Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47180 * 2 1 4 4 N 1.46499 * 109.47126 * 184.58768 * 3 2 1 5 5 N 1.40447 * 126.82559 * 94.55894 * 4 3 2 6 6 C 1.30713 * 106.79412 * 180.02562 * 5 4 3 7 7 N 1.33242 * 108.94624 * 0.23923 * 6 5 4 8 8 C 1.30833 * 109.83079 * 359.59101 * 7 6 5 9 9 C 1.50691 * 125.96390 * 180.12528 * 8 7 6 10 10 N 1.46498 * 109.47369 * 83.84867 * 9 8 7 11 11 C 1.36936 * 120.00089 * 263.81082 * 10 9 8 12 12 H 1.08001 * 119.99855 * 183.05156 * 11 10 9 13 13 C 1.38808 * 119.99843 * 3.05887 * 11 10 9 14 14 N 1.31614 * 120.00549 * 30.32935 * 13 11 10 15 15 Si 1.86803 * 119.99913 * 210.33187 * 13 11 10 16 16 H 1.48508 * 109.47091 * 59.99720 * 15 13 11 17 17 H 1.48503 * 109.47413 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47169 * 299.99975 * 15 13 11 19 19 C 1.46507 * 120.00009 * 83.81184 * 10 9 8 20 20 C 1.52997 * 109.47380 * 90.45633 * 19 10 9 21 21 C 1.50695 * 109.47099 * 183.83442 * 20 19 10 22 22 O 1.20825 * 120.00377 * 359.97438 * 21 20 19 23 23 O 1.34234 * 119.99841 * 180.02562 * 21 20 19 24 24 H 1.08998 * 109.46625 * 60.00190 * 1 2 3 25 25 H 1.09000 * 109.47075 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46735 * 300.00553 * 1 2 3 27 27 H 1.08999 * 109.47228 * 240.00017 * 2 1 3 28 28 H 1.09001 * 109.47122 * 119.99793 * 2 1 3 29 29 H 1.08994 * 109.47479 * 64.58738 * 3 2 1 30 30 H 1.09005 * 109.47503 * 304.58510 * 3 2 1 31 31 H 1.08001 * 125.53073 * 179.97438 * 6 5 4 32 32 H 1.09005 * 109.47252 * 203.85084 * 9 8 7 33 33 H 1.09003 * 109.47498 * 323.84650 * 9 8 7 34 34 H 0.96996 * 120.00329 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.46916 * 210.45526 * 19 10 9 36 36 H 1.08997 * 109.47153 * 330.45284 * 19 10 9 37 37 H 1.09000 * 109.47039 * 303.83153 * 20 19 10 38 38 H 1.09004 * 109.47241 * 63.82904 * 20 19 10 39 39 H 0.96696 * 116.99628 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5008 1.4439 -0.1105 5 7 4.2558 1.5640 -1.2887 6 6 5.5140 1.5172 -0.9374 7 7 5.5888 1.3703 0.3848 8 6 4.3851 1.3301 0.8958 9 6 4.0484 1.1762 2.3565 10 7 4.1007 2.4861 3.0104 11 6 5.2341 2.8760 3.6726 12 1 5.2557 3.8203 4.1963 13 6 6.3553 2.0577 3.6705 14 7 6.5947 1.2718 2.6423 15 14 7.5246 2.0718 5.1273 16 1 6.7908 1.6720 6.3549 17 1 8.6340 1.1159 4.8809 18 1 8.0781 3.4383 5.3045 19 6 2.9404 3.3789 2.9559 20 6 2.0337 3.1110 4.1589 21 6 0.7946 3.9621 4.0534 22 8 0.6515 4.7070 3.1129 23 8 -0.1497 3.8935 5.0049 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7454 1.9320 0.9282 30 1 1.6112 1.9795 -0.8461 31 1 6.3563 1.5823 -1.6102 32 1 3.0459 0.7600 2.4564 33 1 4.7683 0.5064 2.8268 34 1 7.3780 0.6997 2.6411 35 1 3.2779 4.4151 2.9790 36 1 2.3856 3.1979 2.0353 37 1 1.7513 2.0583 4.1736 38 1 2.5666 3.3570 5.0774 39 1 -0.9264 4.4586 4.8941 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605390163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = 15.028858 kcal Electronic energy + Delta-G solvation = -23192.376924 eV Core-core repulsion = 19751.821071 eV Total energy + Delta-G solvation = -3440.555853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.58526 -41.13197 -37.97122 -36.96900 -36.50951 -33.93242 -32.73514 -32.43011 -31.00024 -28.17345 -27.14267 -26.36350 -23.51768 -23.06743 -22.23939 -21.69503 -20.68022 -19.07221 -18.80268 -17.55545 -17.46535 -16.96606 -16.50039 -16.30710 -16.20236 -15.41716 -15.35530 -15.07790 -14.72666 -14.30849 -14.01256 -13.83426 -13.47852 -13.27895 -13.05467 -13.01908 -12.68032 -12.52420 -12.45605 -12.33794 -12.27004 -12.04219 -11.79599 -11.74717 -11.58226 -11.52840 -10.39048 -10.23467 -10.14982 -10.07942 -8.96438 -7.59172 -5.00635 0.99225 1.30968 1.56894 1.62302 1.66597 1.73076 2.20353 2.53818 2.67661 3.37039 3.63050 3.75390 3.80572 3.92972 4.10779 4.12836 4.15909 4.26237 4.41366 4.53890 4.54312 4.72030 4.77025 4.85685 4.93873 5.00200 5.11230 5.16407 5.24272 5.36840 5.46880 5.70117 5.78014 5.80899 5.92672 6.31977 6.39531 7.10437 7.19563 7.79000 7.90995 8.29906 9.29654 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.008625 C = 0.005232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.392312 B = 3245.523862 C = 5350.800461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.123 3.877 4 N -0.393 5.393 5 N -0.368 5.368 6 C 0.155 3.845 7 N -0.494 5.494 8 C 0.281 3.719 9 C 0.238 3.762 10 N -0.585 5.585 11 C -0.306 4.306 12 H 0.071 0.929 13 C -0.021 4.021 14 N -0.840 5.840 15 Si 0.937 3.063 16 H -0.278 1.278 17 H -0.301 1.301 18 H -0.293 1.293 19 C 0.163 3.837 20 C -0.124 4.124 21 C 0.493 3.507 22 O -0.555 6.555 23 O -0.512 6.512 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.223 0.777 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.247 0.753 35 H 0.034 0.966 36 H 0.046 0.954 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -2.190 0.648 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.001 3.999 4 N -0.186 5.186 5 N -0.197 5.197 6 C -0.148 4.148 7 N -0.219 5.219 8 C 0.002 3.998 9 C 0.108 3.892 10 N -0.306 5.306 11 C -0.434 4.434 12 H 0.089 0.911 13 C -0.223 4.223 14 N -0.480 5.480 15 Si 0.766 3.234 16 H -0.204 1.204 17 H -0.228 1.228 18 H -0.220 1.220 19 C 0.036 3.964 20 C -0.164 4.164 21 C 0.337 3.663 22 O -0.446 6.446 23 O -0.325 6.325 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.239 0.761 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -13.888 -2.289 -0.135 14.076 hybrid contribution 0.663 0.734 0.355 1.050 sum -13.225 -1.556 0.220 13.318 Atomic orbital electron populations 1.21662 0.92077 1.03258 1.02844 1.21862 0.98353 0.94160 1.02514 1.22014 0.74000 0.99759 1.04133 1.50928 1.08011 1.55442 1.04200 1.77674 1.05561 1.28997 1.07502 1.26581 0.94770 0.99650 0.93765 1.71144 1.23428 1.21620 1.05750 1.26320 0.84378 0.93907 0.95230 1.19778 0.99263 0.88911 0.81258 1.44224 1.11415 1.15158 1.59798 1.19105 0.92111 1.05023 1.27196 0.91101 1.25381 0.98283 1.00418 0.98176 1.70708 1.26430 1.27132 1.23742 0.85867 0.78711 0.76382 0.82440 1.20419 1.22788 1.21974 1.20544 0.87546 0.93411 0.94858 1.21993 0.90175 1.00740 1.03533 1.23685 0.84292 0.80019 0.78333 1.90699 1.79152 1.40037 1.34712 1.84540 1.32915 1.65574 1.49464 0.91907 0.90803 0.91459 0.92534 0.91438 0.88710 0.88845 0.76114 0.91621 0.88065 0.94333 0.94772 0.93593 0.86247 0.87230 0.71421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.91 71.98 0.71 -1.65 16 2 C -0.13 -3.11 6.26 30.59 0.19 -2.91 16 3 C 0.12 3.61 6.00 86.38 0.52 4.12 16 4 N -0.39 -15.51 3.64 -338.50 -1.23 -16.74 16 5 N -0.37 -15.42 12.70 -61.24 -0.78 -16.20 16 6 C 0.16 6.70 13.03 180.76 2.36 9.05 16 7 N -0.49 -24.43 8.71 -191.78 -1.67 -26.10 16 8 C 0.28 12.60 7.33 138.22 1.01 13.61 16 9 C 0.24 10.11 5.18 85.63 0.44 10.55 16 10 N -0.59 -25.90 2.52 -706.35 -1.78 -27.68 16 11 C -0.31 -15.48 9.67 84.03 0.81 -14.67 16 12 H 0.07 3.61 7.99 -2.91 -0.02 3.59 16 13 C -0.02 -1.10 4.85 84.86 0.41 -0.69 16 14 N -0.84 -45.37 8.05 21.65 0.17 -45.19 16 15 Si 0.94 42.43 29.65 68.60 2.03 44.47 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 19 C 0.16 6.07 5.01 86.38 0.43 6.50 16 20 C -0.12 -3.52 6.13 29.85 0.18 -3.34 16 21 C 0.49 12.88 8.33 71.23 0.59 13.48 16 22 O -0.55 -18.07 16.70 21.97 0.37 -17.70 16 23 O -0.51 -9.68 13.42 -51.45 -0.69 -10.37 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 29 H 0.09 2.68 5.53 -2.39 -0.01 2.66 16 30 H 0.09 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.22 7.83 8.06 -2.91 -0.02 7.81 16 32 H 0.07 2.27 7.27 -2.38 -0.02 2.25 16 33 H 0.10 4.92 5.63 -2.39 -0.01 4.90 16 34 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 35 H 0.03 1.41 8.04 -2.39 -0.02 1.39 16 36 H 0.05 1.68 5.66 -2.39 -0.01 1.66 16 37 H 0.12 2.92 8.14 -2.39 -0.02 2.91 16 38 H 0.11 3.14 8.14 -2.38 -0.02 3.12 16 39 H 0.42 4.15 9.10 -74.06 -0.67 3.48 16 Total: -1.00 -68.34 328.86 4.49 -63.85 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.40 Total: 17.60 kcal Atomic # 6 Polarization: 26.39 SS G_CDS: 7.67 Total: 34.06 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -5.28 Total: -131.91 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.32 Total: -28.07 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.47 kcal Total: -68.34 4.49 -63.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605390163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.881 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds