Wall clock time and date at job start Tue Mar 31 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 C 1.53006 * 109.46975 * 240.00228 * 2 1 3 5 5 N 1.46500 * 109.47178 * 120.00610 * 2 1 3 6 6 N 1.40447 * 126.82316 * 240.13485 * 5 2 1 7 7 C 1.30707 * 106.79137 * 180.02562 * 6 5 2 8 8 N 1.33238 * 108.95010 * 0.02562 * 7 6 5 9 9 C 1.30833 * 109.82760 * 0.02562 * 8 7 6 10 10 C 1.50700 * 125.95980 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47037 * 298.59706 * 10 9 8 12 12 C 1.36932 * 120.00125 * 83.96280 * 11 10 9 13 13 H 1.08005 * 119.99789 * 18.40920 * 12 11 10 14 14 C 1.38807 * 120.00168 * 198.41671 * 12 11 10 15 15 N 1.31624 * 120.00028 * 16.80127 * 14 12 11 16 16 Si 1.86803 * 120.00020 * 196.80724 * 14 12 11 17 17 H 1.48495 * 109.47346 * 59.99973 * 16 14 12 18 18 H 1.48505 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47222 * 299.99475 * 16 14 12 20 20 C 1.46501 * 119.99721 * 263.95561 * 11 10 9 21 21 C 1.50702 * 109.46611 * 84.84866 * 20 11 10 22 22 O 1.20827 * 120.00338 * 359.97438 * 21 20 11 23 23 O 1.34234 * 119.99910 * 179.97438 * 21 20 11 24 24 H 1.08998 * 109.47163 * 305.55687 * 1 2 3 25 25 H 1.09002 * 109.47294 * 65.55546 * 1 2 3 26 26 H 1.09003 * 109.47330 * 185.55359 * 1 2 3 27 27 H 1.09002 * 109.47064 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47538 * 300.00180 * 3 2 1 29 29 H 1.09003 * 109.46870 * 60.00537 * 3 2 1 30 30 H 1.08997 * 109.47215 * 305.01512 * 4 2 1 31 31 H 1.09002 * 109.47275 * 65.01428 * 4 2 1 32 32 H 1.09004 * 109.47016 * 185.00936 * 4 2 1 33 33 H 1.08006 * 125.52393 * 180.26708 * 7 6 5 34 34 H 1.08999 * 109.47391 * 58.59936 * 10 9 8 35 35 H 1.08999 * 109.46926 * 178.59701 * 10 9 8 36 36 H 0.96997 * 119.99814 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47096 * 204.84089 * 20 11 10 38 38 H 1.08994 * 109.47647 * 324.84786 * 20 11 10 39 39 H 0.96700 * 117.00236 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.8267 -0.1500 2.2093 7 6 3.0263 -1.1025 3.0818 8 7 2.3933 -2.2019 2.6746 9 6 1.7834 -1.9686 1.5409 10 6 0.9593 -2.9590 0.7591 11 7 1.8026 -4.0884 0.3596 12 6 2.0184 -5.1233 1.2300 13 1 1.3569 -5.2681 2.0714 14 6 3.0874 -5.9861 1.0310 15 7 4.0724 -5.6397 0.2296 16 14 3.1279 -7.6390 1.9005 17 1 1.9423 -8.4383 1.4998 18 1 4.3659 -8.3669 1.5224 19 1 3.1078 -7.4259 3.3700 20 6 2.4149 -4.1106 -0.9711 21 6 3.7083 -3.3376 -0.9418 22 8 4.0801 -2.8208 0.0851 23 8 4.4472 -3.2232 -2.0566 24 1 -0.3633 0.5976 0.8360 25 1 -0.3634 0.4253 -0.9356 26 1 -0.3634 -1.0229 0.0995 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6051 -1.7196 -1.2954 31 1 1.7518 -0.1581 -2.1370 32 1 3.1263 -0.7996 -1.2056 33 1 3.6068 -1.0119 3.9881 34 1 0.1392 -3.3196 1.3800 35 1 0.5560 -2.4744 -0.1300 36 1 4.8195 -6.2425 0.0908 37 1 2.6146 -5.1419 -1.2620 38 1 1.7356 -3.6549 -1.6914 39 1 5.2687 -2.7176 -1.9888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609672629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:30 Heat of formation + Delta-G solvation = 32.833146 kcal Electronic energy + Delta-G solvation = -24563.947654 eV Core-core repulsion = 21124.163853 eV Total energy + Delta-G solvation = -3439.783801 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25029 -38.72980 -36.84913 -35.84992 -34.37444 -31.94770 -30.39207 -30.19117 -27.78032 -27.41684 -27.19143 -25.99409 -22.82386 -22.00062 -20.52830 -19.76370 -18.91716 -16.94763 -16.65541 -16.06392 -15.45259 -15.20834 -14.93730 -14.67525 -14.13450 -13.85122 -13.69429 -13.42978 -13.29591 -12.82563 -12.36248 -12.31116 -12.12420 -11.79158 -11.73344 -11.53827 -11.35315 -11.14535 -11.11646 -11.04710 -10.65860 -10.39659 -10.14870 -10.02170 -9.90424 -9.21432 -8.87558 -8.78155 -8.65479 -8.47133 -7.18545 -5.93770 -3.30360 2.54090 3.00253 3.39656 3.44239 3.45611 3.90155 3.99646 4.31274 4.55574 4.64588 4.87112 4.97190 5.06619 5.23001 5.37746 5.39275 5.50639 5.53482 5.63103 5.71444 5.79293 5.86117 5.92707 6.05427 6.17577 6.24972 6.26549 6.38032 6.46172 6.85316 6.96245 7.23053 7.42219 7.71333 7.77431 7.86148 8.11882 8.97075 9.18563 9.43952 9.62895 10.02365 11.17335 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.007545 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.588360 B = 3709.964644 C = 4175.885157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 C -0.136 4.136 4 C -0.166 4.166 5 N -0.374 5.374 6 N -0.346 5.346 7 C 0.189 3.811 8 N -0.515 5.515 9 C 0.290 3.710 10 C 0.203 3.797 11 N -0.544 5.544 12 C -0.239 4.239 13 H 0.085 0.915 14 C 0.005 3.995 15 N -0.908 5.908 16 Si 0.919 3.081 17 H -0.282 1.282 18 H -0.292 1.292 19 H -0.281 1.281 20 C 0.187 3.813 21 C 0.473 3.527 22 O -0.499 6.499 23 O -0.547 6.547 24 H 0.063 0.937 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.198 0.802 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.258 0.742 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 9.387 -5.395 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.096 3.904 3 C -0.194 4.194 4 C -0.224 4.224 5 N -0.167 5.167 6 N -0.175 5.175 7 C -0.114 4.114 8 N -0.241 5.241 9 C 0.011 3.989 10 C 0.073 3.927 11 N -0.262 5.262 12 C -0.368 4.368 13 H 0.103 0.897 14 C -0.193 4.193 15 N -0.552 5.552 16 Si 0.749 3.251 17 H -0.209 1.209 18 H -0.218 1.218 19 H -0.207 1.207 20 C 0.058 3.942 21 C 0.312 3.688 22 O -0.383 6.383 23 O -0.358 6.358 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.215 0.785 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.067 0.933 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -6.628 9.615 -4.957 12.687 hybrid contribution 1.389 -0.453 0.578 1.571 sum -5.239 9.162 -4.379 11.427 Atomic orbital electron populations 1.22379 0.93272 1.03575 1.02964 1.20544 0.93871 0.93424 0.82524 1.21829 1.02321 0.93150 1.02054 1.22483 1.02801 1.01407 0.95733 1.50499 1.38862 1.09363 1.17996 1.77690 1.15509 1.23820 1.00441 1.25619 0.99277 0.87371 0.99158 1.70451 1.14670 1.26320 1.12699 1.26031 0.96572 0.84202 0.92057 1.20112 0.92375 0.85303 0.94953 1.44451 1.53337 1.16377 1.12033 1.19299 1.08895 1.00236 1.08415 0.89703 1.24938 0.94503 1.00426 0.99452 1.69719 1.08815 1.35727 1.40984 0.86094 0.76729 0.82886 0.79427 1.20855 1.21828 1.20744 1.20459 0.86531 1.00940 0.86223 1.25064 0.87178 0.76620 0.79979 1.90598 1.70751 1.45193 1.31756 1.84626 1.36953 1.71892 1.42316 0.91832 0.90509 0.91069 0.91696 0.91591 0.91708 0.91065 0.90871 0.91641 0.78539 0.90051 0.91311 0.93195 0.86333 0.93319 0.76638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.47 37.16 0.31 -1.60 16 2 C 0.18 2.68 1.06 -131.82 -0.14 2.54 16 3 C -0.14 -1.79 8.04 37.16 0.30 -1.49 16 4 C -0.17 -2.43 7.51 37.16 0.28 -2.15 16 5 N -0.37 -7.19 3.47 -45.70 -0.16 -7.35 16 6 N -0.35 -7.18 11.82 29.29 0.35 -6.83 16 7 C 0.19 4.05 13.03 -91.82 -1.20 2.86 16 8 N -0.51 -12.32 11.19 -11.97 -0.13 -12.45 16 9 C 0.29 6.20 5.30 -155.70 -0.83 5.38 16 10 C 0.20 3.98 5.02 -5.19 -0.03 3.95 16 11 N -0.54 -12.52 2.12 -175.99 -0.37 -12.90 16 12 C -0.24 -6.22 9.67 -15.06 -0.15 -6.37 16 13 H 0.09 2.20 7.88 -52.48 -0.41 1.79 16 14 C 0.00 0.13 4.98 -17.43 -0.09 0.04 16 15 N -0.91 -25.28 8.96 55.49 0.50 -24.79 16 16 Si 0.92 21.62 29.59 -169.99 -5.03 16.59 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.19 4.10 4.90 -5.19 -0.03 4.08 16 21 C 0.47 10.86 4.32 36.01 0.16 11.01 16 22 O -0.50 -13.20 14.77 -18.75 -0.28 -13.48 16 23 O -0.55 -10.93 13.42 -39.27 -0.53 -11.46 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.85 5.38 -51.93 -0.28 0.57 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.10 3.23 -51.93 -0.17 0.93 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.15 6.96 -51.93 -0.36 0.79 16 33 H 0.20 3.51 8.06 -52.48 -0.42 3.09 16 34 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 35 H 0.07 1.12 3.60 -51.93 -0.19 0.93 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.12 2.84 6.40 -51.93 -0.33 2.51 16 38 H 0.05 0.88 6.82 -51.93 -0.35 0.53 16 39 H 0.38 6.32 9.10 45.56 0.41 6.73 16 LS Contribution 311.64 15.07 4.70 4.70 Total: -1.00 -34.12 311.64 -6.55 -40.67 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -4.20 Total: 9.04 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -1.40 Total: 18.25 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: 0.18 Total: -64.31 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.80 Total: -24.94 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.12 -6.55 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.506 kcal (2) G-P(sol) polarization free energy of solvation -34.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds