Wall clock time and date at job start Tue Mar 31 2020 07:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47549 * 2 1 4 4 C 1.50702 * 109.47049 * 239.99618 * 2 1 3 5 5 H 1.07994 * 120.00686 * 239.99740 * 4 2 1 6 6 C 1.37879 * 119.99702 * 60.00472 * 4 2 1 7 7 N 1.31517 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46813 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47064 * 119.99832 * 8 6 4 11 11 H 1.48493 * 109.47488 * 239.99863 * 8 6 4 12 12 C 1.53001 * 109.47318 * 120.00362 * 2 1 3 13 13 N 1.46504 * 109.46631 * 299.99828 * 12 2 1 14 14 C 1.34776 * 119.99608 * 179.97438 * 13 12 2 15 15 O 1.21590 * 120.00576 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00016 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00416 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47475 * 180.02562 * 17 16 14 19 19 N 1.30894 * 125.88928 * 275.02677 * 18 17 16 20 20 C 1.33656 * 109.76515 * 179.97438 * 19 18 17 21 21 N 1.39607 * 125.60737 * 180.02562 * 20 19 18 22 22 N 1.31203 * 108.77946 * 0.02562 * 20 19 18 23 23 N 1.34337 * 125.89796 * 94.99970 * 18 17 16 24 24 H 0.96999 * 126.75988 * 0.03917 * 23 18 17 25 25 H 1.09003 * 109.47136 * 299.99700 * 1 2 3 26 26 H 1.08998 * 109.47671 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.47635 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47649 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46965 * 300.00676 * 3 2 1 30 30 H 1.09001 * 109.46879 * 59.99512 * 3 2 1 31 31 H 0.96999 * 120.00187 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47283 * 180.02562 * 12 2 1 33 33 H 1.09005 * 109.47535 * 59.99391 * 12 2 1 34 34 H 0.96996 * 120.00462 * 0.02562 * 13 12 2 35 35 H 0.97003 * 119.99669 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.47247 * 60.00291 * 17 16 14 37 37 H 1.08999 * 109.47302 * 300.00617 * 17 16 14 38 38 H 0.97000 * 120.00018 * 359.97438 * 21 20 19 39 39 H 0.96991 * 119.99728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1472 -2.2865 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6694 15 8 2.5759 -1.4801 3.7811 16 7 1.4280 0.1441 4.7700 17 6 1.7810 -0.3570 6.1005 18 6 1.1575 0.5252 7.1513 19 7 1.6657 1.6365 7.6203 20 6 0.8453 2.1566 8.5383 21 7 1.0647 3.3385 9.2482 22 7 -0.2002 1.3737 8.6625 23 7 -0.0158 0.3069 7.7680 24 1 -0.6170 -0.4405 7.6241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6766 -1.7490 1.2493 34 1 0.9937 0.7577 2.3564 35 1 0.8706 0.9331 4.6810 36 1 2.8648 -0.3495 6.2158 37 1 1.4105 -1.3756 6.2152 38 1 1.8699 3.8561 9.0914 39 1 0.4123 3.6416 9.8988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675310429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:54 Heat of formation + Delta-G solvation = 59.119083 kcal Electronic energy + Delta-G solvation = -21674.757969 eV Core-core repulsion = 18268.406763 eV Total energy + Delta-G solvation = -3406.351206 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34773 -39.64685 -36.61896 -35.45542 -34.40534 -33.29265 -32.18205 -31.05626 -30.31429 -27.19957 -25.72118 -25.47190 -24.50731 -22.27225 -21.16148 -20.74410 -18.80241 -18.73518 -18.08358 -16.73249 -16.34423 -16.00311 -15.78490 -15.45606 -15.31361 -14.74374 -14.29566 -13.78630 -13.66652 -13.27236 -12.86932 -12.65899 -12.18717 -12.10903 -11.73714 -11.38599 -11.20471 -10.87854 -10.65615 -10.38763 -10.28765 -10.27739 -10.19503 -9.85802 -9.63186 -9.31974 -9.17829 -8.78207 -8.66761 -8.42714 -8.24684 -6.02065 -4.11954 1.23222 2.23636 2.66463 2.98001 3.25337 3.27581 3.36399 3.41425 3.53561 4.04997 4.38716 4.46064 4.67617 5.16568 5.24945 5.38311 5.59284 5.97278 6.18373 6.35382 6.35815 6.50620 6.68743 6.78012 6.83103 6.88429 7.03017 7.03221 7.05709 7.08896 7.21346 7.38526 7.56219 7.70310 8.01476 8.05029 8.12468 8.35261 8.41074 8.87398 8.94520 9.53973 10.99396 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.002879 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.638858 B = 9724.239044 C =10013.137294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.150 3.850 13 N -0.729 5.729 14 C 0.703 3.297 15 O -0.596 6.596 16 N -0.750 5.750 17 C 0.221 3.779 18 C 0.297 3.703 19 N -0.551 5.551 20 C 0.474 3.526 21 N -0.824 5.824 22 N -0.365 5.365 23 N -0.470 5.470 24 H 0.443 0.557 25 H 0.005 0.995 26 H 0.085 0.915 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.259 0.741 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.398 0.602 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.415 0.585 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 3.308 19.309 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.543 4.543 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.027 3.973 13 N -0.384 5.384 14 C 0.402 3.598 15 O -0.474 6.474 16 N -0.409 5.409 17 C 0.094 3.906 18 C 0.016 3.984 19 N -0.287 5.287 20 C 0.102 3.898 21 N -0.381 5.381 22 N -0.205 5.205 23 N -0.190 5.190 24 H 0.289 0.711 25 H 0.024 0.976 26 H 0.104 0.896 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.229 0.771 35 H 0.231 0.769 36 H 0.123 0.877 37 H 0.110 0.890 38 H 0.246 0.754 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.361 2.745 19.585 19.917 hybrid contribution -0.525 0.162 -0.845 1.008 sum -2.886 2.906 18.740 19.183 Atomic orbital electron populations 1.21824 0.97809 0.99154 1.00008 1.18370 0.92773 0.92809 0.90561 1.21825 0.98641 0.98328 1.00020 1.21025 1.31364 1.12082 0.89825 0.92307 1.24885 0.94878 0.94926 0.98874 1.69815 1.36753 1.22819 1.23106 0.86516 0.78628 0.79761 0.82983 1.19726 1.21107 1.21079 1.21629 0.98017 0.95413 0.82221 1.45506 1.55419 1.32987 1.04438 1.15934 0.80451 0.82903 0.80478 1.90908 1.42887 1.27681 1.85958 1.44951 1.58275 1.33839 1.03847 1.19405 1.00906 0.93473 0.76820 1.24060 0.85435 0.93294 0.95566 1.70246 1.32193 1.10451 1.15820 1.20476 0.88496 0.89756 0.91026 1.40974 1.28313 1.22383 1.46470 1.78193 1.22768 1.01120 1.18413 1.47646 1.18198 1.21781 1.31327 0.71051 0.97587 0.89647 0.95429 0.95379 0.89661 0.97543 0.93082 0.92761 0.92808 0.77074 0.76876 0.87735 0.89048 0.75363 0.75626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.08 37.15 0.30 -2.58 16 2 C 0.06 1.27 0.50 -155.67 -0.08 1.19 16 3 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 4 C -0.50 -13.05 8.01 -34.44 -0.28 -13.33 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -23.44 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.55 16 9 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.15 3.12 4.50 -4.04 -0.02 3.11 16 13 N -0.73 -12.57 4.96 -65.22 -0.32 -12.90 16 14 C 0.70 11.67 8.57 -86.91 -0.74 10.92 16 15 O -0.60 -12.02 16.34 5.29 0.09 -11.94 16 16 N -0.75 -9.05 5.55 -66.42 -0.37 -9.42 16 17 C 0.22 2.25 6.30 -5.20 -0.03 2.22 16 18 C 0.30 3.04 7.60 -155.73 -1.18 1.86 16 19 N -0.55 -6.61 11.21 -11.13 -0.12 -6.73 16 20 C 0.47 5.31 9.44 -321.16 -3.03 2.28 16 21 N -0.82 -6.11 9.13 30.00 0.27 -5.83 16 22 N -0.36 -4.14 12.82 29.99 0.38 -3.75 16 23 N -0.47 -4.30 7.43 32.62 0.24 -4.06 16 24 H 0.44 2.71 8.96 -182.35 -1.63 1.07 16 25 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 26 H 0.08 2.10 6.07 -51.93 -0.32 1.79 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 2.11 6.07 -51.92 -0.32 1.80 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.61 8.31 -40.82 -0.34 6.28 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.39 6.16 6.18 -40.82 -0.25 5.91 16 35 H 0.40 4.22 8.48 -40.82 -0.35 3.87 16 36 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.42 2.43 8.96 -40.82 -0.37 2.07 16 39 H 0.41 2.19 8.96 -40.82 -0.37 1.82 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -31.73 326.18 -10.66 -42.39 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.38 Total: 10.03 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -4.86 Total: 4.67 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.60 Total: -65.62 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.73 -10.66 -42.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675310429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.506 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds