Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 C 1.53001 * 109.46597 * 184.99970 * 6 4 2 8 8 N 1.46507 * 109.46625 * 180.02562 * 7 6 4 9 9 C 1.34780 * 119.99957 * 179.97438 * 8 7 6 10 10 O 1.21507 * 120.00013 * 0.02562 * 9 8 7 11 11 C 1.48275 * 120.00113 * 179.97438 * 9 8 7 12 12 C 1.47491 * 128.71315 * 180.02562 * 11 9 8 13 13 N 1.30649 * 102.71323 * 180.02562 * 12 11 9 14 14 O 1.20829 * 109.62346 * 0.02562 * 13 12 11 15 15 N 1.20906 * 115.90492 * 359.68893 * 14 13 12 16 16 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 17 17 C 1.36936 * 120.00314 * 84.99627 * 16 4 2 18 18 H 1.08001 * 120.00159 * 0.02562 * 17 16 4 19 19 C 1.38811 * 119.99842 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 179.72505 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72270 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72118 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72153 * 21 19 17 25 25 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 26 26 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 31 31 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 32 32 H 1.08993 * 109.47108 * 304.99684 * 6 4 2 33 33 H 1.08998 * 109.47048 * 65.00196 * 6 4 2 34 34 H 1.08994 * 109.47681 * 299.99716 * 7 6 4 35 35 H 1.09003 * 109.47681 * 60.00455 * 7 6 4 36 36 H 0.96997 * 120.00099 * 0.02562 * 8 7 6 37 37 H 1.07993 * 128.63851 * 359.97438 * 12 11 9 38 38 H 0.97000 * 120.00040 * 264.99759 * 16 4 2 39 39 H 0.96999 * 119.99889 * 180.27497 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 6 1.9347 -2.8478 2.5566 8 7 1.4468 -4.2292 2.5563 9 6 1.6878 -5.0292 3.6139 10 8 2.3093 -4.6045 4.5678 11 6 1.1936 -6.4271 3.6139 12 6 1.3447 -7.4590 4.6569 13 7 0.7255 -8.4856 4.1376 14 8 0.2924 -8.1901 3.0490 15 7 0.5062 -7.0571 2.6852 16 7 3.5049 -0.7208 1.2496 17 6 4.1892 0.3542 1.7510 18 1 3.6489 1.2015 2.1467 19 6 5.5773 0.3548 1.7508 20 7 6.2349 1.3904 2.2279 21 14 6.5120 -1.1104 1.0659 22 1 6.7659 -2.0882 2.1543 23 1 5.7067 -1.7561 -0.0017 24 1 7.8062 -0.6517 0.5007 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.4437 -2.1650 1.1597 33 1 1.9645 -2.7028 0.4074 34 1 3.0210 -2.8466 2.6462 35 1 1.5001 -2.3088 3.3985 36 1 0.9511 -4.5683 1.7947 37 1 1.8438 -7.3846 5.6117 38 1 3.9903 -1.4819 0.8946 39 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755552030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = 83.185652 kcal Electronic energy + Delta-G solvation = -21998.745484 eV Core-core repulsion = 18561.145131 eV Total energy + Delta-G solvation = -3437.600352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.25043 -39.87295 -37.70347 -35.29648 -34.85631 -34.78226 -33.11469 -31.43519 -30.10880 -27.01017 -26.29147 -25.07467 -24.26290 -22.66377 -21.29111 -21.09754 -19.48763 -19.37284 -18.83860 -17.86279 -17.39932 -16.09719 -15.76181 -15.26424 -15.07658 -14.37914 -14.08264 -13.96926 -13.67094 -13.45405 -13.06943 -12.65968 -12.34624 -12.26922 -12.00085 -11.68961 -11.67916 -11.47798 -11.10539 -11.06570 -10.91546 -10.83864 -10.70269 -10.44979 -10.21219 -10.12792 -9.95308 -9.45960 -9.24057 -8.88755 -7.28378 -5.77874 -3.13052 0.43340 0.99398 2.40955 2.72946 3.10547 3.18396 3.35759 3.38769 3.45152 3.67143 4.42611 4.55365 4.57952 4.97423 5.02495 5.06816 5.31824 5.39822 5.54126 5.58798 5.72060 5.82027 5.94236 6.01478 6.09271 6.18908 6.28227 6.33788 6.41185 6.55244 6.60160 6.73483 7.01235 7.14595 7.34185 7.77827 7.98326 8.06207 8.40715 9.18779 9.91300 10.10168 11.40174 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016877 B = 0.004208 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.650436 B = 6651.705252 C = 7803.237055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.191 3.809 5 H 0.060 0.940 6 C -0.141 4.141 7 C 0.119 3.881 8 N -0.707 5.707 9 C 0.598 3.402 10 O -0.507 6.507 11 C -0.037 4.037 12 C 0.038 3.962 13 N -0.355 5.355 14 O 0.340 5.660 15 N -0.323 5.323 16 N -0.747 5.747 17 C -0.238 4.238 18 H 0.094 0.906 19 C 0.007 3.993 20 N -0.932 5.932 21 Si 0.878 3.122 22 H -0.285 1.285 23 H -0.278 1.278 24 H -0.292 1.292 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.029 0.971 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.228 0.772 38 H 0.360 0.640 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.889 -14.787 -0.773 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.132 4.132 3 C -0.198 4.198 4 C 0.081 3.919 5 H 0.078 0.922 6 C -0.180 4.180 7 C -0.003 4.003 8 N -0.358 5.358 9 C 0.379 3.621 10 O -0.380 6.380 11 C -0.202 4.202 12 C -0.148 4.148 13 N -0.079 5.079 14 O 0.114 5.886 15 N -0.044 5.044 16 N -0.389 5.389 17 C -0.368 4.368 18 H 0.112 0.888 19 C -0.189 4.189 20 N -0.580 5.580 21 Si 0.709 3.291 22 H -0.211 1.211 23 H -0.204 1.204 24 H -0.219 1.219 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.240 0.760 37 H 0.245 0.755 38 H 0.193 0.807 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.950 -14.937 -0.659 20.449 hybrid contribution 1.092 -0.585 -0.329 1.281 sum -12.859 -15.522 -0.988 20.180 Atomic orbital electron populations 1.21939 0.96872 1.00638 1.01067 1.21738 0.93552 0.98019 0.99862 1.21837 1.04475 0.94397 0.99105 1.20164 0.84729 0.90915 0.96114 0.92236 1.22211 1.01331 0.98300 0.96148 1.21647 1.01235 0.78186 0.99189 1.46004 1.56527 1.13930 1.19347 1.16491 0.80335 0.81342 0.83896 1.90900 1.39412 1.73476 1.34196 1.26397 1.02190 0.99616 0.92046 1.27782 0.98937 0.85655 1.02431 1.75074 1.12177 1.24169 0.96431 1.85081 1.55273 1.22595 1.25622 1.75376 1.12857 0.93943 1.22247 1.42839 1.00499 1.20720 1.74887 1.19045 0.89286 0.96204 1.32227 0.88812 1.24643 0.96211 0.97036 1.01042 1.69690 1.07027 1.29646 1.51644 0.86654 0.79946 0.83539 0.78979 1.21132 1.20436 1.21871 0.93057 0.93617 0.93254 0.92298 0.89278 0.95147 0.93797 0.90752 0.91522 0.89613 0.90581 0.76050 0.75533 0.80736 0.93089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.85 37.16 0.33 -1.52 16 2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.98 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.22 16 4 C 0.19 3.23 2.02 -67.93 -0.14 3.09 16 5 H 0.06 1.08 8.08 -51.92 -0.42 0.66 16 6 C -0.14 -1.85 4.65 -26.73 -0.12 -1.98 16 7 C 0.12 1.69 5.56 -4.04 -0.02 1.67 16 8 N -0.71 -8.46 5.55 -61.11 -0.34 -8.80 16 9 C 0.60 7.88 7.85 -12.13 -0.10 7.79 16 10 O -0.51 -8.41 17.05 5.36 0.09 -8.32 16 11 C -0.04 -0.39 7.56 -80.07 -0.61 -1.00 16 12 C 0.04 0.34 12.63 -14.29 -0.18 0.16 16 13 N -0.36 -3.35 12.22 30.71 0.38 -2.97 16 14 O 0.34 3.22 11.65 27.27 0.32 3.54 16 15 N -0.32 -3.26 12.13 33.49 0.41 -2.86 16 16 N -0.75 -16.01 4.26 -53.43 -0.23 -16.23 16 17 C -0.24 -6.21 8.05 -15.06 -0.12 -6.33 16 18 H 0.09 2.64 7.63 -52.49 -0.40 2.24 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 20 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 21 Si 0.88 21.63 27.74 -169.99 -4.72 16.91 16 22 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.41 6.51 56.52 0.37 -6.04 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.09 1.93 6.01 -51.93 -0.31 1.62 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 32 H 0.07 0.80 6.17 -51.93 -0.32 0.48 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.48 7.75 -51.93 -0.40 1.07 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.40 3.89 8.33 -40.82 -0.34 3.55 16 37 H 0.23 1.36 8.06 -52.49 -0.42 0.93 16 38 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -30.84 328.22 -4.67 -35.51 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.30 Total: 8.25 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: -0.99 Total: -2.24 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.99 Total: -58.59 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: 0.41 Total: -4.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.72 Total: 16.91 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.84 -4.67 -35.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.692 kcal (2) G-P(sol) polarization free energy of solvation -30.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds