Wall clock time and date at job start Tue Mar 31 2020 07:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47549 * 2 1 4 4 C 1.50702 * 109.47049 * 239.99618 * 2 1 3 5 5 H 1.07994 * 120.00686 * 239.99740 * 4 2 1 6 6 C 1.37879 * 119.99702 * 60.00472 * 4 2 1 7 7 N 1.31517 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00250 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46813 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47064 * 119.99832 * 8 6 4 11 11 H 1.48493 * 109.47488 * 239.99863 * 8 6 4 12 12 C 1.53001 * 109.47318 * 120.00362 * 2 1 3 13 13 N 1.46504 * 109.46631 * 299.99828 * 12 2 1 14 14 C 1.34776 * 119.99608 * 179.97438 * 13 12 2 15 15 O 1.21590 * 120.00576 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00016 * 179.97438 * 14 13 12 17 17 C 1.46494 * 120.00416 * 179.97438 * 16 14 13 18 18 C 1.50699 * 109.47475 * 180.02562 * 17 16 14 19 19 N 1.30894 * 125.88928 * 275.02677 * 18 17 16 20 20 C 1.33656 * 109.76515 * 179.97438 * 19 18 17 21 21 N 1.39607 * 125.60737 * 180.02562 * 20 19 18 22 22 N 1.31203 * 108.77946 * 0.02562 * 20 19 18 23 23 N 1.34337 * 125.89796 * 94.99970 * 18 17 16 24 24 H 0.96999 * 126.75988 * 0.03917 * 23 18 17 25 25 H 1.09003 * 109.47136 * 299.99700 * 1 2 3 26 26 H 1.08998 * 109.47671 * 60.00240 * 1 2 3 27 27 H 1.09002 * 109.47635 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47649 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46965 * 300.00676 * 3 2 1 30 30 H 1.09001 * 109.46879 * 59.99512 * 3 2 1 31 31 H 0.96999 * 120.00187 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47283 * 180.02562 * 12 2 1 33 33 H 1.09005 * 109.47535 * 59.99391 * 12 2 1 34 34 H 0.96996 * 120.00462 * 0.02562 * 13 12 2 35 35 H 0.97003 * 119.99669 * 0.02562 * 16 14 13 36 36 H 1.09001 * 109.47247 * 60.00291 * 17 16 14 37 37 H 1.08999 * 109.47302 * 300.00617 * 17 16 14 38 38 H 0.97000 * 120.00018 * 359.97438 * 21 20 19 39 39 H 0.96991 * 119.99728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 3.1472 -2.2865 -3.6038 10 1 1.1676 -1.5866 -4.8165 11 1 3.1471 -0.1859 -4.8161 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0307 2.4454 14 6 1.8768 -0.4915 3.6694 15 8 2.5759 -1.4801 3.7811 16 7 1.4280 0.1441 4.7700 17 6 1.7810 -0.3570 6.1005 18 6 1.1575 0.5252 7.1513 19 7 1.6657 1.6365 7.6203 20 6 0.8453 2.1566 8.5383 21 7 1.0647 3.3385 9.2482 22 7 -0.2002 1.3737 8.6625 23 7 -0.0158 0.3069 7.7680 24 1 -0.6170 -0.4405 7.6241 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 0.7081 1.1609 -3.4844 32 1 3.1300 -0.7209 1.2494 33 1 1.6766 -1.7490 1.2493 34 1 0.9937 0.7577 2.3564 35 1 0.8706 0.9331 4.6810 36 1 2.8648 -0.3495 6.2158 37 1 1.4105 -1.3756 6.2152 38 1 1.8699 3.8561 9.0914 39 1 0.4123 3.6416 9.8988 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675310429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:53 Heat of formation + Delta-G solvation = 36.543818 kcal Electronic energy + Delta-G solvation = -21675.736906 eV Core-core repulsion = 18268.406763 eV Total energy + Delta-G solvation = -3407.330143 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.13826 -40.99461 -38.26824 -36.40226 -35.33619 -34.94958 -33.06995 -32.64880 -31.29853 -28.26482 -27.52425 -27.32450 -26.11670 -23.07030 -22.11486 -21.91221 -20.55639 -19.82563 -19.07648 -17.75469 -17.64613 -17.16694 -16.77754 -16.58860 -16.53307 -16.38253 -15.52795 -15.18461 -14.99164 -14.69544 -14.35444 -13.98036 -13.91509 -13.17270 -13.07343 -12.95032 -12.65593 -12.53888 -12.43540 -12.21716 -12.11154 -11.44381 -11.43549 -11.15659 -11.10654 -10.96370 -10.65908 -10.40594 -10.33269 -9.68552 -9.35369 -7.99612 -6.14859 0.41192 1.43485 1.47800 1.51151 1.57230 1.74200 2.11902 2.20720 2.37053 2.49337 3.24388 3.31966 3.42757 3.69271 4.38597 4.45744 4.55499 4.59779 4.75855 4.90054 5.04674 5.10111 5.13845 5.18987 5.24781 5.30976 5.42605 5.65614 5.70921 5.71062 5.98113 6.06934 6.19117 6.26046 6.37880 6.47110 6.50583 6.90378 7.10426 7.36729 7.52990 7.61209 8.99414 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.038577 B = 0.002879 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.638858 B = 9724.239044 C =10013.137294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.525 4.525 5 H 0.046 0.954 6 C 0.027 3.973 7 N -0.900 5.900 8 Si 0.944 3.056 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.706 3.294 15 O -0.631 6.631 16 N -0.731 5.731 17 C 0.225 3.775 18 C 0.301 3.699 19 N -0.576 5.576 20 C 0.461 3.539 21 N -0.812 5.812 22 N -0.384 5.384 23 N -0.457 5.457 24 H 0.456 0.544 25 H 0.036 0.964 26 H 0.060 0.940 27 H 0.020 0.980 28 H 0.018 0.982 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.259 0.741 32 H 0.038 0.962 33 H 0.040 0.960 34 H 0.405 0.595 35 H 0.408 0.592 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.422 0.578 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 3.664 20.467 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.065 0.935 6 C -0.172 4.172 7 N -0.539 5.539 8 Si 0.771 3.229 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.405 3.595 15 O -0.513 6.513 16 N -0.389 5.389 17 C 0.098 3.902 18 C 0.021 3.979 19 N -0.313 5.313 20 C 0.090 3.910 21 N -0.371 5.371 22 N -0.225 5.225 23 N -0.178 5.178 24 H 0.305 0.695 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.241 0.759 35 H 0.244 0.756 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.255 0.745 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.917 3.141 20.790 21.227 hybrid contribution -0.370 0.071 -1.128 1.189 sum -3.286 3.212 19.662 20.192 Atomic orbital electron populations 1.21663 0.97140 0.98735 1.00271 1.18360 0.93238 0.92952 0.90388 1.21671 0.97957 0.97980 1.00246 1.21319 1.31464 1.12103 0.91488 0.93527 1.25451 0.95210 0.95601 1.00982 1.69921 1.37161 1.23404 1.23447 0.85717 0.78085 0.78758 0.80301 1.19867 1.20853 1.20905 1.21145 0.96854 0.94764 0.82901 1.45201 1.55723 1.33168 1.03904 1.15942 0.80060 0.82555 0.80922 1.90892 1.44503 1.29396 1.86498 1.44719 1.57280 1.33493 1.03429 1.19481 1.00779 0.94344 0.75595 1.23887 0.85624 0.92964 0.95444 1.70231 1.33061 1.11340 1.16635 1.20841 0.88365 0.90617 0.91226 1.41030 1.28827 1.21271 1.45942 1.78146 1.23257 1.01777 1.19310 1.47574 1.18009 1.21712 1.30533 0.69501 0.94487 0.92108 0.96128 0.96281 0.92072 0.94560 0.93139 0.94398 0.94141 0.75896 0.75624 0.88243 0.87079 0.74520 0.74487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.70 16 4 C -0.53 -27.34 8.01 25.60 0.21 -27.13 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.45 16 6 C 0.03 1.41 5.15 84.65 0.44 1.85 16 7 N -0.90 -47.66 9.35 21.45 0.20 -47.46 16 8 Si 0.94 42.27 29.54 68.60 2.03 44.30 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 C 0.17 6.90 4.50 86.38 0.39 7.29 16 13 N -0.73 -23.74 4.96 -478.51 -2.37 -26.11 16 14 C 0.71 22.21 8.57 179.05 1.53 23.75 16 15 O -0.63 -24.84 16.34 -4.00 -0.07 -24.90 16 16 N -0.73 -15.96 5.55 -482.30 -2.68 -18.64 16 17 C 0.22 4.10 6.30 85.63 0.54 4.64 16 18 C 0.30 5.56 7.60 138.24 1.05 6.61 16 19 N -0.58 -12.84 11.21 -189.11 -2.12 -14.96 16 20 C 0.46 9.58 9.44 260.91 2.46 12.04 16 21 N -0.81 -10.72 9.13 -59.00 -0.54 -11.26 16 22 N -0.38 -8.03 12.82 -59.03 -0.76 -8.79 16 23 N -0.46 -7.42 7.43 -50.73 -0.38 -7.79 16 24 H 0.46 4.52 8.96 -213.11 -1.91 2.61 16 25 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 26 H 0.06 2.96 6.07 -2.39 -0.01 2.94 16 27 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 3.00 6.07 -2.38 -0.01 2.98 16 30 H 0.04 1.32 6.86 -2.39 -0.02 1.31 16 31 H 0.26 13.21 8.31 -92.71 -0.77 12.44 16 32 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.40 11.56 6.18 -92.71 -0.57 10.99 16 35 H 0.41 7.52 8.48 -92.71 -0.79 6.73 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.42 4.29 8.96 -92.71 -0.83 3.46 16 39 H 0.42 3.79 8.96 -92.72 -0.83 2.95 16 Total: -1.00 -67.13 326.18 -2.71 -69.84 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -3.78 Total: 23.77 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 7.75 Total: 22.01 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -8.64 Total: -135.01 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.90 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.13 -2.71 -69.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675310429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.385 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds