Wall clock time and date at job start Tue Mar 31 2020 06:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47602 * 2 1 4 4 C 1.46500 * 119.99962 * 85.06704 * 3 2 1 5 5 C 1.50698 * 109.47045 * 96.02088 * 4 3 2 6 6 H 1.07993 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99554 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99629 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47016 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.47327 * 209.99904 * 9 7 5 12 12 H 1.48495 * 109.47197 * 330.00020 * 9 7 5 13 13 C 1.34776 * 119.99713 * 264.79685 * 3 2 1 14 14 O 1.21590 * 120.00329 * 5.46374 * 13 3 2 15 15 C 1.47521 * 119.99751 * 185.46995 * 13 3 2 16 16 C 1.36599 * 125.77300 * 175.11949 * 15 13 3 17 17 N 1.34811 * 106.84281 * 179.89761 * 16 15 13 18 18 C 1.46500 * 126.59437 * 180.15249 * 17 16 15 19 19 C 1.52999 * 109.46949 * 125.27466 * 18 17 16 20 20 O 1.42904 * 109.46754 * 180.02562 * 19 18 17 21 21 C 1.42904 * 113.99402 * 179.97438 * 20 19 18 22 22 N 1.40210 * 106.80995 * 0.35822 * 17 16 15 23 23 N 1.28761 * 108.36579 * 359.77327 * 22 17 16 24 24 H 1.09000 * 109.46597 * 59.99941 * 1 2 3 25 25 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46965 * 300.00374 * 1 2 3 27 27 H 1.09001 * 109.46965 * 239.99626 * 2 1 3 28 28 H 1.09005 * 109.47021 * 120.00200 * 2 1 3 29 29 H 1.09008 * 109.46632 * 216.02061 * 4 3 2 30 30 H 1.09002 * 109.46738 * 336.01388 * 4 3 2 31 31 H 0.96997 * 119.99877 * 179.97438 * 8 7 5 32 32 H 1.08007 * 126.57733 * 0.04221 * 16 15 13 33 33 H 1.09003 * 109.46684 * 245.26984 * 18 17 16 34 34 H 1.08995 * 109.47170 * 5.27076 * 18 17 16 35 35 H 1.09003 * 109.47034 * 299.99303 * 19 18 17 36 36 H 1.08995 * 109.47503 * 59.99815 * 19 18 17 37 37 H 1.08998 * 109.47539 * 299.99093 * 21 20 19 38 38 H 1.08998 * 109.47663 * 60.00247 * 21 20 19 39 39 H 1.09004 * 109.46568 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1598 2.1081 1.2640 5 6 3.5845 2.0076 1.7447 6 1 4.3118 1.4569 1.1667 7 6 3.9592 2.6178 2.9230 8 7 3.0734 3.2879 3.6271 9 14 5.7250 2.4925 3.5192 10 1 6.5140 3.6252 2.9713 11 1 5.7513 2.5430 5.0031 12 1 6.3137 1.2100 3.0571 13 6 2.3429 1.9811 -1.1624 14 8 2.1373 1.4134 -2.2178 15 6 2.9477 3.3267 -1.1543 16 6 3.4065 4.0025 -2.2491 17 7 3.8753 5.1873 -1.8086 18 6 4.4652 6.2512 -2.6249 19 6 3.7159 7.5613 -2.3740 20 8 4.2910 8.5989 -3.1707 21 6 3.6607 9.8714 -3.0108 22 7 3.6941 5.2034 -0.4183 23 7 3.1457 4.0925 -0.0677 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9009 3.1559 1.1114 30 1 1.4933 1.6740 2.0093 31 1 3.3369 3.7169 4.4562 32 1 3.3939 3.6554 -3.2717 33 1 5.5144 6.3755 -2.3566 34 1 4.3888 5.9850 -3.6791 35 1 2.6668 7.4370 -2.6422 36 1 3.7924 7.8275 -1.3198 37 1 2.6104 9.7947 -3.2921 38 1 3.7360 10.1860 -1.9699 39 1 4.1552 10.6045 -3.6482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626430819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:45 Heat of formation + Delta-G solvation = 31.254588 kcal Electronic energy + Delta-G solvation = -22466.417972 eV Core-core repulsion = 19026.565720 eV Total energy + Delta-G solvation = -3439.852252 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61871 -38.75345 -38.22078 -35.20027 -34.56103 -32.55604 -30.87213 -30.47980 -29.14535 -26.85387 -26.63788 -24.00714 -23.68247 -22.89627 -21.41025 -21.31915 -18.80174 -17.31756 -16.52804 -16.51650 -16.21252 -15.65086 -15.61778 -15.30619 -14.87452 -14.34735 -14.06145 -13.94330 -13.74622 -13.29205 -12.78616 -12.47906 -12.21716 -12.03936 -11.85970 -11.70881 -11.63021 -11.51744 -11.22827 -10.81036 -10.77252 -10.42433 -10.08680 -10.02938 -9.87584 -9.73439 -9.53609 -9.23572 -8.72015 -8.27572 -7.60473 -5.92852 -3.94012 1.60507 2.25879 2.53439 3.36283 3.42410 3.44742 3.55195 3.90810 4.09896 4.44234 4.53411 4.63412 4.83156 4.96276 5.05385 5.06691 5.20500 5.34205 5.36356 5.42231 5.44152 5.49242 5.69175 5.86095 5.87765 5.94624 6.27073 6.31903 6.50825 6.67004 6.70388 6.81673 6.92798 7.55011 7.76533 7.98272 8.33681 8.37601 8.66346 8.99618 9.09706 9.68411 11.15654 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.005641 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.486659 B = 4962.209029 C = 6472.564157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.580 5.580 4 C 0.232 3.768 5 C -0.511 4.511 6 H 0.051 0.949 7 C 0.074 3.926 8 N -0.887 5.887 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.599 3.401 14 O -0.578 6.578 15 C -0.088 4.088 16 C 0.077 3.923 17 N -0.378 5.378 18 C 0.131 3.869 19 C 0.050 3.950 20 O -0.391 6.391 21 C 0.034 3.966 22 N -0.084 5.084 23 N -0.125 5.125 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.260 0.740 32 H 0.196 0.804 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.784 7.071 -12.374 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.309 5.309 4 C 0.112 3.888 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.128 4.128 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.385 3.615 14 O -0.460 6.460 15 C -0.226 4.226 16 C -0.079 4.079 17 N -0.164 5.164 18 C 0.008 3.992 19 C -0.027 4.027 20 O -0.309 6.309 21 C -0.062 4.062 22 N -0.064 5.064 23 N 0.001 4.999 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.213 0.787 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.564 7.697 -11.570 13.908 hybrid contribution 0.864 -0.305 -0.251 0.950 sum 0.300 7.392 -11.821 13.945 Atomic orbital electron populations 1.22107 0.96702 1.01210 1.02116 1.21302 0.93633 0.83421 1.02530 1.48183 1.60868 1.13438 1.08396 1.19809 0.97248 0.93395 0.78354 1.21226 0.94814 1.32725 1.06294 0.93054 1.24738 0.96700 0.94942 0.96468 1.69908 1.33506 1.34051 1.15102 0.86705 0.85862 0.78292 0.77755 1.20808 1.21267 1.20176 1.16802 0.77661 0.83129 0.83891 1.90677 1.57998 1.66038 1.31269 1.21477 1.12474 0.99537 0.89137 1.23157 0.97217 0.86365 1.01163 1.50367 1.43994 1.13024 1.09043 1.21475 0.98427 0.84545 0.94723 1.22657 0.96656 0.87003 0.96414 1.87761 1.58636 1.18375 1.66154 1.22774 0.97527 0.84442 1.01501 1.82174 1.20478 1.17133 0.86589 1.75405 1.05180 0.97041 1.22246 0.92814 0.92404 0.92391 0.90884 0.90463 0.91662 0.95098 0.93000 0.78700 0.88022 0.87499 0.92417 0.91088 0.93826 0.93584 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 10.24 37.16 0.38 -2.25 16 2 C 0.11 2.15 6.12 -4.04 -0.02 2.12 16 3 N -0.58 -12.92 2.47 -176.29 -0.44 -13.36 16 4 C 0.23 5.84 4.78 -5.19 -0.02 5.82 16 5 C -0.51 -13.99 7.91 -34.44 -0.27 -14.27 16 6 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 7 C 0.07 2.06 5.46 -17.82 -0.10 1.97 16 8 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.60 13.20 7.61 -12.48 -0.09 13.10 16 14 O -0.58 -12.88 16.42 5.29 0.09 -12.79 16 15 C -0.09 -1.84 6.61 -83.55 -0.55 -2.39 16 16 C 0.08 1.24 11.28 -16.84 -0.19 1.05 16 17 N -0.38 -5.87 3.69 -61.06 -0.23 -6.10 16 18 C 0.13 1.41 6.91 -4.04 -0.03 1.38 16 19 C 0.05 0.54 6.14 37.16 0.23 0.77 16 20 O -0.39 -4.06 10.70 -35.23 -0.38 -4.44 16 21 C 0.03 0.26 11.01 101.05 1.11 1.37 16 22 N -0.08 -1.72 13.65 60.35 0.82 -0.89 16 23 N -0.13 -2.90 7.87 32.85 0.26 -2.64 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.34 7.35 -51.93 -0.38 0.96 16 28 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 29 H 0.07 1.76 5.64 -51.92 -0.29 1.47 16 30 H 0.03 0.81 8.03 -51.93 -0.42 0.39 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.20 2.38 8.06 -52.48 -0.42 1.96 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 337.68 15.07 5.09 5.09 Total: -1.00 -33.12 337.68 -4.33 -37.45 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -5.70 Total: -3.02 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 0.44 Total: 8.68 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 1.16 Total: -47.88 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.29 Total: -17.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.12 -4.33 -37.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626430819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.705 kcal (2) G-P(sol) polarization free energy of solvation -33.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds