Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47313 * 2 1 4 4 C 1.53006 * 109.46975 * 240.00228 * 2 1 3 5 5 N 1.46500 * 109.47178 * 120.00610 * 2 1 3 6 6 N 1.40447 * 126.82316 * 240.13485 * 5 2 1 7 7 C 1.30707 * 106.79137 * 180.02562 * 6 5 2 8 8 N 1.33238 * 108.95010 * 0.02562 * 7 6 5 9 9 C 1.30833 * 109.82760 * 0.02562 * 8 7 6 10 10 C 1.50700 * 125.95980 * 180.02562 * 9 8 7 11 11 N 1.46501 * 109.47037 * 298.59706 * 10 9 8 12 12 C 1.36932 * 120.00125 * 83.96280 * 11 10 9 13 13 H 1.08005 * 119.99789 * 18.40920 * 12 11 10 14 14 C 1.38807 * 120.00168 * 198.41671 * 12 11 10 15 15 N 1.31624 * 120.00028 * 16.80127 * 14 12 11 16 16 Si 1.86803 * 120.00020 * 196.80724 * 14 12 11 17 17 H 1.48495 * 109.47346 * 59.99973 * 16 14 12 18 18 H 1.48505 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47222 * 299.99475 * 16 14 12 20 20 C 1.46501 * 119.99721 * 263.95561 * 11 10 9 21 21 C 1.50702 * 109.46611 * 84.84866 * 20 11 10 22 22 O 1.20827 * 120.00338 * 359.97438 * 21 20 11 23 23 O 1.34234 * 119.99910 * 179.97438 * 21 20 11 24 24 H 1.08998 * 109.47163 * 305.55687 * 1 2 3 25 25 H 1.09002 * 109.47294 * 65.55546 * 1 2 3 26 26 H 1.09003 * 109.47330 * 185.55359 * 1 2 3 27 27 H 1.09002 * 109.47064 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47538 * 300.00180 * 3 2 1 29 29 H 1.09003 * 109.46870 * 60.00537 * 3 2 1 30 30 H 1.08997 * 109.47215 * 305.01512 * 4 2 1 31 31 H 1.09002 * 109.47275 * 65.01428 * 4 2 1 32 32 H 1.09004 * 109.47016 * 185.00936 * 4 2 1 33 33 H 1.08006 * 125.52393 * 180.26708 * 7 6 5 34 34 H 1.08999 * 109.47391 * 58.59936 * 10 9 8 35 35 H 1.08999 * 109.46926 * 178.59701 * 10 9 8 36 36 H 0.96997 * 119.99814 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47096 * 204.84089 * 20 11 10 38 38 H 1.08994 * 109.47647 * 324.84786 * 20 11 10 39 39 H 0.96700 * 117.00236 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.8267 -0.1500 2.2093 7 6 3.0263 -1.1025 3.0818 8 7 2.3933 -2.2019 2.6746 9 6 1.7834 -1.9686 1.5409 10 6 0.9593 -2.9590 0.7591 11 7 1.8026 -4.0884 0.3596 12 6 2.0184 -5.1233 1.2300 13 1 1.3569 -5.2681 2.0714 14 6 3.0874 -5.9861 1.0310 15 7 4.0724 -5.6397 0.2296 16 14 3.1279 -7.6390 1.9005 17 1 1.9423 -8.4383 1.4998 18 1 4.3659 -8.3669 1.5224 19 1 3.1078 -7.4259 3.3700 20 6 2.4149 -4.1106 -0.9711 21 6 3.7083 -3.3376 -0.9418 22 8 4.0801 -2.8208 0.0851 23 8 4.4472 -3.2232 -2.0566 24 1 -0.3633 0.5976 0.8360 25 1 -0.3634 0.4253 -0.9356 26 1 -0.3634 -1.0229 0.0995 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6051 -1.7196 -1.2954 31 1 1.7518 -0.1581 -2.1370 32 1 3.1263 -0.7996 -1.2056 33 1 3.6068 -1.0119 3.9881 34 1 0.1392 -3.3196 1.3800 35 1 0.5560 -2.4744 -0.1300 36 1 4.8195 -6.2425 0.0908 37 1 2.6146 -5.1419 -1.2620 38 1 1.7356 -3.6549 -1.6914 39 1 5.2687 -2.7176 -1.9888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609672629.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = 9.959716 kcal Electronic energy + Delta-G solvation = -24564.939520 eV Core-core repulsion = 21124.163853 eV Total energy + Delta-G solvation = -3440.775667 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79797 -40.49629 -38.11338 -37.54086 -36.16557 -33.77085 -31.99830 -31.78080 -29.41976 -28.56943 -28.30619 -27.67520 -24.57340 -23.52246 -22.19272 -21.38416 -20.34765 -18.80091 -18.38357 -17.45010 -17.21793 -16.94226 -16.36278 -16.10036 -15.88028 -15.39207 -15.28847 -14.91009 -14.81536 -14.39993 -13.61278 -13.44019 -13.29186 -13.23725 -13.14794 -12.90503 -12.85625 -12.78508 -12.67545 -12.40047 -12.26122 -12.14610 -11.98478 -11.81025 -11.46847 -11.06677 -10.56402 -10.51311 -10.31282 -10.10180 -9.05429 -7.93352 -5.29677 0.97049 1.50955 1.53177 1.58433 1.64918 2.12773 2.33020 2.54144 2.80934 3.30309 3.45813 3.54708 3.68757 3.79716 3.90148 4.03819 4.12261 4.49607 4.55547 4.61709 4.64941 4.73320 4.79044 4.79998 4.83294 4.87464 5.07515 5.16183 5.23675 5.26459 5.28346 5.69055 5.73201 5.83387 6.18663 6.20777 6.32974 7.03102 7.56972 7.64188 7.81558 8.09781 9.14904 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020757 B = 0.007545 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.588360 B = 3709.964644 C = 4175.885157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.163 3.837 3 C -0.129 4.129 4 C -0.160 4.160 5 N -0.365 5.365 6 N -0.353 5.353 7 C 0.171 3.829 8 N -0.562 5.562 9 C 0.282 3.718 10 C 0.202 3.798 11 N -0.554 5.554 12 C -0.237 4.237 13 H 0.079 0.921 14 C -0.045 4.045 15 N -0.930 5.930 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.302 1.302 19 H -0.291 1.291 20 C 0.187 3.813 21 C 0.479 3.521 22 O -0.538 6.538 23 O -0.540 6.540 24 H 0.061 0.939 25 H 0.116 0.884 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.030 0.970 33 H 0.218 0.782 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.246 0.754 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.569 10.586 -7.009 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 C -0.187 4.187 4 C -0.217 4.217 5 N -0.157 5.157 6 N -0.182 5.182 7 C -0.132 4.132 8 N -0.290 5.290 9 C 0.003 3.997 10 C 0.073 3.927 11 N -0.273 5.273 12 C -0.366 4.366 13 H 0.097 0.903 14 C -0.240 4.240 15 N -0.577 5.577 16 Si 0.801 3.199 17 H -0.192 1.192 18 H -0.228 1.228 19 H -0.218 1.218 20 C 0.058 3.942 21 C 0.320 3.680 22 O -0.425 6.425 23 O -0.351 6.351 24 H 0.081 0.919 25 H 0.135 0.865 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.049 0.951 33 H 0.235 0.765 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -8.468 10.839 -6.614 15.262 hybrid contribution 1.924 -0.685 1.014 2.280 sum -6.544 10.154 -5.600 13.315 Atomic orbital electron populations 1.22387 0.90305 1.03772 1.05130 1.21165 0.96135 0.93859 0.80845 1.21811 1.00670 0.92427 1.03744 1.22454 1.00402 1.01624 0.97267 1.50783 1.37520 1.08999 1.18439 1.77604 1.15665 1.24111 1.00843 1.26081 0.99818 0.87050 1.00239 1.70369 1.16169 1.27985 1.14510 1.26042 0.96511 0.85277 0.91855 1.20337 0.91426 0.84419 0.96530 1.44438 1.53534 1.17203 1.12093 1.19433 1.08101 1.01159 1.07955 0.90342 1.25528 0.94676 1.03009 1.00747 1.69883 1.09094 1.36007 1.42725 0.85271 0.76652 0.80244 0.77723 1.19175 1.22840 1.21830 1.20505 0.87050 0.99981 0.86657 1.25202 0.87423 0.75688 0.79683 1.90591 1.71734 1.46947 1.33225 1.84560 1.37647 1.71883 1.41030 0.91941 0.86541 0.91374 0.94209 0.87572 0.92319 0.91939 0.86663 0.95050 0.76540 0.89329 0.87605 0.94450 0.88532 0.88974 0.74911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 8.47 71.98 0.61 -2.43 16 2 C 0.16 4.35 1.06 3.60 0.00 4.35 16 3 C -0.13 -3.04 8.04 71.98 0.58 -2.46 16 4 C -0.16 -4.15 7.51 71.98 0.54 -3.61 16 5 N -0.36 -13.59 3.47 -298.51 -1.04 -14.63 16 6 N -0.35 -14.60 11.82 -61.25 -0.72 -15.32 16 7 C 0.17 7.42 13.03 180.77 2.36 9.77 16 8 N -0.56 -27.16 11.19 -191.78 -2.15 -29.30 16 9 C 0.28 11.86 5.30 138.23 0.73 12.59 16 10 C 0.20 7.61 5.02 85.63 0.43 8.04 16 11 N -0.55 -25.05 2.12 -710.70 -1.51 -26.56 16 12 C -0.24 -12.29 9.67 84.03 0.81 -11.48 16 13 H 0.08 4.09 7.88 -2.91 -0.02 4.07 16 14 C -0.05 -2.43 4.98 84.86 0.42 -2.01 16 15 N -0.93 -52.57 8.96 21.65 0.19 -52.38 16 16 Si 0.97 45.07 29.59 68.60 2.03 47.10 16 17 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 20 C 0.19 7.94 4.90 85.63 0.42 8.36 16 21 C 0.48 21.70 4.32 71.24 0.31 22.00 16 22 O -0.54 -28.58 14.77 21.96 0.32 -28.26 16 23 O -0.54 -20.96 13.42 -51.46 -0.69 -21.65 16 24 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.36 5.38 -2.39 -0.01 1.35 16 27 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.71 3.23 -2.39 -0.01 1.70 16 31 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.03 1.03 6.96 -2.38 -0.02 1.01 16 33 H 0.22 7.90 8.06 -2.91 -0.02 7.87 16 34 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 35 H 0.11 3.11 3.60 -2.39 -0.01 3.11 16 36 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.10 4.59 6.40 -2.39 -0.02 4.58 16 38 H 0.09 3.06 6.82 -2.39 -0.02 3.04 16 39 H 0.39 12.79 9.10 -74.06 -0.67 12.12 16 Total: -1.00 -75.58 311.64 4.08 -71.51 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.42 Total: 26.34 kcal Atomic # 6 Polarization: 35.93 SS G_CDS: 7.21 Total: 43.14 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -5.22 Total: -138.18 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -0.37 Total: -49.91 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -75.58 4.08 -71.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609672629.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.466 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds