Wall clock time and date at job start Tue Mar 31 2020 05:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 N 1.46499 * 109.47126 * 184.58768 * 3 2 1 5 5 N 1.40447 * 126.82559 * 94.55894 * 4 3 2 6 6 C 1.30713 * 106.79412 * 180.02562 * 5 4 3 7 7 N 1.33242 * 108.94624 * 0.23923 * 6 5 4 8 8 C 1.30833 * 109.83079 * 359.59101 * 7 6 5 9 9 C 1.50691 * 125.96390 * 180.12528 * 8 7 6 10 10 N 1.46498 * 109.47369 * 83.84867 * 9 8 7 11 11 C 1.36936 * 120.00089 * 263.81082 * 10 9 8 12 12 H 1.08001 * 119.99855 * 183.05156 * 11 10 9 13 13 C 1.38808 * 119.99843 * 3.05887 * 11 10 9 14 14 N 1.31614 * 120.00549 * 30.32935 * 13 11 10 15 15 Si 1.86803 * 119.99913 * 210.33187 * 13 11 10 16 16 H 1.48508 * 109.47091 * 59.99720 * 15 13 11 17 17 H 1.48503 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47169 * 299.99975 * 15 13 11 19 19 C 1.46507 * 120.00009 * 83.81184 * 10 9 8 20 20 C 1.52997 * 109.47380 * 90.45633 * 19 10 9 21 21 C 1.50695 * 109.47099 * 183.83442 * 20 19 10 22 22 O 1.20825 * 120.00377 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99841 * 180.02562 * 21 20 19 24 24 H 1.08998 * 109.46625 * 60.00190 * 1 2 3 25 25 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46735 * 300.00553 * 1 2 3 27 27 H 1.08999 * 109.47228 * 240.00017 * 2 1 3 28 28 H 1.09001 * 109.47122 * 119.99793 * 2 1 3 29 29 H 1.08994 * 109.47479 * 64.58738 * 3 2 1 30 30 H 1.09005 * 109.47503 * 304.58510 * 3 2 1 31 31 H 1.08001 * 125.53073 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.47252 * 203.85084 * 9 8 7 33 33 H 1.09003 * 109.47498 * 323.84650 * 9 8 7 34 34 H 0.96996 * 120.00329 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46916 * 210.45526 * 19 10 9 36 36 H 1.08997 * 109.47153 * 330.45284 * 19 10 9 37 37 H 1.09000 * 109.47039 * 303.83153 * 20 19 10 38 38 H 1.09004 * 109.47241 * 63.82904 * 20 19 10 39 39 H 0.96696 * 116.99628 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5008 1.4439 -0.1105 5 7 4.2558 1.5640 -1.2887 6 6 5.5140 1.5172 -0.9374 7 7 5.5888 1.3703 0.3848 8 6 4.3851 1.3301 0.8958 9 6 4.0484 1.1762 2.3565 10 7 4.1007 2.4861 3.0104 11 6 5.2341 2.8760 3.6726 12 1 5.2557 3.8203 4.1963 13 6 6.3553 2.0577 3.6705 14 7 6.5947 1.2718 2.6423 15 14 7.5246 2.0718 5.1273 16 1 6.7908 1.6720 6.3549 17 1 8.6340 1.1159 4.8809 18 1 8.0781 3.4383 5.3045 19 6 2.9404 3.3789 2.9559 20 6 2.0337 3.1110 4.1589 21 6 0.7946 3.9621 4.0534 22 8 0.6515 4.7070 3.1129 23 8 -0.1497 3.8935 5.0049 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7454 1.9320 0.9282 30 1 1.6112 1.9795 -0.8461 31 1 6.3563 1.5823 -1.6102 32 1 3.0459 0.7600 2.4564 33 1 4.7683 0.5064 2.8268 34 1 7.3780 0.6997 2.6411 35 1 3.2779 4.4151 2.9790 36 1 2.3856 3.1979 2.0353 37 1 1.7513 2.0583 4.1736 38 1 2.5666 3.3570 5.0774 39 1 -0.9264 4.4586 4.8941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605390163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:16 Heat of formation + Delta-G solvation = 33.478473 kcal Electronic energy + Delta-G solvation = -23191.576888 eV Core-core repulsion = 19751.821071 eV Total energy + Delta-G solvation = -3439.755818 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.95031 -39.98891 -36.42561 -35.79888 -35.26228 -32.26479 -31.38259 -30.75651 -29.40858 -26.61792 -25.71697 -24.81534 -22.06463 -21.79334 -20.76013 -20.34513 -19.06558 -17.90281 -17.14335 -16.29413 -15.91806 -15.75951 -15.09613 -14.80551 -14.65672 -13.95775 -13.70035 -13.48692 -13.32247 -13.11052 -12.59900 -12.44795 -12.27556 -12.01048 -11.80954 -11.38636 -11.35445 -11.21258 -11.08821 -10.91037 -10.68522 -10.50291 -10.34640 -10.26346 -10.07565 -9.82889 -8.67001 -8.54735 -8.42605 -8.38285 -7.15420 -5.67065 -3.08341 2.44210 2.63251 3.18454 3.29243 3.43490 3.50753 3.52048 4.20694 4.52837 4.87253 4.97891 5.22506 5.25281 5.30201 5.33108 5.37283 5.49277 5.56107 5.62238 5.74011 5.81515 5.82601 5.95665 6.03159 6.10678 6.21965 6.26444 6.41011 6.57138 6.60540 6.77160 7.19270 7.38148 7.54021 7.76750 7.98578 8.08493 8.21250 9.07973 9.45308 9.75533 10.16061 11.25565 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.008625 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.392312 B = 3245.523862 C = 5350.800461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.139 4.139 3 C 0.131 3.869 4 N -0.399 5.399 5 N -0.361 5.361 6 C 0.166 3.834 7 N -0.451 5.451 8 C 0.293 3.707 9 C 0.231 3.769 10 N -0.574 5.574 11 C -0.302 4.302 12 H 0.079 0.921 13 C 0.018 3.982 14 N -0.825 5.825 15 Si 0.882 3.118 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.286 1.286 19 C 0.160 3.840 20 C -0.134 4.134 21 C 0.479 3.521 22 O -0.523 6.523 23 O -0.524 6.524 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.197 0.803 32 H 0.031 0.969 33 H 0.129 0.871 34 H 0.257 0.743 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 -1.949 -0.059 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.008 3.992 4 N -0.192 5.192 5 N -0.191 5.191 6 C -0.137 4.137 7 N -0.175 5.175 8 C 0.015 3.985 9 C 0.101 3.899 10 N -0.294 5.294 11 C -0.429 4.429 12 H 0.096 0.904 13 C -0.185 4.185 14 N -0.464 5.464 15 Si 0.711 3.289 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.212 1.212 19 C 0.031 3.969 20 C -0.175 4.175 21 C 0.321 3.679 22 O -0.411 6.411 23 O -0.335 6.335 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.214 0.786 32 H 0.049 0.951 33 H 0.146 0.854 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.603 -2.060 -0.870 11.816 hybrid contribution 0.082 0.598 0.591 0.844 sum -11.521 -1.462 -0.279 11.616 Atomic orbital electron populations 1.21688 0.94784 1.01997 1.02039 1.21928 0.96201 0.96427 1.03237 1.21626 0.76493 0.97637 1.03468 1.50735 1.06591 1.56726 1.05123 1.77747 1.05514 1.29027 1.06787 1.26058 0.93798 0.99751 0.94096 1.71232 1.21665 1.20294 1.04273 1.26288 0.84164 0.93493 0.94580 1.19891 0.98313 0.89637 0.82027 1.44144 1.11236 1.14467 1.59556 1.18976 0.91167 1.05355 1.27377 0.90361 1.24894 0.96909 0.99964 0.96733 1.70521 1.26448 1.26487 1.22935 0.86706 0.80453 0.77367 0.84418 1.21180 1.21792 1.21243 1.20576 0.87995 0.95292 0.92989 1.22343 0.90125 0.99262 1.05772 1.24136 0.84191 0.80979 0.78547 1.90691 1.78405 1.38759 1.33274 1.84624 1.32504 1.65288 1.51096 0.92558 0.92267 0.92395 0.91355 0.91145 0.89327 0.89689 0.78650 0.95068 0.85397 0.93253 0.92410 0.93811 0.88302 0.87341 0.74157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.14 -1.80 6.26 -26.73 -0.17 -1.97 16 3 C 0.13 2.04 6.00 -4.04 -0.02 2.02 16 4 N -0.40 -8.00 3.64 -58.34 -0.21 -8.21 16 5 N -0.36 -7.65 12.70 29.29 0.37 -7.28 16 6 C 0.17 3.57 13.03 -91.81 -1.20 2.38 16 7 N -0.45 -10.99 8.71 -11.97 -0.10 -11.09 16 8 C 0.29 6.58 7.33 -155.69 -1.14 5.44 16 9 C 0.23 4.96 5.18 -5.20 -0.03 4.94 16 10 N -0.57 -12.80 2.52 -174.61 -0.44 -13.24 16 11 C -0.30 -7.59 9.67 -15.06 -0.15 -7.74 16 12 H 0.08 1.98 7.99 -52.49 -0.42 1.56 16 13 C 0.02 0.46 4.85 -17.43 -0.08 0.38 16 14 N -0.83 -21.86 8.05 55.49 0.45 -21.41 16 15 Si 0.88 20.35 29.65 -169.99 -5.04 15.31 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 C 0.16 3.04 5.01 -4.04 -0.02 3.02 16 20 C -0.13 -2.05 6.13 -27.89 -0.17 -2.22 16 21 C 0.48 6.89 8.33 36.00 0.30 7.18 16 22 O -0.52 -9.00 16.70 -18.75 -0.31 -9.31 16 23 O -0.52 -5.90 13.42 -39.27 -0.53 -6.43 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.93 7.86 -51.93 -0.41 0.53 16 29 H 0.09 1.35 5.53 -51.93 -0.29 1.06 16 30 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.20 3.47 8.06 -52.49 -0.42 3.05 16 32 H 0.03 0.57 7.27 -51.93 -0.38 0.19 16 33 H 0.13 3.08 5.63 -51.93 -0.29 2.78 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.06 1.19 8.04 -51.93 -0.42 0.77 16 36 H 0.04 0.82 5.66 -51.93 -0.29 0.53 16 37 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 39 H 0.40 2.73 9.10 45.56 0.41 3.14 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -31.61 328.86 -7.77 -39.38 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.60 Total: 5.01 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -2.31 Total: 12.32 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.06 Total: -61.24 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.84 Total: -15.74 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.04 Total: 15.31 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.61 -7.77 -39.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605390163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.854 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds