Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 H 1.09006 * 109.46748 * 179.82548 * 3 2 1 5 5 C 1.50695 * 109.47433 * 299.83096 * 3 2 1 6 6 H 1.07997 * 120.00426 * 120.00444 * 5 3 2 7 7 C 1.37875 * 120.00011 * 299.99560 * 5 3 2 8 8 N 1.31522 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00365 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46843 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46866 * 120.00208 * 9 7 5 12 12 H 1.48496 * 109.47392 * 240.00602 * 9 7 5 13 13 N 1.46908 * 109.46836 * 59.83016 * 3 2 1 14 14 C 1.46903 * 110.99630 * 85.92954 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54916 * 14 13 3 16 16 C 1.33632 * 126.04289 * 89.68874 * 15 14 13 17 17 N 1.31777 * 114.50232 * 179.78683 * 16 15 14 18 18 C 1.29028 * 117.12397 * 0.52347 * 17 16 15 19 19 C 1.50700 * 124.91374 * 179.75246 * 18 17 16 20 20 C 1.52996 * 109.47513 * 59.95851 * 19 18 17 21 21 C 1.52998 * 109.46962 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.47276 * 299.95456 * 19 18 17 23 23 S 1.70970 * 110.16824 * 359.71287 * 18 17 16 24 24 H 1.09005 * 109.47498 * 55.58447 * 1 2 3 25 25 H 1.08996 * 109.47175 * 295.58732 * 1 2 3 26 26 H 1.09002 * 109.47521 * 175.59043 * 1 2 3 27 27 H 1.08998 * 109.47193 * 120.00588 * 2 1 3 28 28 H 1.08997 * 109.46518 * 240.00458 * 2 1 3 29 29 H 0.96996 * 119.99818 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99736 * 209.87875 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.54080 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.54768 * 14 13 3 33 33 H 1.08008 * 122.74801 * 359.97373 * 16 15 14 34 34 H 1.08997 * 109.47431 * 59.99359 * 20 19 18 35 35 H 1.09004 * 109.47362 * 179.97438 * 20 19 18 36 36 H 1.09009 * 109.47074 * 299.99433 * 20 19 18 37 37 H 1.09001 * 109.47457 * 59.99551 * 21 19 18 38 38 H 1.08995 * 109.47375 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.47354 * 299.99675 * 21 19 18 40 40 H 1.08994 * 109.46871 * 60.00329 * 22 19 18 41 41 H 1.08995 * 109.47163 * 180.02562 * 22 19 18 42 42 H 1.09006 * 109.47017 * 300.00389 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0031 5 6 1.5411 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1360 7 6 1.8778 1.6795 -2.4833 8 7 2.6339 0.6098 -2.6009 9 14 1.2588 2.5582 -4.0112 10 1 0.4328 3.7253 -3.6105 11 1 2.4159 3.0245 -4.8169 12 1 0.4364 1.6237 -4.8207 13 7 1.5469 2.1361 1.1975 14 6 2.4393 1.9093 2.3421 15 6 1.9632 2.7215 3.5188 16 6 1.0909 2.3216 4.4489 17 7 0.8386 3.2168 5.3824 18 6 1.4415 4.3535 5.2858 19 6 1.2788 5.5008 6.2492 20 6 1.7022 5.0544 7.6501 21 6 2.1550 6.6719 5.8002 22 6 -0.1863 5.9411 6.2753 23 16 2.4526 4.3691 3.9072 24 1 -0.3634 0.5808 -0.8478 25 1 -0.3633 0.4438 0.9268 26 1 -0.3634 -1.0246 -0.0790 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 2.8704 0.2774 -3.4809 30 1 1.4287 3.1225 1.0210 31 1 2.4323 0.8514 2.6042 32 1 3.4527 2.2115 2.0782 33 1 0.6327 1.3436 4.4381 34 1 2.7459 4.7407 7.6316 35 1 1.5849 5.8845 8.3469 36 1 1.0776 4.2202 7.9699 37 1 1.8532 6.9898 4.8023 38 1 2.0370 7.5019 6.4968 39 1 3.1988 6.3585 5.7815 40 1 -0.8107 5.1069 6.5950 41 1 -0.3038 6.7712 6.9718 42 1 -0.4879 6.2591 5.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062839074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = 20.487432 kcal Electronic energy + Delta-G solvation = -19979.025116 eV Core-core repulsion = 17084.999179 eV Total energy + Delta-G solvation = -2894.025937 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.74445 -37.04851 -36.17078 -33.06352 -31.11177 -29.35053 -27.62432 -27.42957 -26.65420 -25.27125 -23.32097 -22.90072 -20.97599 -19.09985 -18.58328 -17.57300 -16.48660 -15.47014 -14.99333 -14.79517 -14.35761 -14.16018 -13.97943 -13.86706 -13.45254 -13.24480 -12.74505 -12.42130 -12.38350 -12.31252 -11.86976 -11.84267 -11.74679 -11.37916 -11.20186 -11.13474 -10.98718 -10.91135 -10.74013 -10.43044 -10.11685 -9.80918 -9.45446 -9.35628 -9.04100 -8.83231 -8.55801 -8.48600 -7.33186 -6.05673 -4.11388 0.92574 1.52401 1.98002 3.06208 3.26336 3.34834 3.38683 4.04104 4.37698 4.61944 4.72094 4.90370 5.20693 5.25825 5.30497 5.37326 5.42585 5.43328 5.55683 5.62946 5.66144 5.70264 5.78013 5.89208 6.07897 6.11485 6.12566 6.21128 6.44506 6.51857 6.65940 6.82956 7.20540 7.24049 7.44714 7.70995 7.74827 7.79560 7.93603 8.20430 8.31656 8.58039 8.96797 9.53648 11.00208 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.003741 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.058412 B = 7483.786054 C = 7916.086428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.002 0.998 5 C -0.513 4.513 6 H 0.060 0.940 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.677 5.677 14 C 0.134 3.866 15 C -0.198 4.198 16 C 0.039 3.961 17 N -0.469 5.469 18 C 0.043 3.957 19 C 0.013 3.987 20 C -0.133 4.133 21 C -0.154 4.154 22 C -0.134 4.134 23 S 0.112 5.888 24 H 0.056 0.944 25 H 0.041 0.959 26 H 0.014 0.986 27 H 0.010 0.990 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.173 0.827 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.329 8.958 16.860 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.551 4.551 6 H 0.078 0.922 7 C -0.138 4.138 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.309 5.309 14 C 0.002 3.998 15 C -0.319 4.319 16 C -0.111 4.111 17 N -0.183 5.183 18 C -0.235 4.235 19 C 0.009 3.991 20 C -0.191 4.191 21 C -0.212 4.212 22 C -0.192 4.192 23 S 0.367 5.633 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.190 0.810 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.358 8.949 16.857 19.088 hybrid contribution 0.054 -0.039 -1.255 1.257 sum -0.304 8.910 15.602 17.970 Atomic orbital electron populations 1.21448 0.97440 0.97465 1.01356 1.21438 0.95103 0.98070 0.99521 1.19201 0.93041 0.91590 0.85390 0.98034 1.21196 1.31689 1.12015 0.90236 0.92229 1.24881 0.94990 0.94992 0.98933 1.69892 1.36645 1.22678 1.23465 0.86515 0.78601 0.79724 0.83044 1.19747 1.21106 1.20950 1.60856 1.48190 1.16110 1.05732 1.20356 0.94151 0.97663 0.87648 1.26215 1.04577 0.97494 1.03608 1.21617 0.98347 1.00360 0.90805 1.66135 1.24186 1.00891 1.27061 1.26898 0.99592 0.97505 0.99522 1.19154 0.97379 0.89728 0.92813 1.21823 1.01629 1.01767 0.93908 1.22019 0.99600 0.97383 1.02159 1.21830 0.93700 1.01534 1.02163 1.83950 1.44261 1.12558 1.22524 0.92509 0.93971 0.96728 0.97148 0.89418 0.92957 0.85141 0.89697 0.94922 0.80958 0.92624 0.91903 0.91533 0.91737 0.90972 0.91878 0.91516 0.91916 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.52 37.16 0.35 -2.32 16 2 C -0.10 -2.45 5.59 -26.73 -0.15 -2.60 16 3 C 0.22 5.24 2.30 -68.86 -0.16 5.08 16 4 H 0.00 0.05 7.71 -51.93 -0.40 -0.35 16 5 C -0.51 -13.57 7.26 -34.44 -0.25 -13.82 16 6 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -24.78 11.32 55.43 0.63 -24.16 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.04 5.64 -109.22 -0.62 -14.65 16 14 C 0.13 2.37 6.07 -4.97 -0.03 2.34 16 15 C -0.20 -3.14 6.06 -35.92 -0.22 -3.36 16 16 C 0.04 0.61 11.25 -19.19 -0.22 0.40 16 17 N -0.47 -7.12 10.53 -11.87 -0.12 -7.24 16 18 C 0.04 0.57 5.78 -13.46 -0.08 0.50 16 19 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 20 C -0.13 -1.20 8.45 37.16 0.31 -0.89 16 21 C -0.15 -1.30 7.54 37.16 0.28 -1.02 16 22 C -0.13 -1.28 8.45 37.16 0.31 -0.97 16 23 S 0.11 1.53 21.57 -107.50 -2.32 -0.78 16 24 H 0.06 1.37 7.07 -51.93 -0.37 1.00 16 25 H 0.04 0.90 7.74 -51.93 -0.40 0.50 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.01 0.22 7.60 -51.93 -0.39 -0.17 16 28 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.33 6.93 8.13 -39.29 -0.32 6.61 16 31 H 0.08 1.49 7.61 -51.93 -0.40 1.10 16 32 H 0.03 0.59 7.94 -51.93 -0.41 0.18 16 33 H 0.17 2.51 8.06 -52.48 -0.42 2.09 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.06 0.57 7.92 -51.93 -0.41 0.16 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 349.31 15.07 5.26 5.26 Total: -1.00 -27.91 349.31 -9.44 -37.36 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.17 Total: 3.34 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -0.09 Total: -15.07 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.11 Total: -46.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.32 Total: -0.78 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.91 -9.44 -37.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062839074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.847 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds