Wall clock time and date at job start Tue Mar 31 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 H 1.09006 * 109.47068 * 304.33800 * 3 2 1 5 5 C 1.50702 * 109.47403 * 184.33610 * 3 2 1 6 6 H 1.08003 * 119.99771 * 240.00738 * 5 3 2 7 7 C 1.37871 * 119.99836 * 59.99707 * 5 3 2 8 8 N 1.31516 * 120.00255 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99923 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47500 * 90.00008 * 9 7 5 11 11 H 1.48497 * 109.46972 * 210.00318 * 9 7 5 12 12 H 1.48502 * 109.46909 * 329.99991 * 9 7 5 13 13 N 1.46899 * 109.47258 * 64.33302 * 3 2 1 14 14 C 1.46895 * 111.00415 * 205.79928 * 13 3 2 15 15 C 1.50699 * 109.47503 * 174.88413 * 14 13 3 16 16 N 1.31132 * 126.54777 * 89.99869 * 15 14 13 17 17 C 1.34499 * 105.61371 * 180.02562 * 16 15 14 18 18 C 1.50694 * 126.28884 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47260 * 90.00294 * 18 17 16 20 20 O 1.21277 * 120.00167 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00150 * 180.02562 * 19 18 17 22 22 C 1.46497 * 120.00247 * 179.97438 * 21 19 18 23 23 N 1.29951 * 107.42386 * 0.02562 * 17 16 15 24 24 O 1.21301 * 110.25063 * 359.70469 * 23 17 16 25 25 H 1.08996 * 109.47169 * 174.10097 * 1 2 3 26 26 H 1.09001 * 109.47270 * 294.09836 * 1 2 3 27 27 H 1.08998 * 109.46890 * 54.10009 * 1 2 3 28 28 H 1.08999 * 109.47132 * 240.00332 * 2 1 3 29 29 H 1.09003 * 109.47008 * 119.99889 * 2 1 3 30 30 H 0.96998 * 119.99861 * 180.02562 * 8 7 5 31 31 H 1.00906 * 111.00050 * 81.84362 * 13 3 2 32 32 H 1.09000 * 109.47394 * 294.88629 * 14 13 3 33 33 H 1.08996 * 109.47110 * 54.88116 * 14 13 3 34 34 H 1.09003 * 109.47332 * 210.00177 * 18 17 16 35 35 H 1.09000 * 109.47452 * 329.99701 * 18 17 16 36 36 H 0.97004 * 119.99984 * 359.97438 * 21 19 18 37 37 H 1.09000 * 109.47259 * 59.98908 * 22 21 19 38 38 H 1.09000 * 109.47331 * 179.97438 * 22 21 19 39 39 H 1.09003 * 109.46868 * 299.99786 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6146 1.9783 -0.8486 5 6 3.5432 1.4439 -0.1074 6 1 4.1399 1.8914 0.6737 7 6 4.1565 0.8738 -1.2027 8 7 3.4298 0.3291 -2.1539 9 14 6.0198 0.8749 -1.3355 10 1 6.5620 -0.3547 -0.7034 11 1 6.4140 0.9108 -2.7668 12 1 6.5648 2.0696 -0.6419 13 7 1.6377 2.1041 1.2483 14 6 1.5424 3.5586 1.0663 15 6 1.0081 4.1888 2.3266 16 7 1.7145 4.6250 3.3416 17 6 0.8205 5.0998 4.2274 18 6 1.1328 5.7148 5.5672 19 6 1.3162 7.2020 5.4068 20 8 1.2048 7.7121 4.3122 21 7 1.6050 7.9650 6.4796 22 6 1.7839 9.4106 6.3236 23 7 -0.3619 4.9306 3.7155 24 8 -0.2758 4.4138 2.6215 25 1 -0.3633 -1.0222 -0.1056 26 1 -0.3634 0.4196 0.9381 27 1 -0.3633 0.6026 -0.8324 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8614 -0.0724 -2.9243 31 1 2.2708 1.8745 1.9997 32 1 2.5309 3.9632 0.8486 33 1 0.8697 3.7777 0.2371 34 1 0.3101 5.5224 6.2559 35 1 2.0486 5.2764 5.9637 36 1 1.6945 7.5569 7.3551 37 1 0.8682 9.8493 5.9272 38 1 2.0096 9.8555 7.2927 39 1 2.6065 9.6026 5.6348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653819463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:56 Heat of formation + Delta-G solvation = 26.055706 kcal Electronic energy + Delta-G solvation = -21734.624146 eV Core-core repulsion = 18294.546454 eV Total energy + Delta-G solvation = -3440.077693 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.26777 -39.89350 -36.57308 -35.71507 -34.88419 -33.61720 -32.05300 -31.05865 -30.15197 -27.23025 -26.73465 -25.09357 -23.34749 -22.57315 -21.54724 -20.59604 -19.61833 -18.11106 -17.45508 -17.10509 -16.68355 -16.22521 -15.77719 -14.93727 -14.75288 -14.19708 -14.03916 -13.96633 -13.66254 -13.56937 -12.80382 -12.62558 -12.49239 -12.37474 -11.95832 -11.83510 -11.40696 -11.28105 -11.18343 -10.95977 -10.76838 -10.68917 -10.31960 -10.20416 -9.81875 -9.66334 -9.50105 -9.49947 -9.17021 -8.44470 -7.52844 -6.06693 -4.19791 1.43183 2.32303 2.33456 2.96009 3.17873 3.25695 3.33190 3.36353 3.72161 4.16216 4.36228 4.46583 4.84259 4.93308 4.98509 5.16870 5.19163 5.36600 5.44343 5.47393 5.75974 5.99132 6.00220 6.15966 6.25435 6.37539 6.47690 6.67155 7.01503 7.06777 7.13820 7.30129 7.48185 7.71204 7.88281 7.91032 8.00513 8.16001 8.42118 8.47573 8.89717 9.48707 10.94266 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.003537 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.412498 B = 7914.053179 C = 8889.213161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.039 0.961 5 C -0.552 4.552 6 H 0.057 0.943 7 C 0.070 3.930 8 N -0.883 5.883 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.682 5.682 14 C 0.151 3.849 15 C 0.215 3.785 16 N -0.481 5.481 17 C 0.178 3.822 18 C -0.046 4.046 19 C 0.519 3.481 20 O -0.523 6.523 21 N -0.736 5.736 22 C 0.088 3.912 23 N -0.383 5.383 24 O 0.083 5.917 25 H 0.026 0.974 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.093 0.907 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.337 0.663 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.403 0.597 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 11.011 16.176 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.133 4.133 8 N -0.521 5.521 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.314 5.314 14 C 0.019 3.981 15 C -0.006 4.006 16 N -0.215 5.215 17 C -0.096 4.096 18 C -0.087 4.087 19 C 0.303 3.697 20 O -0.398 6.398 21 N -0.389 5.389 22 C -0.056 4.056 23 N -0.091 5.091 24 O 0.025 5.975 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.099 0.901 33 H 0.119 0.881 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.199 11.530 15.699 20.160 hybrid contribution 2.119 -0.010 0.202 2.129 sum -3.080 11.520 15.901 19.875 Atomic orbital electron populations 1.21708 0.98798 0.98525 1.00498 1.21507 0.92228 0.98723 1.01970 1.19236 0.93150 0.91355 0.85205 0.94319 1.21840 0.92378 1.38740 1.06139 0.92502 1.24909 0.98145 0.94756 0.95512 1.69869 1.35036 1.37683 1.09501 0.86620 0.85798 0.78498 0.77255 1.20614 1.21171 1.19936 1.60960 1.56232 1.03007 1.11201 1.20399 1.00400 0.91000 0.86293 1.29204 0.79360 0.93893 0.98114 1.71859 1.31543 1.16368 1.01752 1.24685 0.85115 1.00960 0.98818 1.19787 1.06007 0.91846 0.91102 1.20304 0.76420 0.88503 0.84474 1.90772 1.48914 1.74560 1.25565 1.45690 1.73580 1.08872 1.10789 1.21547 1.02153 0.79656 1.02239 1.74527 1.23179 1.15670 0.95746 1.85277 1.30618 1.55903 1.25750 0.95526 0.93499 0.94206 0.88839 0.94915 0.92726 0.84608 0.90062 0.88064 0.86195 0.85603 0.76289 0.92179 0.90490 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.72 37.16 0.36 -2.37 16 2 C -0.11 -2.41 5.45 -26.73 -0.15 -2.56 16 3 C 0.22 5.05 1.98 -68.86 -0.14 4.91 16 4 H 0.04 0.97 7.71 -51.93 -0.40 0.57 16 5 C -0.55 -14.15 8.47 -34.44 -0.29 -14.44 16 6 H 0.06 1.46 7.73 -52.48 -0.41 1.05 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.01 11.30 55.43 0.63 -23.38 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.56 5.74 -109.22 -0.63 -14.19 16 14 C 0.15 2.70 6.13 -4.98 -0.03 2.67 16 15 C 0.22 3.81 8.07 -13.06 -0.11 3.71 16 16 N -0.48 -8.59 11.55 -9.86 -0.11 -8.70 16 17 C 0.18 2.85 6.71 -156.37 -1.05 1.80 16 18 C -0.05 -0.49 6.33 -29.04 -0.18 -0.67 16 19 C 0.52 6.21 7.82 -10.99 -0.09 6.12 16 20 O -0.52 -9.03 16.03 5.56 0.09 -8.94 16 21 N -0.74 -5.53 5.71 -67.08 -0.38 -5.91 16 22 C 0.09 0.60 10.70 59.85 0.64 1.24 16 23 N -0.38 -6.64 12.16 30.90 0.38 -6.27 16 24 O 0.08 1.48 11.31 18.10 0.20 1.69 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.89 7.90 -51.93 -0.41 0.48 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.34 6.79 8.45 -39.29 -0.33 6.46 16 32 H 0.08 1.52 8.11 -51.93 -0.42 1.10 16 33 H 0.10 1.69 7.93 -51.93 -0.41 1.28 16 34 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.13 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 1.48 8.83 -40.82 -0.36 1.12 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 337.40 15.07 5.08 5.08 Total: -1.00 -32.24 337.40 -6.45 -38.70 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -5.57 Total: 4.21 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.12 Total: 2.15 kcal Atomic # 7 Polarization: -58.33 SS G_CDS: -0.12 Total: -58.45 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.29 Total: -7.25 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.24 -6.45 -38.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653819463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.754 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds