Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47493 * 2 1 4 4 H 1.08994 * 109.47426 * 179.82734 * 3 2 1 5 5 C 1.50706 * 109.47349 * 299.82752 * 3 2 1 6 6 H 1.07997 * 120.00537 * 119.99332 * 5 3 2 7 7 C 1.37884 * 119.99452 * 299.99952 * 5 3 2 8 8 N 1.31512 * 120.00198 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99472 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47045 * 60.00194 * 9 7 5 11 11 H 1.48502 * 109.46959 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47640 * 299.99997 * 9 7 5 13 13 N 1.46906 * 109.46969 * 59.82190 * 3 2 1 14 14 C 1.46903 * 110.99339 * 85.93680 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.53780 * 14 13 3 16 16 N 1.31125 * 126.55321 * 89.99769 * 15 14 13 17 17 C 1.34497 * 105.61449 * 180.02562 * 16 15 14 18 18 C 1.50698 * 126.28758 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47682 * 90.00014 * 18 17 16 20 20 O 1.21280 * 119.99722 * 359.97438 * 19 18 17 21 21 N 1.34771 * 120.00523 * 180.02562 * 19 18 17 22 22 C 1.46497 * 120.00309 * 179.97438 * 21 19 18 23 23 N 1.29948 * 107.42516 * 359.97438 * 17 16 15 24 24 O 1.21302 * 110.25046 * 359.71271 * 23 17 16 25 25 H 1.09005 * 109.47040 * 55.59366 * 1 2 3 26 26 H 1.08996 * 109.47380 * 295.59072 * 1 2 3 27 27 H 1.08998 * 109.47266 * 175.58754 * 1 2 3 28 28 H 1.09002 * 109.46901 * 120.00434 * 2 1 3 29 29 H 1.09005 * 109.47235 * 240.00111 * 2 1 3 30 30 H 0.96996 * 119.99408 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99692 * 209.88544 * 13 3 2 32 32 H 1.08994 * 109.46864 * 295.52945 * 14 13 3 33 33 H 1.08994 * 109.47486 * 55.53632 * 14 13 3 34 34 H 1.09006 * 109.47029 * 210.00032 * 18 17 16 35 35 H 1.09003 * 109.47315 * 329.98988 * 18 17 16 36 36 H 0.97005 * 119.99679 * 359.97438 * 21 19 18 37 37 H 1.08995 * 109.47547 * 59.99475 * 22 21 19 38 38 H 1.09006 * 109.47627 * 179.97438 * 22 21 19 39 39 H 1.08999 * 109.47025 * 299.98984 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1300 1.4424 0.0031 5 6 1.5413 2.1517 -1.2326 6 1 0.9201 3.0299 -1.1363 7 6 1.8780 1.6793 -2.4835 8 7 2.6347 0.6101 -2.6009 9 14 1.2591 2.5580 -4.0113 10 1 1.7537 3.9582 -4.0115 11 1 1.7582 1.8571 -5.2217 12 1 -0.2258 2.5576 -4.0155 13 7 1.5469 2.1362 1.1973 14 6 2.4393 1.9095 2.3420 15 6 1.9633 2.7220 3.5186 16 7 1.1126 2.3382 4.4397 17 6 0.9910 3.3829 5.2780 18 6 0.1232 3.4427 6.5086 19 6 0.9083 2.9602 7.7009 20 8 2.0592 2.6025 7.5648 21 7 0.3314 2.9252 8.9184 22 6 1.0945 2.4556 10.0774 23 7 1.7600 4.3309 4.8325 24 8 2.3321 3.9693 3.8258 25 1 -0.3633 0.5807 -0.8479 26 1 -0.3634 0.4439 0.9268 27 1 -0.3634 -1.0246 -0.0791 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.8712 0.2777 -3.4809 31 1 1.4287 3.1225 1.0207 32 1 2.4321 0.8516 2.6043 33 1 3.4527 2.2115 2.0781 34 1 -0.1982 4.4706 6.6770 35 1 -0.7512 2.8072 6.3679 36 1 -0.5892 3.2109 9.0273 37 1 1.9688 3.0909 10.2185 38 1 0.4669 2.4989 10.9676 39 1 1.4157 1.4277 9.9087 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653819464.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = 30.393236 kcal Electronic energy + Delta-G solvation = -21754.852443 eV Core-core repulsion = 18314.962839 eV Total energy + Delta-G solvation = -3439.889603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.34327 -39.91912 -36.65960 -35.78308 -34.90768 -33.70009 -32.09441 -30.79322 -30.09173 -27.21154 -26.76310 -24.97719 -23.38949 -23.17053 -21.66919 -20.61600 -19.16725 -18.16438 -17.47081 -17.18544 -16.60953 -16.26138 -15.74584 -15.12253 -14.58293 -14.34462 -14.07603 -13.78455 -13.65990 -13.49730 -13.02690 -12.67881 -12.59901 -12.39307 -11.98656 -11.85751 -11.59347 -11.39962 -10.96067 -10.87606 -10.76389 -10.44695 -10.32873 -10.16982 -9.84374 -9.67929 -9.52184 -9.41201 -8.86096 -8.52218 -7.48643 -6.07007 -4.13107 1.35491 2.29072 2.30967 2.92962 3.07176 3.29490 3.34443 3.37141 3.68372 4.10939 4.37213 4.44137 4.81824 4.91089 4.96082 5.15234 5.20026 5.27849 5.39569 5.44657 5.69474 5.83837 5.97928 6.02450 6.21989 6.50595 6.66202 6.82553 7.04627 7.14206 7.22667 7.40515 7.68097 7.70440 7.77769 7.85803 8.11358 8.24650 8.36602 8.48446 8.92596 9.51764 10.98850 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.037381 B = 0.003077 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.873020 B = 9097.822490 C = 9334.190175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C 0.218 3.782 4 H 0.008 0.992 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.675 5.675 14 C 0.148 3.852 15 C 0.207 3.793 16 N -0.465 5.465 17 C 0.179 3.821 18 C -0.047 4.047 19 C 0.519 3.481 20 O -0.524 6.524 21 N -0.736 5.736 22 C 0.088 3.912 23 N -0.381 5.381 24 O 0.076 5.924 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.089 0.911 30 H 0.263 0.737 31 H 0.337 0.663 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.127 0.873 36 H 0.404 0.596 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 4.151 19.868 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.111 3.889 4 H 0.026 0.974 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.309 5.309 14 C 0.017 3.983 15 C -0.014 4.014 16 N -0.199 5.199 17 C -0.095 4.095 18 C -0.088 4.088 19 C 0.304 3.696 20 O -0.399 6.399 21 N -0.389 5.389 22 C -0.056 4.056 23 N -0.089 5.089 24 O 0.017 5.983 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.237 0.763 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.098 3.743 20.403 21.360 hybrid contribution 0.013 1.043 -1.070 1.494 sum -5.085 4.785 19.332 20.555 Atomic orbital electron populations 1.21455 0.97375 0.97588 1.01407 1.21465 0.95231 0.97850 0.99771 1.19238 0.93394 0.91584 0.84661 0.97396 1.21084 1.32124 1.12183 0.90087 0.92179 1.24862 0.94915 0.94965 0.98923 1.69862 1.36296 1.22558 1.23815 0.86599 0.79262 0.79641 0.82152 1.20318 1.21314 1.20181 1.60888 1.47701 1.16680 1.05644 1.20588 0.95402 0.97438 0.84837 1.29073 0.91262 0.83657 0.97400 1.71853 1.17352 1.26711 1.03984 1.24747 0.99185 0.86714 0.98847 1.19800 0.97107 1.05440 0.86455 1.20291 0.87421 0.77988 0.83947 1.90770 1.17602 1.46554 1.84996 1.45686 1.16951 1.68330 1.07919 1.21548 0.96815 1.00295 0.86937 1.74529 1.10938 1.23662 0.99809 1.85277 1.51431 1.29747 1.31869 0.92490 0.93868 0.96653 0.96874 0.89244 0.92750 0.84583 0.87143 0.91979 0.86156 0.85486 0.76258 0.92185 0.90468 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.52 37.16 0.35 -2.30 16 2 C -0.10 -2.43 5.59 -26.74 -0.15 -2.58 16 3 C 0.22 5.10 2.30 -68.86 -0.16 4.94 16 4 H 0.01 0.21 7.71 -51.93 -0.40 -0.19 16 5 C -0.52 -13.25 7.26 -34.43 -0.25 -13.50 16 6 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.49 5.64 -109.22 -0.62 -14.10 16 14 C 0.15 2.56 6.16 -4.97 -0.03 2.53 16 15 C 0.21 3.58 7.98 -13.06 -0.10 3.48 16 16 N -0.47 -8.19 11.55 -9.86 -0.11 -8.31 16 17 C 0.18 2.81 6.71 -156.37 -1.05 1.76 16 18 C -0.05 -0.48 6.33 -29.04 -0.18 -0.67 16 19 C 0.52 6.05 7.82 -10.99 -0.09 5.96 16 20 O -0.52 -8.84 16.03 5.56 0.09 -8.75 16 21 N -0.74 -5.31 5.71 -67.08 -0.38 -5.70 16 22 C 0.09 0.57 10.70 59.85 0.64 1.21 16 23 N -0.38 -6.48 12.16 30.90 0.38 -6.11 16 24 O 0.08 1.30 11.31 18.09 0.20 1.51 16 25 H 0.06 1.34 7.07 -51.93 -0.37 0.98 16 26 H 0.04 0.92 7.74 -51.93 -0.40 0.51 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.01 0.27 7.61 -51.93 -0.39 -0.12 16 29 H 0.09 2.31 6.07 -51.93 -0.31 2.00 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.34 6.64 8.13 -39.29 -0.32 6.32 16 32 H 0.11 1.89 7.61 -51.93 -0.40 1.50 16 33 H 0.06 1.00 7.94 -51.93 -0.41 0.59 16 34 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.13 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.40 1.39 8.83 -40.82 -0.36 1.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 333.74 15.07 5.03 5.03 Total: -1.00 -32.58 333.74 -6.36 -38.93 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -5.44 Total: 3.01 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.11 Total: 2.48 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.11 Total: -57.80 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: 0.29 Total: -7.24 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.58 -6.36 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653819464.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.327 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds