Wall clock time and date at job start Tue Mar 31 2020 06:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39667 * 120.00172 * 2 1 4 4 C 1.38938 * 120.07388 * 0.27668 * 3 2 1 5 5 C 1.38081 * 119.92288 * 180.27139 * 4 3 2 6 6 C 1.38311 * 120.07778 * 359.72856 * 5 4 3 7 7 C 1.38260 * 120.14761 * 359.97142 * 6 5 4 8 8 C 1.38131 * 120.07746 * 0.04688 * 7 6 5 9 9 C 1.50704 * 120.03786 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47016 * 260.00018 * 9 8 7 11 11 C 1.38859 * 119.99754 * 180.02562 * 10 9 8 12 12 C 1.39570 * 119.83888 * 180.02562 * 11 10 9 13 13 C 1.36340 * 120.15779 * 180.25511 * 12 11 10 14 14 C 1.40893 * 119.83593 * 359.49782 * 13 12 11 15 15 C 1.41133 * 120.15364 * 180.25652 * 14 13 12 16 16 H 1.07994 * 120.00344 * 24.83920 * 15 14 13 17 17 C 1.39866 * 119.99916 * 204.83980 * 15 14 13 18 18 N 1.30910 * 119.99864 * 17.95871 * 17 15 14 19 19 Si 1.86802 * 120.00165 * 197.96719 * 17 15 14 20 20 H 1.48495 * 109.47078 * 89.99884 * 19 17 15 21 21 H 1.48504 * 109.46830 * 209.99867 * 19 17 15 22 22 H 1.48501 * 109.46885 * 329.99482 * 19 17 15 23 23 C 1.40884 * 119.68717 * 0.47157 * 14 13 12 24 24 C 1.36338 * 119.83581 * 359.78315 * 23 14 13 25 25 H 1.09007 * 109.46937 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46763 * 299.99783 * 1 2 3 27 27 H 1.08996 * 109.47023 * 60.00057 * 1 2 3 28 28 H 0.97006 * 120.00027 * 180.02562 * 2 1 3 29 29 H 1.07996 * 120.03403 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96493 * 179.74080 * 5 4 3 31 31 H 1.07993 * 119.92682 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.96588 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.46422 * 140.00261 * 9 8 7 34 34 H 1.08997 * 109.47019 * 19.99988 * 9 8 7 35 35 H 0.97005 * 120.00187 * 0.02562 * 10 9 8 36 36 H 1.07992 * 119.92182 * 359.96946 * 12 11 10 37 37 H 1.07995 * 120.08393 * 179.74144 * 13 12 11 38 38 H 0.97001 * 120.00040 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.07818 * 179.75449 * 23 14 13 40 40 H 1.08011 * 119.91579 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4703 2.4137 0.0058 5 6 2.1639 3.6077 0.0001 6 6 3.5470 3.6059 -0.0057 7 6 4.2398 2.4094 -0.0052 8 6 3.5523 1.2113 0.0001 9 6 4.3084 -0.0923 0.0000 10 7 4.3407 -0.6380 -1.3591 11 6 4.9861 -1.8419 -1.6088 12 6 5.0153 -2.3585 -2.9050 13 6 5.6426 -3.5426 -3.1565 14 6 6.2716 -4.2396 -2.1059 15 6 6.9276 -5.4631 -2.3597 16 1 7.3038 -5.6792 -3.3487 17 6 7.0905 -6.3959 -1.3303 18 7 6.3545 -6.3146 -0.2508 19 14 8.3586 -7.7576 -1.4958 20 1 9.6574 -7.2941 -0.9451 21 1 7.9010 -8.9540 -0.7445 22 1 8.5251 -8.1073 -2.9294 23 6 6.2386 -3.7117 -0.8002 24 6 5.6030 -2.5292 -0.5624 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9501 -0.8401 -0.0004 29 1 0.3904 2.4157 0.0099 30 1 1.6258 4.5441 0.0004 31 1 4.0869 4.5411 -0.0105 32 1 5.3198 2.4114 -0.0093 33 1 3.8122 -0.8000 0.6641 34 1 5.3274 0.0787 0.3472 35 1 3.9112 -0.1584 -2.0847 36 1 4.5358 -1.8214 -3.7099 37 1 5.6609 -3.9432 -4.1592 38 1 6.4672 -6.9617 0.4630 39 1 6.7152 -4.2427 0.0106 40 1 5.5765 -2.1235 0.4382 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001620733838.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:57 Heat of formation + Delta-G solvation = 34.643982 kcal Electronic energy + Delta-G solvation = -20764.630918 eV Core-core repulsion = 17735.774903 eV Total energy + Delta-G solvation = -3028.856014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71843 -39.59132 -36.72573 -36.31023 -34.90731 -32.52876 -31.34581 -30.59581 -30.11813 -27.33517 -26.65274 -25.52246 -23.20812 -22.42308 -22.21367 -21.45584 -19.14740 -18.47720 -17.86060 -17.16973 -16.82174 -16.51569 -15.84650 -15.56699 -15.12972 -15.10693 -14.80267 -14.56400 -14.44910 -14.35233 -13.98288 -13.62810 -13.47052 -13.30230 -13.02563 -12.88068 -12.75395 -12.60616 -12.28501 -12.10020 -11.71806 -11.56292 -11.19097 -11.07787 -10.99783 -10.30632 -9.73358 -9.40514 -8.54910 -8.29822 -8.16201 -6.00518 0.46882 0.75551 1.10880 1.18752 1.40241 1.52617 1.59212 2.27576 2.61653 2.79326 2.84657 3.24872 3.84979 3.87214 3.99264 4.26883 4.34649 4.44187 4.45564 4.50132 4.60650 4.65794 4.66843 4.81539 4.89928 4.95809 5.03643 5.13974 5.17538 5.27907 5.42646 5.46624 5.65904 5.68703 5.76966 5.80295 5.96546 6.01884 6.19248 6.39438 6.47804 6.67629 6.73188 6.87175 7.08902 7.13117 7.30698 8.48473 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.030961 B = 0.003275 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.144667 B = 8548.175961 C = 8794.850466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.755 5.755 3 C 0.219 3.781 4 C -0.210 4.210 5 C -0.068 4.068 6 C -0.189 4.189 7 C -0.065 4.065 8 C -0.192 4.192 9 C 0.190 3.810 10 N -0.743 5.743 11 C 0.115 3.885 12 C -0.165 4.165 13 C -0.194 4.194 14 C 0.036 3.964 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.032 3.968 18 N -0.841 5.841 19 Si 0.976 3.024 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.261 1.261 23 C -0.142 4.142 24 C -0.174 4.174 25 H 0.081 0.919 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.399 0.601 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.124 0.876 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.392 0.608 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.282 0.718 39 H 0.099 0.901 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 15.994 2.980 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.384 5.384 3 C 0.114 3.886 4 C -0.233 4.233 5 C -0.087 4.087 6 C -0.209 4.209 7 C -0.084 4.084 8 C -0.197 4.197 9 C 0.066 3.934 10 N -0.377 5.377 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.214 4.214 14 C 0.033 3.967 15 C -0.538 4.538 16 H 0.085 0.915 17 C -0.180 4.180 18 N -0.469 5.469 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.195 1.195 22 H -0.185 1.185 23 C -0.162 4.162 24 C -0.196 4.196 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.234 0.766 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.142 0.858 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.226 0.774 36 H 0.131 0.869 37 H 0.114 0.886 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.979 15.884 3.398 19.064 hybrid contribution 0.624 -1.165 -0.227 1.341 sum -9.355 14.719 3.171 17.727 Atomic orbital electron populations 1.21668 0.78946 1.03315 1.01472 1.44808 1.06685 1.05348 1.81532 1.17908 0.90469 0.87188 0.93015 1.20857 1.00351 0.90877 1.11191 1.21240 0.94246 0.97966 0.95230 1.21140 0.94718 0.97932 1.07123 1.21027 0.99963 0.91609 0.95806 1.19396 0.92012 0.94996 1.13318 1.19665 0.98084 0.91064 0.84615 1.44004 1.63268 1.21995 1.08467 1.17437 0.99356 0.88726 0.92910 1.20068 1.05893 0.97963 0.94823 1.20744 1.04267 0.98143 0.98274 1.17801 0.93091 0.93651 0.92158 1.19590 1.35488 1.01485 0.97206 0.91503 1.26599 0.96476 1.00797 0.94096 1.69920 1.33952 1.35349 1.07693 0.85298 0.78576 0.76952 0.79375 1.18993 1.19528 1.18523 1.20857 1.02588 0.95244 0.97524 1.20217 1.04907 0.97374 0.97114 0.90046 0.92138 0.92434 0.76641 0.84723 0.83682 0.84514 0.85772 0.93986 0.93166 0.77371 0.86861 0.88632 0.90791 0.88338 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 9.94 127.77 1.27 2.74 16 2 N -0.76 -17.29 5.80 -360.81 -2.09 -19.38 16 3 C 0.22 5.27 6.63 38.22 0.25 5.53 16 4 C -0.21 -4.23 9.31 22.40 0.21 -4.03 16 5 C -0.07 -1.22 10.04 22.25 0.22 -1.00 16 6 C -0.19 -3.67 10.04 22.29 0.22 -3.44 16 7 C -0.06 -1.51 9.66 22.25 0.22 -1.29 16 8 C -0.19 -4.98 5.27 -19.73 -0.10 -5.08 16 9 C 0.19 5.71 4.31 85.63 0.37 6.08 16 10 N -0.74 -25.02 5.69 -342.71 -1.95 -26.97 16 11 C 0.12 4.91 6.67 38.67 0.26 5.17 16 12 C -0.17 -7.34 9.82 22.15 0.22 -7.12 16 13 C -0.19 -9.83 9.74 22.48 0.22 -9.61 16 14 C 0.04 2.01 5.57 -21.27 -0.12 1.90 16 15 C -0.51 -28.73 9.03 23.38 0.21 -28.52 16 16 H 0.07 3.69 7.91 -2.91 -0.02 3.67 16 17 C 0.03 1.71 5.13 85.22 0.44 2.15 16 18 N -0.84 -46.15 10.96 21.82 0.24 -45.91 16 19 Si 0.98 40.47 29.60 68.60 2.03 42.50 16 20 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 C -0.14 -7.72 8.64 22.47 0.19 -7.53 16 24 C -0.17 -8.20 9.23 22.15 0.20 -8.00 16 25 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.06 0.86 7.94 -2.39 -0.02 0.84 16 27 H 0.06 0.86 7.96 -2.39 -0.02 0.84 16 28 H 0.40 10.38 7.07 -92.70 -0.66 9.73 16 29 H 0.13 2.19 6.73 -2.91 -0.02 2.18 16 30 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 31 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 32 H 0.12 2.70 8.04 -2.91 -0.02 2.68 16 33 H 0.04 1.32 6.89 -2.39 -0.02 1.31 16 34 H 0.05 1.56 7.79 -2.39 -0.02 1.55 16 35 H 0.39 12.33 8.46 -92.70 -0.78 11.55 16 36 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.10 4.60 8.06 -2.91 -0.02 4.58 16 38 H 0.28 14.08 8.30 -92.71 -0.77 13.31 16 39 H 0.10 5.65 6.16 -2.91 -0.02 5.63 16 40 H 0.10 4.43 6.68 -2.90 -0.02 4.41 16 Total: -1.00 -62.26 332.70 2.13 -60.13 By element: Atomic # 1 Polarization: 42.06 SS G_CDS: -0.38 Total: 41.69 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 4.28 Total: -52.05 kcal Atomic # 7 Polarization: -88.46 SS G_CDS: -3.80 Total: -92.26 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -62.26 2.13 -60.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001620733838.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.771 kcal (2) G-P(sol) polarization free energy of solvation -62.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds