Wall clock time and date at job start Tue Mar 31 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47602 * 2 1 4 4 C 1.46500 * 119.99962 * 85.06704 * 3 2 1 5 5 C 1.50698 * 109.47045 * 96.02088 * 4 3 2 6 6 H 1.07993 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99554 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99629 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47016 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.47327 * 209.99904 * 9 7 5 12 12 H 1.48495 * 109.47197 * 330.00020 * 9 7 5 13 13 C 1.34776 * 119.99713 * 264.79685 * 3 2 1 14 14 O 1.21590 * 120.00329 * 5.46374 * 13 3 2 15 15 C 1.47521 * 119.99751 * 185.46995 * 13 3 2 16 16 C 1.36599 * 125.77300 * 175.11949 * 15 13 3 17 17 N 1.34811 * 106.84281 * 179.89761 * 16 15 13 18 18 C 1.46500 * 126.59437 * 180.15249 * 17 16 15 19 19 C 1.52999 * 109.46949 * 125.27466 * 18 17 16 20 20 O 1.42904 * 109.46754 * 180.02562 * 19 18 17 21 21 C 1.42904 * 113.99402 * 179.97438 * 20 19 18 22 22 N 1.40210 * 106.80995 * 0.35822 * 17 16 15 23 23 N 1.28761 * 108.36579 * 359.77327 * 22 17 16 24 24 H 1.09000 * 109.46597 * 59.99941 * 1 2 3 25 25 H 1.08997 * 109.47457 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46965 * 300.00374 * 1 2 3 27 27 H 1.09001 * 109.46965 * 239.99626 * 2 1 3 28 28 H 1.09005 * 109.47021 * 120.00200 * 2 1 3 29 29 H 1.09008 * 109.46632 * 216.02061 * 4 3 2 30 30 H 1.09002 * 109.46738 * 336.01388 * 4 3 2 31 31 H 0.96997 * 119.99877 * 179.97438 * 8 7 5 32 32 H 1.08007 * 126.57733 * 0.04221 * 16 15 13 33 33 H 1.09003 * 109.46684 * 245.26984 * 18 17 16 34 34 H 1.08995 * 109.47170 * 5.27076 * 18 17 16 35 35 H 1.09003 * 109.47034 * 299.99303 * 19 18 17 36 36 H 1.08995 * 109.47503 * 59.99815 * 19 18 17 37 37 H 1.08998 * 109.47539 * 299.99093 * 21 20 19 38 38 H 1.08998 * 109.47663 * 60.00247 * 21 20 19 39 39 H 1.09004 * 109.46568 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1598 2.1081 1.2640 5 6 3.5845 2.0076 1.7447 6 1 4.3118 1.4569 1.1667 7 6 3.9592 2.6178 2.9230 8 7 3.0734 3.2879 3.6271 9 14 5.7250 2.4925 3.5192 10 1 6.5140 3.6252 2.9713 11 1 5.7513 2.5430 5.0031 12 1 6.3137 1.2100 3.0571 13 6 2.3429 1.9811 -1.1624 14 8 2.1373 1.4134 -2.2178 15 6 2.9477 3.3267 -1.1543 16 6 3.4065 4.0025 -2.2491 17 7 3.8753 5.1873 -1.8086 18 6 4.4652 6.2512 -2.6249 19 6 3.7159 7.5613 -2.3740 20 8 4.2910 8.5989 -3.1707 21 6 3.6607 9.8714 -3.0108 22 7 3.6941 5.2034 -0.4183 23 7 3.1457 4.0925 -0.0677 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.9009 3.1559 1.1114 30 1 1.4933 1.6740 2.0093 31 1 3.3369 3.7169 4.4562 32 1 3.3939 3.6554 -3.2717 33 1 5.5144 6.3755 -2.3566 34 1 4.3888 5.9850 -3.6791 35 1 2.6668 7.4370 -2.6422 36 1 3.7924 7.8275 -1.3198 37 1 2.6104 9.7947 -3.2921 38 1 3.7360 10.1860 -1.9699 39 1 4.1552 10.6045 -3.6482 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626430819.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:44 Heat of formation + Delta-G solvation = 8.143707 kcal Electronic energy + Delta-G solvation = -22467.420135 eV Core-core repulsion = 19026.565720 eV Total energy + Delta-G solvation = -3440.854415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.05175 -40.39517 -39.03761 -36.93024 -35.76790 -34.58079 -32.42809 -31.73485 -30.43419 -28.82642 -27.38223 -25.25805 -25.07341 -24.78282 -22.88188 -22.59107 -20.32387 -18.75083 -18.28074 -17.61769 -17.41052 -17.26368 -16.75322 -16.60552 -16.24776 -15.98261 -15.51167 -15.31456 -14.98006 -14.52272 -14.36936 -14.18396 -13.60133 -13.43178 -13.23994 -13.11412 -13.00813 -12.75871 -12.63753 -12.48685 -12.32066 -12.11398 -11.78861 -11.63605 -11.37670 -11.21308 -10.94727 -10.78579 -10.40762 -10.18227 -9.38687 -8.05461 -6.12464 0.27686 0.92197 1.12872 1.38511 1.40583 1.48306 2.28068 2.46342 2.50519 2.72078 3.28198 3.41275 3.59506 3.79568 3.82222 4.10568 4.14578 4.23837 4.28015 4.44237 4.45329 4.50586 4.59283 4.60949 4.66122 4.82609 4.86945 4.88040 5.05773 5.13867 5.32990 5.51043 5.56536 5.83281 5.93756 5.99476 6.24424 6.56570 6.91407 7.15557 7.37987 7.53835 9.02242 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.013283 B = 0.005641 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.486659 B = 4962.209029 C = 6472.564157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 N -0.590 5.590 4 C 0.251 3.749 5 C -0.510 4.510 6 H 0.038 0.962 7 C 0.032 3.968 8 N -0.915 5.915 9 Si 0.939 3.061 10 H -0.286 1.286 11 H -0.279 1.279 12 H -0.271 1.271 13 C 0.596 3.404 14 O -0.584 6.584 15 C -0.129 4.129 16 C 0.110 3.890 17 N -0.359 5.359 18 C 0.123 3.877 19 C 0.056 3.944 20 O -0.399 6.399 21 C 0.026 3.974 22 N -0.115 5.115 23 N -0.171 5.171 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.049 0.951 30 H 0.015 0.985 31 H 0.261 0.739 32 H 0.242 0.758 33 H 0.111 0.889 34 H 0.149 0.851 35 H 0.061 0.939 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 7.243 -14.372 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.319 5.319 4 C 0.130 3.870 5 C -0.549 4.549 6 H 0.056 0.944 7 C -0.168 4.168 8 N -0.555 5.555 9 Si 0.766 3.234 10 H -0.213 1.213 11 H -0.204 1.204 12 H -0.196 1.196 13 C 0.383 3.617 14 O -0.467 6.467 15 C -0.268 4.268 16 C -0.048 4.048 17 N -0.144 5.144 18 C 0.003 3.997 19 C -0.022 4.022 20 O -0.318 6.318 21 C -0.070 4.070 22 N -0.095 5.095 23 N -0.043 5.043 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.258 0.742 33 H 0.129 0.871 34 H 0.167 0.833 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.160 7.885 -13.567 15.693 hybrid contribution 0.658 -0.265 0.206 0.739 sum 0.818 7.619 -13.361 15.402 Atomic orbital electron populations 1.22014 0.94580 1.03153 1.01280 1.21517 0.95415 0.81826 1.02709 1.48194 1.61506 1.14559 1.07591 1.19342 0.95739 0.92738 0.79170 1.21302 0.95449 1.32096 1.06060 0.94388 1.25349 0.99876 0.94788 0.96739 1.70001 1.35060 1.34986 1.15500 0.85860 0.81871 0.78067 0.77608 1.21275 1.20389 1.19609 1.17014 0.77361 0.83686 0.83619 1.90650 1.58482 1.66496 1.31035 1.21652 1.14947 0.99780 0.90432 1.23733 0.94021 0.85274 1.01736 1.50596 1.42193 1.13735 1.07893 1.21938 0.98424 0.83356 0.96012 1.22501 0.96866 0.87317 0.95479 1.87740 1.59104 1.19074 1.65866 1.22989 0.98255 0.83678 1.02041 1.82050 1.21426 1.16700 0.89294 1.75358 1.06605 0.98185 1.24180 0.93422 0.89056 0.93337 0.90338 0.90551 0.93316 0.96729 0.92988 0.74196 0.87122 0.83341 0.92123 0.93067 0.92989 0.93694 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 10.24 71.98 0.74 -4.04 16 2 C 0.11 4.01 6.12 86.38 0.53 4.54 16 3 N -0.59 -26.56 2.47 -829.92 -2.05 -28.62 16 4 C 0.25 13.04 4.78 85.63 0.41 13.45 16 5 C -0.51 -28.45 7.91 25.60 0.20 -28.25 16 6 H 0.04 2.18 7.81 -2.91 -0.02 2.16 16 7 C 0.03 1.82 5.46 84.66 0.46 2.28 16 8 N -0.92 -53.96 13.29 21.45 0.28 -53.68 16 9 Si 0.94 45.33 29.54 68.60 2.03 47.35 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.60 26.14 7.61 86.69 0.66 26.80 16 14 O -0.58 -25.32 16.42 -4.00 -0.07 -25.38 16 15 C -0.13 -5.32 6.61 40.82 0.27 -5.05 16 16 C 0.11 3.29 11.28 83.85 0.95 4.23 16 17 N -0.36 -10.47 3.69 -347.10 -1.28 -11.75 16 18 C 0.12 2.29 6.91 86.38 0.60 2.89 16 19 C 0.06 1.11 6.14 71.98 0.44 1.56 16 20 O -0.40 -7.41 10.70 -148.98 -1.59 -9.01 16 21 C 0.03 0.35 11.01 113.37 1.25 1.60 16 22 N -0.11 -4.72 13.65 37.02 0.51 -4.21 16 23 N -0.17 -8.03 7.87 -49.99 -0.39 -8.42 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 2.82 7.35 -2.39 -0.02 2.80 16 28 H 0.08 2.81 8.11 -2.38 -0.02 2.79 16 29 H 0.05 2.74 5.64 -2.38 -0.01 2.73 16 30 H 0.01 0.80 8.03 -2.39 -0.02 0.78 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.24 4.77 8.06 -2.91 -0.02 4.74 16 33 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.15 1.62 8.08 -2.39 -0.02 1.61 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 37 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -72.88 337.68 4.97 -67.91 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 1.04 Total: 5.78 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 6.50 Total: 20.02 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -2.94 Total: -106.67 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -1.66 Total: -34.39 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -72.88 4.97 -67.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626430819.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.057 kcal (2) G-P(sol) polarization free energy of solvation -72.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds