Wall clock time and date at job start Tue Mar 31 2020 05:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46501 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.36935 * 120.00134 * 85.10227 * 4 3 2 6 6 H 1.07995 * 119.99947 * 325.32176 * 5 4 3 7 7 C 1.38809 * 120.00403 * 145.31899 * 5 4 3 8 8 N 1.31627 * 119.99787 * 337.74982 * 7 5 4 9 9 Si 1.86798 * 120.00371 * 157.74662 * 7 5 4 10 10 H 1.48499 * 109.47046 * 60.00129 * 9 7 5 11 11 H 1.48504 * 109.47515 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47136 * 300.00212 * 9 7 5 13 13 C 1.46505 * 119.99936 * 265.09613 * 4 3 2 14 14 C 1.50704 * 109.46783 * 90.00307 * 13 4 3 15 15 C 1.33637 * 122.74514 * 95.02121 * 14 13 4 16 16 S 1.76201 * 107.91926 * 179.97438 * 15 14 13 17 17 C 1.70969 * 90.28505 * 0.02562 * 16 15 14 18 18 C 1.50702 * 124.91936 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47348 * 239.97618 * 18 17 16 20 20 C 1.52998 * 109.46993 * 359.97438 * 18 17 16 21 21 C 1.53001 * 109.46851 * 119.97448 * 18 17 16 22 22 N 1.29024 * 110.16843 * 359.73290 * 17 16 15 23 23 H 1.08999 * 109.46906 * 299.99771 * 1 2 3 24 24 H 1.09004 * 109.46958 * 59.99502 * 1 2 3 25 25 H 1.09000 * 109.47238 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.46885 * 240.00376 * 2 1 3 27 27 H 1.08996 * 109.47571 * 120.00477 * 2 1 3 28 28 H 1.09004 * 109.47514 * 300.00158 * 3 2 1 29 29 H 1.08999 * 109.46947 * 60.00254 * 3 2 1 30 30 H 0.97000 * 119.99740 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46926 * 210.00323 * 13 4 3 32 32 H 1.08995 * 109.46840 * 330.00513 * 13 4 3 33 33 H 1.07994 * 126.04279 * 0.02562 * 15 14 13 34 34 H 1.08993 * 109.46837 * 60.00330 * 19 18 17 35 35 H 1.09006 * 109.46967 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47008 * 299.99962 * 19 18 17 37 37 H 1.08999 * 109.47218 * 59.99375 * 20 18 17 38 38 H 1.09000 * 109.47342 * 180.02562 * 20 18 17 39 39 H 1.09003 * 109.47190 * 299.99827 * 20 18 17 40 40 H 1.09006 * 109.47089 * 60.00461 * 21 18 17 41 41 H 1.09006 * 109.47074 * 180.02562 * 21 18 17 42 42 H 1.09001 * 109.47647 * 300.00364 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1893 1.3413 -1.1825 6 1 3.7928 0.7385 -1.9860 7 6 5.3923 2.0136 -1.3477 8 7 5.6693 3.0606 -0.5996 9 14 6.6184 1.4326 -2.6317 10 1 5.9900 1.4860 -3.9761 11 1 7.8143 2.3127 -2.6084 12 1 7.0260 0.0365 -2.3309 13 6 4.2381 1.5506 1.2632 14 6 4.4895 0.1720 1.8177 15 6 5.6259 -0.4975 1.6027 16 16 5.5028 -2.0520 2.4230 17 6 3.9353 -1.6474 2.9728 18 6 3.0635 -2.5352 3.8230 19 6 1.7610 -2.8351 3.0784 20 6 3.7986 -3.8454 4.1126 21 6 2.7459 -1.8264 5.1412 22 7 3.6087 -0.4699 2.5586 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 6.5102 3.5302 -0.7149 31 1 5.1904 2.0515 1.0891 32 1 3.6493 2.1273 1.9764 33 1 6.4708 -0.1472 1.0284 34 1 1.9873 -3.3400 2.1394 35 1 1.1302 -3.4768 3.6937 36 1 1.2373 -1.9017 2.8721 37 1 4.7265 -3.6318 4.6430 38 1 3.1679 -4.4877 4.7272 39 1 4.0249 -4.3503 3.1735 40 1 2.2221 -0.8930 4.9349 41 1 2.1156 -2.4687 5.7565 42 1 3.6738 -1.6127 5.6718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058912629.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:45 Heat of formation + Delta-G solvation = 40.602001 kcal Electronic energy + Delta-G solvation = -21130.596624 eV Core-core repulsion = 18237.442921 eV Total energy + Delta-G solvation = -2893.153704 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.39855 -36.78998 -35.63049 -32.92693 -30.87508 -29.35827 -27.38910 -27.17985 -26.20789 -25.52997 -24.22710 -22.02342 -20.18764 -19.47620 -18.72488 -17.15882 -16.27071 -15.33100 -14.79634 -14.60593 -14.23143 -13.95849 -13.80185 -13.52915 -13.31168 -12.96394 -12.78994 -12.36529 -12.16518 -12.05506 -11.63096 -11.54003 -11.45045 -11.25846 -11.09043 -10.98856 -10.89420 -10.88340 -10.70987 -10.44101 -10.31421 -10.08145 -9.92111 -9.61357 -8.93260 -8.66389 -8.51722 -7.96723 -6.64797 -5.85023 -3.37426 1.44650 2.03640 2.44414 3.32720 3.39401 3.42147 3.62405 4.38311 4.45770 4.89041 4.96904 5.19597 5.28981 5.55150 5.57082 5.64858 5.71287 5.77518 5.79328 5.85243 5.86921 5.96246 6.03735 6.12026 6.14296 6.18242 6.33501 6.35862 6.37581 6.40178 6.56150 6.69367 6.74435 6.91373 7.04981 7.10445 7.31575 7.55371 7.78311 8.43728 8.58207 9.13419 9.77010 10.34781 11.15591 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017070 B = 0.006628 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.930342 B = 4223.258912 C = 5161.181846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.147 4.147 3 C 0.153 3.847 4 N -0.571 5.571 5 C -0.251 4.251 6 H 0.060 0.940 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.207 3.793 14 C 0.073 3.927 15 C -0.241 4.241 16 S 0.045 5.955 17 C 0.048 3.952 18 C 0.016 3.984 19 C -0.132 4.132 20 C -0.150 4.150 21 C -0.131 4.131 22 N -0.452 5.452 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.257 0.743 31 H 0.115 0.885 32 H 0.041 0.959 33 H 0.167 0.833 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 -10.816 9.353 14.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.027 3.973 4 N -0.289 5.289 5 C -0.380 4.380 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.722 3.278 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.209 1.209 13 C 0.077 3.923 14 C -0.059 4.059 15 C -0.380 4.380 16 S 0.299 5.701 17 C -0.232 4.232 18 C 0.012 3.988 19 C -0.191 4.191 20 C -0.208 4.208 21 C -0.190 4.190 22 N -0.167 5.167 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.059 0.941 33 H 0.184 0.816 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.023 -11.259 9.547 15.300 hybrid contribution 0.713 0.361 -1.217 1.456 sum -3.310 -10.898 8.330 14.111 Atomic orbital electron populations 1.21695 0.97561 1.00093 1.00802 1.22156 0.93569 1.01051 1.01890 1.20878 0.84661 0.93154 0.98640 1.43736 0.99642 1.83781 1.01740 1.19007 1.03584 1.22803 0.92652 0.92232 1.25071 1.00601 0.94951 0.98310 1.69945 1.24143 1.16906 1.41886 0.86514 0.81046 0.78396 0.81824 1.20601 1.21467 1.20924 1.19810 1.01028 0.85870 0.85581 1.21968 0.87771 1.01982 0.94193 1.26810 1.05061 0.96149 1.09968 1.83527 1.17146 1.20971 1.48486 1.26843 0.96606 0.96037 1.03674 1.19091 0.93683 0.92345 0.93721 1.21813 0.95253 1.02325 0.99659 1.21980 1.00434 0.96098 1.02253 1.21807 1.01563 1.00867 0.94751 1.66080 1.33017 1.05814 1.11743 0.93427 0.93541 0.94088 0.93310 0.91405 0.93962 0.94558 0.93313 0.86801 0.94078 0.81563 0.92702 0.92304 0.91341 0.92043 0.91387 0.92014 0.91444 0.92266 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.91 37.16 0.37 -1.91 16 2 C -0.15 -2.88 6.23 -26.73 -0.17 -3.05 16 3 C 0.15 3.36 5.72 -4.04 -0.02 3.34 16 4 N -0.57 -14.25 2.44 -174.61 -0.43 -14.67 16 5 C -0.25 -6.77 9.48 -15.06 -0.14 -6.91 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 8 N -0.89 -24.72 11.32 55.49 0.63 -24.09 16 9 Si 0.89 21.24 29.61 -169.99 -5.03 16.21 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.21 4.96 5.77 -5.19 -0.03 4.93 16 14 C 0.07 1.58 6.24 -84.22 -0.53 1.06 16 15 C -0.24 -4.94 11.11 29.12 0.32 -4.61 16 16 S 0.04 0.75 21.57 -107.50 -2.32 -1.57 16 17 C 0.05 0.80 5.78 -13.46 -0.08 0.72 16 18 C 0.02 0.20 0.99 -155.66 -0.15 0.05 16 19 C -0.13 -1.65 8.45 37.16 0.31 -1.33 16 20 C -0.15 -1.59 7.54 37.16 0.28 -1.31 16 21 C -0.13 -1.55 8.45 37.16 0.31 -1.23 16 22 N -0.45 -8.87 9.06 -8.06 -0.07 -8.94 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 27 H 0.07 1.39 6.54 -51.93 -0.34 1.05 16 28 H 0.04 0.94 8.08 -51.93 -0.42 0.53 16 29 H 0.04 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.11 2.99 5.29 -51.93 -0.27 2.72 16 32 H 0.04 0.97 7.86 -51.93 -0.41 0.56 16 33 H 0.17 3.49 8.06 -52.49 -0.42 3.07 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.64 7.92 -51.93 -0.41 0.23 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -28.14 351.26 -8.83 -36.97 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.30 Total: 0.88 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 0.39 Total: -10.07 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.13 Total: -47.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.32 Total: -1.57 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.14 -8.83 -36.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058912629.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.570 kcal (2) G-P(sol) polarization free energy of solvation -28.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds