530 0.86355 0.77684 0.81866 0.81644 1.19998 1.21939 1.21627 1.20864 0.92300 0.91471 0.92407 1.22363 0.90341 1.06314 0.98125 1.24195 0.89608 0.77380 0.76885 1.90698 1.47681 1.36659 1.65300 1.84627 1.44657 1.54388 1.50334 1.78509 1.18591 0.97951 1.12665 1.48363 1.51928 1.11784 1.09558 0.72894 0.92785 0.91814 0.91658 0.88571 0.90144 0.92061 0.92304 0.93937 0.93697 0.86993 0.94824 0.89415 0.87944 0.74524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.90 37.16 0.37 -0.99 16 2 C -0.04 -0.47 6.56 -27.88 -0.18 -0.65 16 3 C 0.26 4.35 7.49 -155.69 -1.17 3.18 16 4 N -0.54 -11.20 11.19 -8.16 -0.09 -11.29 16 5 C 0.22 5.02 6.93 -156.85 -1.09 3.93 16 6 C 0.25 5.32 3.30 -69.08 -0.23 5.09 16 7 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 8 C -0.15 -2.71 9.14 37.16 0.34 -2.37 16 9 N -0.57 -13.48 2.39 -166.98 -0.40 -13.88 16 10 C -0.24 -6.21 7.50 -15.06 -0.11 -6.32 16 11 H 0.07 1.87 6.83 -52.49 -0.36 1.51 16 12 C 0.01 0.39 4.91 -17.43 -0.09 0.31 16 13 N -0.88 -25.46 11.33 55.49 0.63 -24.83 16 14 Si 0.89 21.63 29.61 -169.99 -5.03 16.60 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.16 3.65 4.47 -4.04 -0.02 3.63 16 19 C -0.13 -2.46 6.13 -27.88 -0.17 -2.63 16 20 C 0.48 8.67 8.33 36.01 0.30 8.97 16 21 O -0.52 -11.12 16.74 -18.75 -0.31 -11.44 16 22 O -0.53 -7.53 13.42 -39.26 -0.53 -8.05 16 23 N -0.25 -5.76 11.35 32.42 0.37 -5.39 16 24 N -0.50 -8.98 7.45 32.62 0.24 -8.73 16 25 H 0.43 6.06 8.96 -182.34 -1.63 4.43 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 1.22 6.97 -51.93 -0.36 0.85 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.11 3.05 5.28 -51.93 -0.27 2.77 16 36 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 39 H 0.40 3.83 9.10 45.56 0.41 4.24 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -34.47 334.06 -8.11 -42.58 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.98 Total: 7.25 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -2.04 Total: 12.16 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.75 Total: -64.13 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.84 Total: -19.49 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.47 -8.11 -42.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597644325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.444 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds