Wall clock time and date at job start Tue Mar 31 2020 07:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28940 * 126.47892 * 2 1 4 4 N 1.28575 * 109.62377 * 179.97438 * 3 2 1 5 5 C 1.33362 * 109.89321 * 359.97438 * 4 3 2 6 6 N 1.39916 * 126.24991 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00035 * 359.96947 * 6 5 4 8 8 O 1.21592 * 119.99757 * 359.97438 * 7 6 5 9 9 N 1.34770 * 120.00081 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00093 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47276 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47005 * 300.00213 * 11 10 9 13 13 C 1.53000 * 109.47331 * 59.99770 * 11 10 9 14 14 C 1.53000 * 109.47262 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.46885 * 179.97438 * 14 11 10 16 16 H 1.07997 * 120.00705 * 359.97438 * 15 14 11 17 17 C 1.37887 * 119.99778 * 179.97438 * 15 14 11 18 18 N 1.31505 * 119.99907 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47596 * 90.00295 * 19 17 15 21 21 H 1.48506 * 109.47100 * 209.99782 * 19 17 15 22 22 H 1.48501 * 109.47544 * 329.99692 * 19 17 15 23 23 N 1.31648 * 107.49666 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.46973 * 270.03630 * 1 2 3 25 25 H 1.08998 * 109.47143 * 30.03179 * 1 2 3 26 26 H 1.09000 * 109.47250 * 150.03936 * 1 2 3 27 27 H 0.96991 * 119.99941 * 179.97438 * 6 5 4 28 28 H 0.96999 * 120.00276 * 0.02562 * 9 7 6 29 29 H 1.08997 * 109.47201 * 300.00149 * 10 9 7 30 30 H 1.08997 * 109.47436 * 60.00255 * 10 9 7 31 31 H 1.08997 * 109.47113 * 59.99746 * 12 11 10 32 32 H 1.09005 * 109.47302 * 180.02562 * 12 11 10 33 33 H 1.09001 * 109.47384 * 299.99908 * 12 11 10 34 34 H 1.09009 * 109.46961 * 59.99915 * 13 11 10 35 35 H 1.08996 * 109.47479 * 179.97438 * 13 11 10 36 36 H 1.08997 * 109.47176 * 300.00493 * 13 11 10 37 37 H 1.08997 * 109.47017 * 299.99682 * 14 11 10 38 38 H 1.08993 * 109.47161 * 59.99886 * 14 11 10 39 39 H 0.97001 * 120.00033 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2316 1.0368 0.0000 4 7 3.4621 0.6640 0.0005 5 6 3.5328 -0.6678 0.0015 6 7 4.7034 -1.4341 0.0028 7 6 5.9065 -0.8267 0.0026 8 8 5.9746 0.3873 0.0008 9 7 7.0341 -1.5649 0.0044 10 6 8.3419 -0.9046 0.0036 11 6 9.4473 -1.9624 0.0053 12 6 9.3168 -2.8343 1.2558 13 6 9.3173 -2.8381 -1.2426 14 6 10.8131 -1.2729 0.0051 15 6 11.9018 -2.3149 0.0074 16 1 11.6453 -3.3639 0.0093 17 6 13.2255 -1.9288 0.0072 18 7 13.5379 -0.6514 0.0043 19 14 14.5750 -3.2204 0.0093 20 1 14.9330 -3.5647 -1.3902 21 1 15.7709 -2.6856 0.7088 22 1 14.0942 -4.4376 0.7111 23 7 2.2999 -1.1296 0.0010 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3634 -0.8903 -0.5132 27 1 4.6490 -2.4025 0.0038 28 1 6.9798 -2.5334 0.0054 29 1 8.4349 -0.2839 -0.8875 30 1 8.4344 -0.2806 0.8924 31 1 8.3438 -3.3255 1.2564 32 1 10.1047 -3.5877 1.2573 33 1 9.4095 -2.2106 2.1449 34 1 9.4101 -2.2169 -2.1336 35 1 10.1050 -3.5914 -1.2417 36 1 8.3443 -3.3293 -1.2421 37 1 10.9062 -0.6516 -0.8856 38 1 10.9054 -0.6494 0.8943 39 1 14.4691 -0.3798 0.0038 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627301291.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:28 Heat of formation + Delta-G solvation = 103.784653 kcal Electronic energy + Delta-G solvation = -21729.447442 eV Core-core repulsion = 18325.033080 eV Total energy + Delta-G solvation = -3404.414362 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.27383 -40.16649 -37.43131 -35.58643 -34.24483 -33.63816 -32.34828 -31.82943 -28.52550 -27.14287 -26.53414 -26.28779 -23.69609 -23.32768 -22.48552 -20.80889 -18.98973 -18.31453 -17.70310 -17.20237 -16.70158 -16.26748 -15.54980 -15.06654 -14.45640 -14.32766 -14.13723 -13.97936 -13.63315 -13.57194 -13.11275 -12.78130 -12.35255 -12.07046 -12.06687 -11.69964 -11.16403 -11.02600 -10.95432 -10.85663 -10.65508 -10.62342 -10.42764 -10.26878 -10.17355 -9.89813 -9.34182 -9.23521 -8.94350 -8.76979 -8.36130 -6.00051 -4.01459 0.79051 1.30570 2.11878 2.31414 3.29264 3.30896 3.38128 3.39489 3.82507 3.90847 4.44963 4.54549 4.58260 4.82372 4.84054 5.31370 5.35443 5.43981 5.60570 5.71658 5.92591 6.09394 6.14296 6.15625 6.21212 6.37322 6.48682 6.60414 6.61019 6.72960 7.03604 7.05999 7.10445 7.63771 7.75689 7.76756 7.98441 8.21061 8.39387 8.49714 9.03256 9.61630 11.11359 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.059723 B = 0.002746 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.722298 B =10192.695831 C =10459.753940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.208 5.208 3 N 0.007 4.993 4 N -0.279 5.279 5 C 0.448 3.552 6 N -0.634 5.634 7 C 0.698 3.302 8 O -0.534 6.534 9 N -0.724 5.724 10 C 0.145 3.855 11 C -0.072 4.072 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.036 3.964 15 C -0.511 4.511 16 H 0.059 0.941 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.889 3.111 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 N -0.337 5.337 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.422 0.578 28 H 0.397 0.603 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.799 -4.193 -0.058 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.122 5.122 3 N 0.012 4.988 4 N -0.159 5.159 5 C 0.075 3.925 6 N -0.293 5.293 7 C 0.396 3.604 8 O -0.404 6.404 9 N -0.380 5.380 10 C 0.023 3.977 11 C -0.072 4.072 12 C -0.185 4.185 13 C -0.185 4.185 14 C -0.002 4.002 15 C -0.550 4.550 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.200 1.200 23 N -0.188 5.188 24 H 0.113 0.887 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.260 0.740 28 H 0.232 0.768 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -24.850 -2.476 -0.056 24.973 hybrid contribution 0.920 -2.134 0.008 2.323 sum -23.930 -4.609 -0.048 24.370 Atomic orbital electron populations 1.22240 0.69714 1.06240 1.05290 1.53153 1.09639 1.00309 1.49125 1.78540 0.95853 1.15015 1.09426 1.75788 1.08293 1.09390 1.22436 1.21171 0.86464 0.88449 0.96389 1.41720 1.00631 1.09431 1.77483 1.15892 0.79559 0.85972 0.78985 1.91096 1.84704 1.10820 1.53820 1.45334 1.04707 1.09722 1.78253 1.21648 0.78335 0.95447 1.02295 1.20932 0.96429 0.94733 0.95153 1.21773 0.99423 0.99982 0.97313 1.21771 0.99426 0.99959 0.97331 1.19098 0.87874 0.95560 0.97662 1.21166 0.90527 0.92880 1.50397 0.92254 1.25016 0.98859 0.95084 0.95564 1.69959 1.18014 1.14569 1.50734 0.86647 0.81810 0.81818 0.78008 1.20792 1.21355 1.19970 1.78815 0.99152 1.07912 1.32918 0.88700 0.87324 0.87612 0.74047 0.76771 0.91450 0.91439 0.95301 0.91365 0.93248 0.93248 0.91374 0.95293 0.96203 0.96196 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.38 11.78 59.85 0.70 1.09 16 2 N -0.21 -2.13 4.75 -16.63 -0.08 -2.20 16 3 N 0.01 0.10 13.24 60.35 0.80 0.90 16 4 N -0.28 -4.60 10.55 30.07 0.32 -4.28 16 5 C 0.45 6.34 8.97 -320.53 -2.88 3.46 16 6 N -0.63 -7.81 5.44 -17.17 -0.09 -7.90 16 7 C 0.70 10.79 8.53 -86.92 -0.74 10.05 16 8 O -0.53 -10.72 15.07 5.28 0.08 -10.64 16 9 N -0.72 -10.04 4.96 -65.23 -0.32 -10.36 16 10 C 0.15 2.49 4.56 -4.04 -0.02 2.47 16 11 C -0.07 -1.31 0.54 -154.51 -0.08 -1.39 16 12 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 13 C -0.13 -2.14 8.05 37.16 0.30 -1.84 16 14 C 0.04 0.85 4.04 -27.88 -0.11 0.74 16 15 C -0.51 -13.34 7.65 -34.44 -0.26 -13.60 16 16 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 18 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 N -0.34 -4.02 12.79 30.08 0.38 -3.64 16 24 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.11 0.20 8.14 -51.93 -0.42 -0.23 16 27 H 0.42 3.48 8.84 -40.82 -0.36 3.12 16 28 H 0.40 4.36 6.18 -40.82 -0.25 4.11 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 32 H 0.07 1.24 6.61 -51.93 -0.34 0.90 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.07 1.23 6.62 -51.93 -0.34 0.89 16 36 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -35.10 327.80 -6.40 -41.50 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.25 Total: 0.57 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -2.89 Total: 0.59 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 1.74 Total: -52.96 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.08 Total: -10.64 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.10 -6.40 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627301291.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.288 kcal (2) G-P(sol) polarization free energy of solvation -35.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds