Wall clock time and date at job start Tue Mar 31 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47468 * 2 1 4 4 N 1.30832 * 125.96596 * 265.30994 * 3 2 1 5 5 C 1.33238 * 109.83133 * 180.11873 * 4 3 2 6 6 C 1.50699 * 125.52713 * 179.85340 * 5 4 3 7 7 H 1.08992 * 109.47066 * 14.71621 * 6 5 4 8 8 C 1.53011 * 109.46987 * 254.71838 * 6 5 4 9 9 N 1.46501 * 109.47223 * 134.71993 * 6 5 4 10 10 C 1.36934 * 120.00027 * 60.00234 * 9 6 5 11 11 H 1.08003 * 120.00396 * 33.82942 * 10 9 6 12 12 C 1.38810 * 119.99825 * 213.83844 * 10 9 6 13 13 N 1.31628 * 120.00111 * 21.98160 * 12 10 9 14 14 Si 1.86802 * 120.00115 * 201.98265 * 12 10 9 15 15 H 1.48505 * 109.47032 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47381 * 119.99666 * 14 12 10 17 17 H 1.48500 * 109.47001 * 240.00083 * 14 12 10 18 18 C 1.46498 * 119.99889 * 239.99980 * 9 6 5 19 19 C 1.53006 * 109.47306 * 275.49560 * 18 9 6 20 20 C 1.50698 * 109.47152 * 180.02562 * 19 18 9 21 21 O 1.20819 * 120.00014 * 359.97438 * 20 19 18 22 22 O 1.34233 * 119.99744 * 179.97438 * 20 19 18 23 23 N 1.30711 * 108.94613 * 359.59311 * 5 4 3 24 24 N 1.34437 * 125.96031 * 84.97222 * 3 2 1 25 25 H 0.96999 * 126.81763 * 0.02562 * 24 3 2 26 26 H 1.08993 * 109.47600 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46972 * 300.00186 * 1 2 3 28 28 H 1.08998 * 109.47290 * 59.99248 * 1 2 3 29 29 H 1.09002 * 109.47024 * 240.00574 * 2 1 3 30 30 H 1.09002 * 109.47370 * 120.00247 * 2 1 3 31 31 H 1.09000 * 109.46427 * 180.02562 * 8 6 5 32 32 H 1.08992 * 109.47040 * 299.99798 * 8 6 5 33 33 H 1.08999 * 109.46636 * 60.00143 * 8 6 5 34 34 H 0.96999 * 119.99516 * 179.97438 * 13 12 10 35 35 H 1.08996 * 109.47039 * 155.49198 * 18 9 6 36 36 H 1.09004 * 109.47072 * 35.49091 * 18 9 6 37 37 H 1.09004 * 109.46487 * 300.00297 * 19 18 9 38 38 H 1.09002 * 109.47078 * 59.99508 * 19 18 9 39 39 H 0.96698 * 116.99751 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.3702 2.1163 -1.0554 5 6 2.7708 3.3322 -0.6861 6 6 3.2407 4.4198 -1.6175 7 1 2.9630 4.1670 -2.6406 8 6 4.7619 4.5529 -1.5199 9 7 2.6143 5.6896 -1.2409 10 6 2.8214 6.2113 0.0080 11 1 3.7709 6.0683 0.5025 12 6 1.8109 6.9239 0.6388 13 7 0.5575 6.7490 0.2768 14 14 2.2297 8.1312 2.0014 15 1 3.6988 8.1431 2.2179 16 1 1.7748 9.4910 1.6151 17 1 1.5485 7.7187 3.2548 18 6 1.7665 6.4010 -2.2007 19 6 2.6417 7.2603 -3.1155 20 6 1.7694 7.9926 -4.1023 21 8 0.5709 7.8424 -4.0769 22 8 2.3242 8.8118 -5.0095 23 7 2.6849 3.4307 0.6144 24 7 2.2057 2.1969 1.0840 25 1 2.0337 1.9531 2.0069 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 5.1016 5.3398 -2.1932 32 1 5.0395 4.8057 -0.4967 33 1 5.2278 3.6081 -1.8001 34 1 -0.1486 7.2467 0.7179 35 1 1.0661 7.0400 -1.6629 36 1 1.2125 5.6793 -2.8010 37 1 3.1957 7.9820 -2.5151 38 1 3.3421 6.6212 -3.6533 39 1 1.7242 9.2594 -5.6217 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597644326.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:21 Heat of formation + Delta-G solvation = 4.735679 kcal Electronic energy + Delta-G solvation = -22774.486934 eV Core-core repulsion = 19333.484736 eV Total energy + Delta-G solvation = -3441.002199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32286 -39.65967 -36.56635 -35.59243 -33.94135 -32.45497 -31.48825 -31.09704 -28.99506 -28.25991 -24.96824 -24.04396 -23.61852 -21.96729 -20.29577 -19.89532 -19.11175 -17.66050 -17.24457 -16.29482 -15.70277 -15.51743 -14.98942 -14.94035 -14.41681 -14.11403 -13.71232 -13.48114 -13.10898 -12.76791 -12.47677 -12.35674 -11.85701 -11.84935 -11.42059 -11.34850 -11.12823 -11.03035 -10.96190 -10.82403 -10.80091 -10.58111 -10.06982 -10.00975 -9.89252 -9.64467 -9.26118 -9.19493 -8.60061 -8.44433 -6.70142 -5.77320 -3.29907 2.40523 2.78909 3.34101 3.40428 3.46484 3.48557 3.57326 3.76557 4.47555 4.52644 4.98070 5.23153 5.25480 5.31926 5.46843 5.62577 5.74902 5.76132 5.80436 5.95248 6.01769 6.13245 6.18472 6.20909 6.33216 6.48831 6.55924 6.65812 6.90739 6.98795 7.04023 7.16048 7.35842 7.73079 7.75483 7.91740 8.40097 8.50475 8.97260 9.18845 9.79240 10.33351 11.25242 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.006109 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.656538 B = 4582.621465 C = 5599.864178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.039 4.039 3 C 0.255 3.745 4 N -0.545 5.545 5 C 0.224 3.776 6 C 0.249 3.751 7 H 0.074 0.926 8 C -0.148 4.148 9 N -0.566 5.566 10 C -0.238 4.238 11 H 0.071 0.929 12 C 0.015 3.985 13 N -0.881 5.881 14 Si 0.895 3.105 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.292 1.292 18 C 0.157 3.843 19 C -0.131 4.131 20 C 0.477 3.523 21 O -0.516 6.516 22 O -0.529 6.529 23 N -0.251 5.251 24 N -0.499 5.499 25 H 0.428 0.572 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.033 0.967 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 -7.934 -3.592 9.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.024 4.024 4 N -0.275 5.275 5 C -0.061 4.061 6 C 0.139 3.861 7 H 0.092 0.908 8 C -0.208 4.208 9 N -0.284 5.284 10 C -0.368 4.368 11 H 0.088 0.912 12 C -0.186 4.186 13 N -0.523 5.523 14 Si 0.725 3.275 15 H -0.200 1.200 16 H -0.216 1.216 17 H -0.219 1.219 18 C 0.030 3.970 19 C -0.172 4.172 20 C 0.319 3.681 21 O -0.403 6.403 22 O -0.340 6.340 23 N -0.077 5.077 24 N -0.216 5.216 25 H 0.271 0.729 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.130 0.870 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 3.614 -7.532 -3.215 8.952 hybrid contribution -0.680 0.613 1.065 1.404 sum 2.934 -6.919 -2.151 7.817 Atomic orbital electron populations 1.21737 0.93815 1.02050 1.03008 1.20013 0.96462 0.87410 1.04046 1.24073 0.98402 0.95826 0.84121 1.70286 1.22190 1.05593 1.29401 1.25411 0.97314 0.92263 0.91100 1.18983 0.92396 0.81865 0.92882 0.90802 1.22113 0.96063 0.99950 1.02644 1.44086 1.56274 1.16291 1.11790 1.19018 0.96515 1.28504 0.92810 0.91177 1.25117 0.94635 1.01486 0.97343 1.70025 0.98377 1.40870 1.43003 0.86348 0.78128 0.81196 0.81826 1.19995 1.21630 1.21934 1.20869 0.91758 0.94843 0.89566 1.22365 0.99779 0.99918 0.95094 1.24190 0.88448 0.76076 0.79347 1.90696 1.17175 1.62094 1.70367 1.84627 1.46133 1.57789 1.45463 1.78504 1.19429 0.96741 1.13031 1.48366 1.52667 1.11061 1.09549 0.72899 0.91670 0.92673 0.91669 0.88618 0.90242 0.92308 0.92067 0.93917 0.93701 0.86964 0.94840 0.87944 0.89419 0.74528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.04 -0.44 6.56 -27.88 -0.18 -0.63 16 3 C 0.25 4.34 7.49 -155.69 -1.17 3.17 16 4 N -0.54 -11.21 11.19 -8.16 -0.09 -11.30 16 5 C 0.22 5.02 6.93 -156.86 -1.09 3.93 16 6 C 0.25 5.32 3.30 -69.08 -0.23 5.10 16 7 H 0.07 1.51 7.87 -51.93 -0.41 1.10 16 8 C -0.15 -2.71 9.14 37.16 0.34 -2.37 16 9 N -0.57 -13.48 2.39 -166.98 -0.40 -13.88 16 10 C -0.24 -6.21 7.50 -15.06 -0.11 -6.32 16 11 H 0.07 1.86 6.83 -52.48 -0.36 1.50 16 12 C 0.01 0.40 4.93 -17.43 -0.09 0.31 16 13 N -0.88 -25.46 11.32 55.49 0.63 -24.83 16 14 Si 0.90 21.64 29.61 -169.99 -5.03 16.61 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 C 0.16 3.65 4.47 -4.04 -0.02 3.63 16 19 C -0.13 -2.46 6.13 -27.88 -0.17 -2.63 16 20 C 0.48 8.67 8.33 36.00 0.30 8.97 16 21 O -0.52 -11.12 16.74 -18.74 -0.31 -11.43 16 22 O -0.53 -7.53 13.42 -39.27 -0.53 -8.06 16 23 N -0.25 -5.75 11.35 32.42 0.37 -5.39 16 24 N -0.50 -8.98 7.45 32.62 0.24 -8.74 16 25 H 0.43 6.07 8.96 -182.34 -1.63 4.43 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.06 1.22 6.97 -51.93 -0.36 0.85 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.11 3.06 5.28 -51.93 -0.27 2.78 16 36 H 0.03 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.10 1.93 8.14 -51.93 -0.42 1.50 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.40 3.83 9.10 45.56 0.41 4.25 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -34.43 334.05 -8.11 -42.55 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.98 Total: 7.49 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -2.04 Total: 11.94 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: 0.75 Total: -64.13 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.84 Total: -19.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.43 -8.11 -42.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597644326.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.283 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds