Wall clock time and date at job start Tue Mar 31 2020 06:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39673 * 119.99910 * 2 1 4 4 C 1.38934 * 120.07340 * 0.27886 * 3 2 1 5 5 C 1.38081 * 119.92302 * 180.22845 * 4 3 2 6 6 C 1.38315 * 120.07434 * 359.76590 * 5 4 3 7 7 C 1.38262 * 120.15174 * 359.97438 * 6 5 4 8 8 C 1.38123 * 120.07203 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.03999 * 179.97438 * 8 7 6 10 10 N 1.46498 * 109.47400 * 260.00289 * 9 8 7 11 11 C 1.39679 * 120.00270 * 180.26943 * 10 9 8 12 12 C 1.39339 * 119.94839 * 359.45499 * 11 10 9 13 13 C 1.38476 * 120.41788 * 179.71750 * 12 11 10 14 14 C 1.37692 * 120.32938 * 0.55194 * 13 12 11 15 15 C 1.40743 * 119.89084 * 359.72482 * 14 13 12 16 16 C 1.41410 * 120.21022 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00389 * 150.19347 * 16 15 14 18 18 C 1.39931 * 119.99691 * 330.19242 * 16 15 14 19 19 N 1.30828 * 120.00027 * 161.72687 * 18 16 15 20 20 Si 1.86799 * 120.00249 * 341.72890 * 18 16 15 21 21 H 1.48502 * 109.47260 * 95.41182 * 20 18 16 22 22 H 1.48495 * 109.47511 * 215.41249 * 20 18 16 23 23 H 1.48503 * 109.47140 * 335.41206 * 20 18 16 24 24 C 1.38279 * 119.95270 * 179.72432 * 11 10 9 25 25 H 1.09003 * 109.46819 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47111 * 299.99936 * 1 2 3 27 27 H 1.08999 * 109.47288 * 59.99668 * 1 2 3 28 28 H 0.96999 * 119.99695 * 180.02562 * 2 1 3 29 29 H 1.08001 * 120.03910 * 359.97438 * 4 3 2 30 30 H 1.08000 * 119.96871 * 179.79362 * 5 4 3 31 31 H 1.08004 * 119.92227 * 180.02562 * 6 5 4 32 32 H 1.07999 * 119.96268 * 180.02562 * 7 6 5 33 33 H 1.08991 * 109.47231 * 139.99934 * 9 8 7 34 34 H 1.09004 * 109.46870 * 20.00192 * 9 8 7 35 35 H 0.97006 * 119.99646 * 359.97438 * 10 9 8 36 36 H 1.07990 * 119.78858 * 359.97438 * 12 11 10 37 37 H 1.08008 * 119.83778 * 180.27745 * 13 12 11 38 38 H 1.07997 * 120.05524 * 179.74351 * 14 13 12 39 39 H 0.97001 * 119.99964 * 179.97438 * 19 18 16 40 40 H 1.07999 * 120.16271 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4702 2.4137 0.0059 5 6 2.1637 3.6077 0.0011 6 6 3.5469 3.6059 -0.0047 7 6 4.2398 2.4095 -0.0051 8 6 3.5523 1.2115 0.0008 9 6 4.3083 -0.0922 -0.0003 10 7 4.3392 -0.6377 -1.3595 11 6 4.9837 -1.8513 -1.6106 12 6 5.6067 -2.5364 -0.5694 13 6 6.2435 -3.7431 -0.8062 14 6 6.2776 -4.2737 -2.0763 15 6 5.6576 -3.5902 -3.1390 16 6 5.6881 -4.1292 -4.4460 17 1 4.8796 -3.9266 -5.1327 18 6 6.7660 -4.9252 -4.8495 19 7 6.6477 -5.7070 -5.8917 20 14 8.3737 -4.8715 -3.8999 21 1 8.3996 -5.9758 -2.9074 22 1 9.5107 -5.0264 -4.8424 23 1 8.4890 -3.5696 -3.1950 24 6 5.0073 -2.3681 -2.8929 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.9500 -0.8401 -0.0004 29 1 0.3902 2.4158 0.0100 30 1 1.6257 4.5441 0.0022 31 1 4.0868 4.5413 -0.0080 32 1 5.3198 2.4116 -0.0091 33 1 3.8129 -0.8000 0.6642 34 1 5.3277 0.0787 0.3459 35 1 3.9084 -0.1583 -2.0844 36 1 5.5893 -2.1258 0.4292 37 1 6.7195 -4.2685 0.0086 38 1 6.7790 -5.2131 -2.2568 39 1 7.3949 -6.2585 -6.1716 40 1 4.5282 -1.8359 -3.7014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001656261391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:02 Heat of formation + Delta-G solvation = 46.757271 kcal Electronic energy + Delta-G solvation = -20856.932857 eV Core-core repulsion = 17828.602114 eV Total energy + Delta-G solvation = -3028.330743 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.80783 -37.97410 -35.54156 -35.19639 -33.28865 -31.51981 -30.15891 -29.74647 -28.18948 -26.02207 -25.26944 -24.84648 -21.72619 -21.34203 -21.00429 -20.01056 -17.62454 -17.42436 -16.42226 -15.91273 -15.65842 -14.77245 -14.73225 -14.48507 -14.27338 -14.22092 -13.93687 -13.33713 -13.18343 -12.92530 -12.55678 -12.42559 -12.34785 -12.23468 -11.84222 -11.53908 -11.26318 -10.98600 -10.73325 -10.68301 -10.39354 -10.21597 -9.75864 -9.47881 -9.23625 -8.87687 -8.85387 -7.57171 -7.46109 -6.86267 -6.43607 -4.42184 1.32693 1.59241 2.72194 2.94535 3.20086 3.30253 3.41963 3.42308 3.74267 4.08438 4.37192 4.62591 4.78425 4.84984 5.00892 5.06502 5.28921 5.32194 5.40827 5.53008 5.55948 5.62225 5.74431 5.86604 6.02224 6.07267 6.26558 6.35015 6.48782 6.60056 6.61423 6.81674 6.82596 6.88021 7.02614 7.27574 7.35703 7.59961 7.63753 7.72374 7.82753 8.02554 8.38611 8.47075 8.54396 8.81113 8.94206 10.16697 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.026584 B = 0.003624 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.000682 B = 7724.117331 C = 7975.384577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.748 5.748 3 C 0.232 3.768 4 C -0.204 4.204 5 C -0.070 4.070 6 C -0.185 4.185 7 C -0.054 4.054 8 C -0.177 4.177 9 C 0.183 3.817 10 N -0.756 5.756 11 C 0.235 3.765 12 C -0.302 4.302 13 C -0.048 4.048 14 C -0.272 4.272 15 C 0.126 3.874 16 C -0.452 4.452 17 H 0.087 0.913 18 C 0.086 3.914 19 N -0.814 5.814 20 Si 0.915 3.085 21 H -0.272 1.272 22 H -0.294 1.294 23 H -0.244 1.244 24 C -0.277 4.277 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.407 0.593 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.391 0.609 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.096 0.904 39 H 0.283 0.717 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.985 13.604 11.729 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.378 5.378 3 C 0.127 3.873 4 C -0.227 4.227 5 C -0.089 4.089 6 C -0.205 4.205 7 C -0.074 4.074 8 C -0.182 4.182 9 C 0.058 3.942 10 N -0.389 5.389 11 C 0.135 3.865 12 C -0.325 4.325 13 C -0.067 4.067 14 C -0.292 4.292 15 C 0.122 3.878 16 C -0.481 4.481 17 H 0.105 0.895 18 C -0.132 4.132 19 N -0.439 5.439 20 Si 0.742 3.258 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.167 1.167 24 C -0.301 4.301 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.243 0.757 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -8.117 13.432 11.714 19.583 hybrid contribution 0.666 -0.257 -0.014 0.714 sum -7.451 13.175 11.700 19.131 Atomic orbital electron populations 1.21522 0.80441 1.02453 1.00764 1.44634 1.05642 1.05845 1.81638 1.17704 0.90516 0.86409 0.92701 1.20597 0.99425 0.91164 1.11511 1.20875 0.94245 0.97086 0.96719 1.20867 0.94213 0.97693 1.07753 1.20869 0.99572 0.91334 0.95582 1.19491 0.91597 0.95649 1.11423 1.19752 0.98369 0.90283 0.85787 1.44610 1.63301 1.23206 1.07782 1.17566 0.90811 0.84430 0.93643 1.19898 1.15295 1.00684 0.96630 1.20363 0.96296 0.94360 0.95672 1.20896 1.12911 1.02152 0.93264 1.17438 0.88370 0.89141 0.92808 1.19451 1.06428 1.24604 0.97585 0.89455 1.26135 1.01270 0.91350 0.94482 1.69710 1.33003 1.17599 1.23577 0.86270 0.79493 0.81367 0.78685 1.19820 1.22232 1.16736 1.20401 1.16348 0.99630 0.93741 0.90834 0.93169 0.93038 0.75677 0.86320 0.86456 0.86540 0.86051 0.93053 0.92269 0.77535 0.89075 0.89091 0.88595 0.90644 0.88625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 9.94 59.85 0.60 1.39 16 2 N -0.75 -8.49 5.80 -65.39 -0.38 -8.87 16 3 C 0.23 2.84 6.63 -83.78 -0.56 2.28 16 4 C -0.20 -2.25 9.31 -39.38 -0.37 -2.62 16 5 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.19 -1.98 10.04 -39.54 -0.40 -2.38 16 7 C -0.05 -0.65 9.66 -39.61 -0.38 -1.03 16 8 C -0.18 -2.27 5.27 -104.42 -0.55 -2.82 16 9 C 0.18 2.60 4.32 -5.19 -0.02 2.58 16 10 N -0.76 -12.74 5.72 -59.86 -0.34 -13.08 16 11 C 0.23 4.94 6.64 -83.86 -0.56 4.38 16 12 C -0.30 -6.34 9.32 -39.08 -0.36 -6.71 16 13 C -0.05 -1.07 10.01 -39.69 -0.40 -1.46 16 14 C -0.27 -6.76 7.17 -38.84 -0.28 -7.04 16 15 C 0.13 3.29 5.10 -106.85 -0.55 2.75 16 16 C -0.45 -12.60 9.57 -37.74 -0.36 -12.96 16 17 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 18 C 0.09 2.32 5.40 -17.35 -0.09 2.22 16 19 N -0.81 -22.30 13.93 55.55 0.77 -21.53 16 20 Si 0.91 21.61 24.52 -169.99 -4.17 17.44 16 21 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.24 -5.94 6.86 56.52 0.39 -5.55 16 24 C -0.28 -6.61 9.63 -38.68 -0.37 -6.98 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.38 7.94 -51.93 -0.41 -0.03 16 27 H 0.05 0.43 7.96 -51.93 -0.41 0.01 16 28 H 0.41 5.00 7.07 -40.82 -0.29 4.71 16 29 H 0.12 1.11 6.74 -52.49 -0.35 0.76 16 30 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.12 1.33 8.04 -52.49 -0.42 0.91 16 33 H 0.05 0.73 6.92 -51.93 -0.36 0.37 16 34 H 0.06 0.86 7.80 -51.93 -0.40 0.45 16 35 H 0.39 6.45 8.47 -40.82 -0.35 6.10 16 36 H 0.09 1.70 6.70 -52.49 -0.35 1.35 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 2.39 4.73 -52.49 -0.25 2.15 16 39 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 40 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -28.84 327.80 -9.53 -38.37 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -5.31 Total: 12.25 kcal Atomic # 6 Polarization: -24.47 SS G_CDS: -5.05 Total: -29.52 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.05 Total: -43.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.17 Total: 17.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.84 -9.53 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656261391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.132 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds