Wall clock time and date at job start Tue Mar 31 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47483 * 2 1 4 4 N 1.28599 * 124.62068 * 90.02215 * 3 2 1 5 5 C 1.31382 * 108.71981 * 179.97438 * 4 3 2 6 6 C 1.50697 * 127.05195 * 180.02562 * 5 4 3 7 7 C 1.39674 * 105.89982 * 359.97438 * 5 4 3 8 8 C 1.50697 * 127.05201 * 180.02562 * 7 5 4 9 9 N 1.46502 * 109.47427 * 95.55252 * 8 7 5 10 10 C 1.36936 * 119.99735 * 93.02710 * 9 8 7 11 11 H 1.07997 * 120.00141 * 340.39583 * 10 9 8 12 12 C 1.38819 * 119.99730 * 160.39810 * 10 9 8 13 13 N 1.31618 * 120.00092 * 355.51164 * 12 10 9 14 14 Si 1.86799 * 119.99960 * 175.51556 * 12 10 9 15 15 H 1.48497 * 109.47064 * 59.99578 * 14 12 10 16 16 H 1.48494 * 109.47128 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46980 * 299.99875 * 14 12 10 18 18 C 1.46494 * 119.99856 * 273.02598 * 9 8 7 19 19 C 1.52998 * 109.47689 * 276.58365 * 18 9 8 20 20 C 1.50700 * 109.47307 * 187.53903 * 19 18 9 21 21 O 1.20822 * 120.00193 * 359.97438 * 20 19 18 22 22 O 1.34227 * 119.99720 * 180.02562 * 20 19 18 23 23 N 1.28600 * 124.61561 * 269.98385 * 3 2 1 24 24 H 1.08995 * 109.47629 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47405 * 300.00685 * 1 2 3 26 26 H 1.09008 * 109.46777 * 60.00156 * 1 2 3 27 27 H 1.09000 * 109.46697 * 239.99285 * 2 1 3 28 28 H 1.09001 * 109.46286 * 120.00271 * 2 1 3 29 29 H 1.08998 * 109.47249 * 85.24688 * 6 5 4 30 30 H 1.08996 * 109.46953 * 205.25477 * 6 5 4 31 31 H 1.09005 * 109.46991 * 325.25126 * 6 5 4 32 32 H 1.09002 * 109.47388 * 215.55762 * 8 7 5 33 33 H 1.09001 * 109.46938 * 335.55345 * 8 7 5 34 34 H 0.97000 * 120.00096 * 180.02562 * 13 12 10 35 35 H 1.09004 * 109.47186 * 36.58611 * 18 9 8 36 36 H 1.09005 * 109.47160 * 156.58177 * 18 9 8 37 37 H 1.09003 * 109.47071 * 307.54614 * 19 18 9 38 38 H 1.09007 * 109.46694 * 67.53601 * 19 18 9 39 39 H 0.96700 * 117.00072 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 7 2.2624 2.0698 1.0583 5 6 2.6841 3.2609 0.6983 6 6 3.0861 4.3945 1.6062 7 6 2.6845 3.2608 -0.6984 8 6 3.0865 4.3943 -1.6064 9 7 4.4856 4.2265 -2.0070 10 6 4.7911 3.5693 -3.1689 11 1 4.0657 2.9111 -3.6237 12 6 6.0332 3.7493 -3.7621 13 7 6.8838 4.6177 -3.2576 14 14 6.4972 2.7590 -5.2765 15 1 5.5329 3.0445 -6.3692 16 1 7.8655 3.1351 -5.7137 17 1 6.4616 1.3106 -4.9508 18 6 5.5579 4.7618 -1.1645 19 6 5.7625 6.2448 -1.4801 20 6 6.9817 6.7498 -0.7524 21 8 7.6211 6.0006 -0.0527 22 8 7.3566 8.0322 -0.8808 23 7 2.2623 2.0697 -1.0584 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 1.8933 -0.5140 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 4.1313 4.2776 1.8925 30 1 2.9563 5.3421 1.0836 31 1 2.4614 4.3837 2.4994 32 1 2.4520 4.3923 -2.4928 33 1 2.9706 5.3410 -1.0788 34 1 7.7516 4.7437 -3.6723 35 1 5.2866 4.6477 -0.1149 36 1 6.4814 4.2175 -1.3622 37 1 5.9014 6.3720 -2.5537 38 1 4.8872 6.8089 -1.1577 39 1 8.1450 8.3099 -0.3945 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605937128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:11 Heat of formation + Delta-G solvation = 14.404476 kcal Electronic energy + Delta-G solvation = -22837.430865 eV Core-core repulsion = 19396.847937 eV Total energy + Delta-G solvation = -3440.582928 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.31967 -40.89810 -38.05428 -36.78466 -35.94117 -33.84498 -33.37524 -32.40706 -31.45676 -28.87127 -27.83947 -26.32858 -24.36083 -23.33830 -22.00918 -21.76782 -21.05272 -19.03819 -18.51313 -17.98632 -17.48990 -17.07339 -16.90544 -16.45510 -15.59902 -15.42960 -15.16428 -14.86019 -14.62441 -14.16546 -13.96566 -13.83614 -13.71209 -13.30710 -13.06925 -12.99779 -12.93031 -12.68652 -12.49264 -12.28932 -12.25829 -12.03955 -11.93011 -11.73488 -11.58713 -11.47056 -11.26052 -10.91974 -10.42975 -9.77361 -8.79791 -7.74578 -5.23460 0.97535 1.47948 1.50275 1.54331 1.58646 1.59757 1.60696 2.50249 2.59713 3.25723 3.39959 3.85178 3.94488 3.97570 4.04895 4.23423 4.36757 4.47463 4.52918 4.71863 4.74336 4.76312 4.82494 4.95953 4.99778 5.05231 5.11101 5.11658 5.15417 5.41993 5.53164 5.63019 5.77866 5.89971 5.96222 5.99483 6.43450 7.22755 7.32557 7.55726 7.89716 8.29798 9.22278 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.014047 B = 0.006247 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.858931 B = 4481.168808 C = 6080.001907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.125 3.875 3 N -0.167 5.167 4 N -0.313 5.313 5 C -0.010 4.010 6 C -0.057 4.057 7 C -0.013 4.013 8 C 0.228 3.772 9 N -0.593 5.593 10 C -0.246 4.246 11 H 0.064 0.936 12 C -0.045 4.045 13 N -0.922 5.922 14 Si 0.963 3.037 15 H -0.277 1.277 16 H -0.295 1.295 17 H -0.293 1.293 18 C 0.195 3.805 19 C -0.100 4.100 20 C 0.497 3.503 21 O -0.561 6.561 22 O -0.520 6.520 23 N -0.307 5.307 24 H 0.115 0.885 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.244 0.756 35 H 0.020 0.980 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -0.124 7.680 12.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.007 3.993 3 N -0.068 5.068 4 N -0.156 5.156 5 C -0.172 4.172 6 C -0.115 4.115 7 C -0.178 4.178 8 C 0.099 3.901 9 N -0.313 5.313 10 C -0.376 4.376 11 H 0.082 0.918 12 C -0.239 4.239 13 N -0.570 5.570 14 Si 0.793 3.207 15 H -0.203 1.203 16 H -0.221 1.221 17 H -0.221 1.221 18 C 0.069 3.931 19 C -0.140 4.140 20 C 0.342 3.658 21 O -0.452 6.452 22 O -0.333 6.333 23 N -0.149 5.149 24 H 0.133 0.867 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -10.012 -1.761 7.559 12.668 hybrid contribution 1.523 0.174 -0.652 1.666 sum -8.489 -1.587 6.908 11.059 Atomic orbital electron populations 1.22095 0.91792 1.05160 1.02341 1.22274 0.97099 0.73527 1.06418 1.48449 1.45383 1.14068 0.98929 1.73778 1.19533 1.05669 1.16652 1.23512 1.04506 0.94979 0.94248 1.20118 1.01450 0.92648 0.97308 1.24698 1.02588 0.95592 0.94959 1.19214 0.85086 0.91053 0.94700 1.44112 1.00199 1.64369 1.22645 1.19405 0.99723 1.19209 0.99278 0.91805 1.25453 0.97898 0.99747 1.00833 1.70167 1.08020 1.37137 1.41655 0.85414 0.76703 0.77994 0.80615 1.20271 1.22137 1.22053 1.20328 0.92342 0.91160 0.89254 1.22011 0.91042 0.98479 1.02453 1.23948 0.86048 0.78659 0.77122 1.90603 1.56238 1.57821 1.40546 1.84555 1.49646 1.29214 1.69854 1.73985 1.18494 1.06004 1.16441 0.86664 0.92309 0.92956 0.87258 0.86233 0.91297 0.88842 0.89394 0.91848 0.89047 0.94608 0.96184 0.91988 0.87194 0.88898 0.72365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.24 71.98 0.74 -2.05 16 2 C 0.13 2.89 7.26 86.38 0.63 3.52 16 3 N -0.17 -5.77 3.95 -187.51 -0.74 -6.51 16 4 N -0.31 -11.18 12.05 -47.25 -0.57 -11.75 16 5 C -0.01 -0.35 7.35 42.97 0.32 -0.03 16 6 C -0.06 -1.54 9.96 71.24 0.71 -0.83 16 7 C -0.01 -0.51 6.94 42.97 0.30 -0.21 16 8 C 0.23 8.94 6.16 85.63 0.53 9.47 16 9 N -0.59 -28.01 2.52 -706.34 -1.78 -29.79 16 10 C -0.25 -13.07 9.71 84.04 0.82 -12.25 16 11 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 12 C -0.05 -2.41 5.25 84.86 0.45 -1.97 16 13 N -0.92 -50.44 7.96 21.65 0.17 -50.27 16 14 Si 0.96 45.06 29.56 68.60 2.03 47.09 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 17 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 18 C 0.19 9.13 4.28 86.38 0.37 9.50 16 19 C -0.10 -4.13 5.38 29.85 0.16 -3.97 16 20 C 0.50 19.67 8.33 71.24 0.59 20.27 16 21 O -0.56 -25.57 16.62 21.98 0.37 -25.20 16 22 O -0.52 -16.09 13.42 -51.39 -0.69 -16.78 16 23 N -0.31 -12.39 12.05 -47.25 -0.57 -12.96 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.07 1.97 7.96 -2.39 -0.02 1.95 16 30 H 0.09 2.20 7.27 -2.39 -0.02 2.19 16 31 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.06 2.50 8.02 -2.39 -0.02 2.48 16 33 H 0.09 2.97 7.22 -2.39 -0.02 2.95 16 34 H 0.24 13.42 8.31 -92.71 -0.77 12.65 16 35 H 0.02 0.89 7.54 -2.39 -0.02 0.87 16 36 H 0.06 3.51 5.68 -2.38 -0.01 3.49 16 37 H 0.11 5.21 6.41 -2.39 -0.02 5.19 16 38 H 0.09 3.17 8.14 -2.38 -0.02 3.15 16 39 H 0.42 8.73 9.10 -74.06 -0.67 8.05 16 Total: -1.00 -70.78 332.64 4.22 -66.57 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.40 Total: 18.15 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 5.60 Total: 21.45 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.49 Total: -111.27 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -0.32 Total: -41.98 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.78 4.22 -66.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605937128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.972 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds