Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47483 * 2 1 4 4 N 1.28599 * 124.62068 * 90.02215 * 3 2 1 5 5 C 1.31382 * 108.71981 * 179.97438 * 4 3 2 6 6 C 1.50697 * 127.05195 * 180.02562 * 5 4 3 7 7 C 1.39674 * 105.89982 * 359.97438 * 5 4 3 8 8 C 1.50697 * 127.05201 * 180.02562 * 7 5 4 9 9 N 1.46502 * 109.47427 * 95.55252 * 8 7 5 10 10 C 1.36936 * 119.99735 * 93.02710 * 9 8 7 11 11 H 1.07997 * 120.00141 * 340.39583 * 10 9 8 12 12 C 1.38819 * 119.99730 * 160.39810 * 10 9 8 13 13 N 1.31618 * 120.00092 * 355.51164 * 12 10 9 14 14 Si 1.86799 * 119.99960 * 175.51556 * 12 10 9 15 15 H 1.48497 * 109.47064 * 59.99578 * 14 12 10 16 16 H 1.48494 * 109.47128 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46980 * 299.99875 * 14 12 10 18 18 C 1.46494 * 119.99856 * 273.02598 * 9 8 7 19 19 C 1.52998 * 109.47689 * 276.58365 * 18 9 8 20 20 C 1.50700 * 109.47307 * 187.53903 * 19 18 9 21 21 O 1.20822 * 120.00193 * 359.97438 * 20 19 18 22 22 O 1.34227 * 119.99720 * 180.02562 * 20 19 18 23 23 N 1.28600 * 124.61561 * 269.98385 * 3 2 1 24 24 H 1.08995 * 109.47629 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47405 * 300.00685 * 1 2 3 26 26 H 1.09008 * 109.46777 * 60.00156 * 1 2 3 27 27 H 1.09000 * 109.46697 * 239.99285 * 2 1 3 28 28 H 1.09001 * 109.46286 * 120.00271 * 2 1 3 29 29 H 1.08998 * 109.47249 * 85.24688 * 6 5 4 30 30 H 1.08996 * 109.46953 * 205.25477 * 6 5 4 31 31 H 1.09005 * 109.46991 * 325.25126 * 6 5 4 32 32 H 1.09002 * 109.47388 * 215.55762 * 8 7 5 33 33 H 1.09001 * 109.46938 * 335.55345 * 8 7 5 34 34 H 0.97000 * 120.00096 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47186 * 36.58611 * 18 9 8 36 36 H 1.09005 * 109.47160 * 156.58177 * 18 9 8 37 37 H 1.09003 * 109.47071 * 307.54614 * 19 18 9 38 38 H 1.09007 * 109.46694 * 67.53601 * 19 18 9 39 39 H 0.96700 * 117.00072 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6841 3.2609 0.6983 6 6 3.0861 4.3945 1.6062 7 6 2.6845 3.2608 -0.6984 8 6 3.0865 4.3943 -1.6064 9 7 4.4856 4.2265 -2.0070 10 6 4.7911 3.5693 -3.1689 11 1 4.0657 2.9111 -3.6237 12 6 6.0332 3.7493 -3.7621 13 7 6.8838 4.6177 -3.2576 14 14 6.4972 2.7590 -5.2765 15 1 5.5329 3.0445 -6.3692 16 1 7.8655 3.1351 -5.7137 17 1 6.4616 1.3106 -4.9508 18 6 5.5579 4.7618 -1.1645 19 6 5.7625 6.2448 -1.4801 20 6 6.9817 6.7498 -0.7524 21 8 7.6211 6.0006 -0.0527 22 8 7.3566 8.0322 -0.8808 23 7 2.2623 2.0697 -1.0584 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 4.1313 4.2776 1.8925 30 1 2.9563 5.3421 1.0836 31 1 2.4614 4.3837 2.4994 32 1 2.4520 4.3923 -2.4928 33 1 2.9706 5.3410 -1.0788 34 1 7.7516 4.7437 -3.6723 35 1 5.2866 4.6477 -0.1149 36 1 6.4814 4.2175 -1.3622 37 1 5.9014 6.3720 -2.5537 38 1 4.8872 6.8089 -1.1577 39 1 8.1450 8.3099 -0.3945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605937128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = 36.525061 kcal Electronic energy + Delta-G solvation = -22836.471645 eV Core-core repulsion = 19396.847937 eV Total energy + Delta-G solvation = -3439.623708 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.91967 -39.30743 -36.34138 -35.26857 -34.67925 -32.34414 -31.87130 -30.77210 -29.86928 -27.59717 -26.29078 -24.52292 -23.12051 -21.77434 -20.55058 -20.34120 -19.39810 -17.38071 -16.98582 -16.45695 -16.06584 -15.46700 -15.17836 -14.72250 -14.55072 -13.70632 -13.59282 -13.39349 -13.24943 -13.03046 -12.63782 -12.40409 -12.22122 -12.11492 -11.94872 -11.45028 -11.37697 -11.16772 -10.87860 -10.78901 -10.59766 -10.39330 -10.14541 -10.01372 -9.95449 -9.67901 -9.57519 -9.43522 -8.50222 -8.37913 -6.91831 -5.74586 -3.23802 2.37764 2.75225 3.04341 3.19808 3.39990 3.45391 3.46792 3.99393 4.48463 4.51313 4.86658 4.99690 5.11835 5.32009 5.38415 5.43991 5.61055 5.63371 5.79043 5.81307 5.92361 5.94820 6.14571 6.25698 6.36780 6.39653 6.56271 6.77155 6.79962 6.85937 6.90632 7.22479 7.29853 7.56357 7.78668 7.86908 8.39902 8.78839 8.98089 9.22319 9.79105 10.24025 11.26119 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.006247 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.858931 B = 4481.168808 C = 6080.001907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.142 3.858 3 N -0.171 5.171 4 N -0.305 5.305 5 C -0.002 4.002 6 C -0.058 4.058 7 C 0.010 3.990 8 C 0.225 3.775 9 N -0.582 5.582 10 C -0.241 4.241 11 H 0.074 0.926 12 C -0.003 4.003 13 N -0.913 5.913 14 Si 0.913 3.087 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.287 1.287 18 C 0.184 3.816 19 C -0.108 4.108 20 C 0.490 3.510 21 O -0.529 6.529 22 O -0.532 6.532 23 N -0.281 5.281 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.253 0.747 35 H 0.012 0.988 36 H 0.107 0.893 37 H 0.135 0.865 38 H 0.060 0.940 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 -0.450 6.852 10.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 N -0.071 5.071 4 N -0.148 5.148 5 C -0.165 4.165 6 C -0.117 4.117 7 C -0.157 4.157 8 C 0.095 3.905 9 N -0.301 5.301 10 C -0.370 4.370 11 H 0.092 0.908 12 C -0.199 4.199 13 N -0.561 5.561 14 Si 0.743 3.257 15 H -0.210 1.210 16 H -0.217 1.217 17 H -0.213 1.213 18 C 0.058 3.942 19 C -0.148 4.148 20 C 0.333 3.667 21 O -0.418 6.418 22 O -0.343 6.343 23 N -0.122 5.122 24 H 0.098 0.902 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.030 0.970 36 H 0.125 0.875 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.003 -2.118 6.721 11.433 hybrid contribution 1.264 0.333 -0.450 1.382 sum -7.739 -1.785 6.272 10.120 Atomic orbital electron populations 1.22154 0.93841 1.03166 1.03406 1.21737 0.95385 0.75642 1.05081 1.47896 1.46515 1.12963 0.99715 1.73788 1.19220 1.05435 1.16356 1.22986 1.04978 0.94141 0.94397 1.19993 1.01550 0.93278 0.96871 1.24757 1.01316 0.95505 0.94096 1.19110 0.87307 0.89620 0.94462 1.44045 0.98654 1.64152 1.23270 1.19331 0.99885 1.19238 0.98523 0.90777 1.24910 0.97633 0.98587 0.98723 1.69978 1.08448 1.36387 1.41259 0.86195 0.77261 0.79588 0.82626 1.21034 1.21690 1.21336 1.20644 0.94256 0.90240 0.89041 1.22318 0.89115 0.99439 1.03900 1.24220 0.86598 0.77948 0.77885 1.90606 1.55407 1.56708 1.39057 1.84645 1.48357 1.31450 1.69877 1.74061 1.17774 1.05329 1.15009 0.90217 0.91772 0.91511 0.87885 0.88244 0.90713 0.90456 0.91557 0.91371 0.92010 0.93617 0.96971 0.87474 0.84748 0.92170 0.75203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.14 1.74 7.26 -4.04 -0.03 1.72 16 3 N -0.17 -3.03 3.95 -10.62 -0.04 -3.07 16 4 N -0.31 -5.63 12.05 33.71 0.41 -5.23 16 5 C 0.00 -0.03 7.35 -82.25 -0.60 -0.63 16 6 C -0.06 -0.85 9.96 36.00 0.36 -0.49 16 7 C 0.01 0.20 6.94 -82.25 -0.57 -0.37 16 8 C 0.23 4.50 6.16 -5.19 -0.03 4.46 16 9 N -0.58 -13.75 2.52 -174.61 -0.44 -14.18 16 10 C -0.24 -6.31 9.71 -15.06 -0.15 -6.46 16 11 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 12 C 0.00 -0.07 5.25 -17.43 -0.09 -0.16 16 13 N -0.91 -24.60 7.96 55.49 0.44 -24.16 16 14 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 C 0.18 4.31 4.28 -4.05 -0.02 4.30 16 19 C -0.11 -2.28 5.38 -27.88 -0.15 -2.43 16 20 C 0.49 10.00 8.33 36.01 0.30 10.30 16 21 O -0.53 -12.20 16.62 -18.75 -0.31 -12.51 16 22 O -0.53 -8.88 13.42 -39.25 -0.53 -9.40 16 23 N -0.28 -5.70 12.05 33.71 0.41 -5.29 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 30 H 0.08 1.02 7.27 -51.93 -0.38 0.64 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 1.35 8.02 -51.93 -0.42 0.94 16 33 H 0.06 1.07 7.22 -51.93 -0.37 0.69 16 34 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 35 H 0.01 0.27 7.54 -51.93 -0.39 -0.12 16 36 H 0.11 2.97 5.68 -51.93 -0.29 2.68 16 37 H 0.14 3.20 6.41 -51.93 -0.33 2.87 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.39 4.65 9.10 45.56 0.41 5.06 16 LS Contribution 332.64 15.07 5.01 5.01 Total: -1.00 -32.53 332.64 -5.37 -37.90 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.69 Total: 5.35 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -0.60 Total: 8.96 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: 0.77 Total: -51.94 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.84 Total: -21.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.53 -5.37 -37.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605937128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.425 kcal (2) G-P(sol) polarization free energy of solvation -32.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds