Wall clock time and date at job start Tue Mar 31 2020 05:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99658 * 90.00121 * 10 9 7 12 12 C 1.52998 * 109.47482 * 90.00117 * 11 10 9 13 13 N 1.46904 * 109.47570 * 179.97438 * 12 11 10 14 14 C 1.47013 * 110.99462 * 293.63177 * 13 12 11 15 15 C 1.53101 * 109.25188 * 177.60480 * 14 13 12 16 16 O 1.43012 * 109.25769 * 56.84929 * 15 14 13 17 17 C 1.43008 * 113.74141 * 301.32639 * 16 15 14 18 18 C 1.47008 * 110.99951 * 169.99657 * 13 12 11 19 19 C 1.34775 * 120.00337 * 269.99986 * 10 9 7 20 20 O 1.21285 * 119.99996 * 359.97438 * 19 10 9 21 21 C 1.50698 * 120.00318 * 180.02562 * 19 10 9 22 22 C 1.52996 * 117.49731 * 248.74733 * 21 19 10 23 23 C 1.52995 * 117.50098 * 180.08721 * 21 19 10 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.08998 * 109.46888 * 209.99779 * 11 10 9 28 28 H 1.08994 * 109.47490 * 329.99842 * 11 10 9 29 29 H 1.09005 * 109.46883 * 300.00131 * 12 11 10 30 30 H 1.09005 * 109.47362 * 59.99236 * 12 11 10 31 31 H 1.08991 * 109.50870 * 297.53693 * 14 13 12 32 32 H 1.09006 * 109.50611 * 57.67924 * 14 13 12 33 33 H 1.09006 * 109.50564 * 296.91234 * 15 14 13 34 34 H 1.09001 * 109.54111 * 176.80975 * 15 14 13 35 35 H 1.09000 * 109.51118 * 298.73813 * 17 16 15 36 36 H 1.09003 * 109.54626 * 178.62420 * 17 16 15 37 37 H 1.09003 * 109.50962 * 302.32525 * 18 13 12 38 38 H 1.09002 * 109.50794 * 62.41817 * 18 13 12 39 39 H 1.09003 * 115.54878 * 34.41018 * 21 19 10 40 40 H 1.08999 * 117.49988 * 359.97438 * 22 21 19 41 41 H 1.09007 * 117.50350 * 145.01809 * 22 21 19 42 42 H 1.09006 * 117.49603 * 214.97518 * 23 21 19 43 43 H 1.08998 * 117.50095 * 359.97387 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.2443 -3.2657 -1.2689 12 6 5.6895 -3.0253 -1.7100 13 7 5.9349 -3.7180 -2.9820 14 6 5.8670 -5.1764 -2.8093 15 6 6.0686 -5.8554 -4.1666 16 8 7.3162 -5.4337 -4.7243 17 6 7.4164 -4.0189 -4.9067 18 6 7.2285 -3.3212 -3.5569 19 6 4.2238 -3.2111 1.1670 20 8 4.0218 -2.6395 2.2175 21 6 4.7266 -4.6317 1.1669 22 6 3.7696 -5.7198 1.6579 23 6 4.9596 -5.2988 2.5239 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 4.0772 -4.3349 -1.1389 28 1 3.5639 -2.8814 -2.0287 29 1 5.8566 -1.9560 -1.8400 30 1 6.3700 -3.4096 -0.9502 31 1 6.6489 -5.4983 -2.1216 32 1 4.8917 -5.4502 -2.4067 33 1 5.2566 -5.5754 -4.8378 34 1 6.0756 -6.9375 -4.0355 35 1 6.6437 -3.6854 -5.5994 36 1 8.3984 -3.7719 -5.3104 37 1 7.2472 -2.2407 -3.7000 38 1 8.0321 -3.6128 -2.8807 39 1 5.4079 -4.8893 0.3559 40 1 2.7766 -5.4081 1.9815 41 1 3.8215 -6.6933 1.1703 42 1 5.7939 -5.9956 2.6056 43 1 4.7496 -4.7101 3.4168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060855790.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:17 Heat of formation + Delta-G solvation = -40.996066 kcal Electronic energy + Delta-G solvation = -23101.018810 eV Core-core repulsion = 19761.573878 eV Total energy + Delta-G solvation = -3339.444932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.90527 -39.30820 -36.57119 -35.86018 -34.63286 -32.56365 -31.40018 -29.87928 -28.18848 -26.04145 -24.38043 -24.13571 -22.38899 -22.21465 -21.34403 -20.50671 -18.32586 -17.13355 -16.94308 -16.56539 -16.24108 -15.68314 -15.29751 -15.15882 -14.85546 -14.73232 -14.20874 -14.10397 -13.55648 -13.41021 -13.13493 -12.54277 -12.43375 -12.17609 -11.98288 -11.70496 -11.60591 -11.47758 -11.40883 -11.06585 -10.82842 -10.64406 -10.55091 -10.42519 -10.25172 -10.12046 -9.86834 -9.54353 -9.05241 -8.59374 -8.53990 -7.76710 -6.08691 -4.07270 3.07508 3.26591 3.33488 3.38666 3.42545 3.67182 3.88447 4.18383 4.39592 4.67490 4.78366 4.82742 4.89393 4.95217 4.97622 5.06610 5.08853 5.17160 5.23557 5.30329 5.34812 5.42073 5.44920 5.55967 5.61414 5.69014 5.69947 5.76871 5.83052 5.98919 6.12084 6.24101 6.28411 6.64407 6.79163 6.81785 6.93902 6.95765 7.33174 7.60510 8.21911 8.46676 8.92040 8.97658 9.51567 11.04765 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013446 B = 0.005430 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.892812 B = 5155.586806 C = 6570.587270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.264 1.264 7 C -0.527 4.527 8 H 0.075 0.925 9 C 0.216 3.784 10 N -0.588 5.588 11 C 0.119 3.881 12 C 0.037 3.963 13 N -0.532 5.532 14 C 0.012 3.988 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.064 3.936 18 C 0.018 3.982 19 C 0.537 3.463 20 O -0.538 6.538 21 C -0.191 4.191 22 C -0.153 4.153 23 C -0.153 4.153 24 H 0.264 0.736 25 H 0.026 0.974 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.041 0.959 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.756 -11.839 -7.438 20.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.096 3.904 10 N -0.319 5.319 11 C -0.006 4.006 12 C -0.091 4.091 13 N -0.258 5.258 14 C -0.116 4.116 15 C -0.013 4.013 16 O -0.307 6.307 17 C -0.013 4.013 18 C -0.110 4.110 19 C 0.324 3.676 20 O -0.416 6.416 21 C -0.212 4.212 22 C -0.191 4.191 23 C -0.190 4.190 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.250 -11.359 -7.260 19.616 hybrid contribution 0.737 0.928 0.493 1.284 sum 14.987 -10.430 -6.767 19.473 Atomic orbital electron populations 1.69895 1.06187 1.26966 1.50517 1.24845 0.94749 0.98893 0.94458 0.86879 0.80627 0.83924 0.78519 1.20061 1.20931 1.18908 1.21308 0.89121 0.94833 1.51295 0.90738 1.19679 0.95798 0.77624 0.97305 1.47766 1.64038 1.15826 1.04227 1.21371 0.94790 0.97287 0.87165 1.22667 0.97883 0.99727 0.88856 1.62120 1.31201 1.05838 1.26620 1.22884 1.02440 0.88307 0.97940 1.22677 0.86480 0.98946 0.93231 1.87961 1.36702 1.22535 1.83526 1.22660 1.02255 0.80729 0.95626 1.22782 0.90266 1.01256 0.96717 1.19446 0.77782 0.86482 0.83924 1.90660 1.52333 1.67454 1.31119 1.22284 1.05384 0.93178 1.00366 1.22905 0.96000 0.97221 1.02970 1.22908 0.99695 1.02148 0.94276 0.92570 0.95643 0.94179 0.91134 0.88834 0.90017 0.94673 0.94023 0.89032 0.92018 0.88533 0.92080 0.88608 0.89467 0.94070 0.86873 0.88036 0.88270 0.88533 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.57 27.47 -169.99 -4.67 16.91 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.53 -15.14 9.94 -34.44 -0.34 -15.49 16 8 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 9 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 10 N -0.59 -12.03 2.46 -175.06 -0.43 -12.46 16 11 C 0.12 1.88 4.98 -4.04 -0.02 1.86 16 12 C 0.04 0.50 5.17 -3.82 -0.02 0.48 16 13 N -0.53 -6.21 4.73 -234.30 -1.11 -7.32 16 14 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 15 C 0.06 0.59 7.01 37.21 0.26 0.86 16 16 O -0.39 -4.25 10.83 -35.23 -0.38 -4.63 16 17 C 0.06 0.60 7.01 37.21 0.26 0.86 16 18 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 19 C 0.54 11.06 7.46 -10.99 -0.08 10.98 16 20 O -0.54 -13.44 15.84 5.55 0.09 -13.36 16 21 C -0.19 -2.86 4.79 -91.78 -0.44 -3.30 16 22 C -0.15 -2.03 10.24 -26.70 -0.27 -2.30 16 23 C -0.15 -2.03 10.05 -26.70 -0.27 -2.30 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.03 0.58 7.50 -51.93 -0.39 0.19 16 26 H 0.04 1.06 6.48 -51.93 -0.34 0.72 16 27 H 0.07 0.98 5.02 -51.93 -0.26 0.72 16 28 H 0.09 1.62 8.07 -51.93 -0.42 1.20 16 29 H 0.08 1.16 8.04 -51.93 -0.42 0.74 16 30 H 0.04 0.46 7.43 -51.93 -0.39 0.08 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.88 6.38 -51.93 -0.33 0.55 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 38 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.11 1.42 6.48 -51.93 -0.34 1.09 16 40 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.11 1.62 7.67 -51.93 -0.40 1.23 16 LS Contribution 344.24 15.07 5.19 5.19 Total: -1.00 -34.10 344.24 -8.71 -42.82 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.09 Total: 0.60 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.08 Total: -0.81 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.76 Total: -46.72 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.29 Total: -17.99 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.10 -8.71 -42.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060855790.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.821 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds