Wall clock time and date at job start Tue Mar 31 2020 05:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47095 * 2 1 4 4 H 1.09006 * 109.46748 * 179.82548 * 3 2 1 5 5 C 1.50695 * 109.47433 * 299.83096 * 3 2 1 6 6 H 1.07997 * 120.00426 * 120.00444 * 5 3 2 7 7 C 1.37875 * 120.00011 * 299.99560 * 5 3 2 8 8 N 1.31522 * 120.00020 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00365 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46843 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46866 * 120.00208 * 9 7 5 12 12 H 1.48496 * 109.47392 * 240.00602 * 9 7 5 13 13 N 1.46908 * 109.46836 * 59.83016 * 3 2 1 14 14 C 1.46903 * 110.99630 * 85.92954 * 13 3 2 15 15 C 1.50704 * 109.46626 * 175.54916 * 14 13 3 16 16 C 1.33632 * 126.04289 * 89.68874 * 15 14 13 17 17 N 1.31777 * 114.50232 * 179.78683 * 16 15 14 18 18 C 1.29028 * 117.12397 * 0.52347 * 17 16 15 19 19 C 1.50700 * 124.91374 * 179.75246 * 18 17 16 20 20 C 1.52996 * 109.47513 * 59.95851 * 19 18 17 21 21 C 1.52998 * 109.46962 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.47276 * 299.95456 * 19 18 17 23 23 S 1.70970 * 110.16824 * 359.71287 * 18 17 16 24 24 H 1.09005 * 109.47498 * 55.58447 * 1 2 3 25 25 H 1.08996 * 109.47175 * 295.58732 * 1 2 3 26 26 H 1.09002 * 109.47521 * 175.59043 * 1 2 3 27 27 H 1.08998 * 109.47193 * 120.00588 * 2 1 3 28 28 H 1.08997 * 109.46518 * 240.00458 * 2 1 3 29 29 H 0.96996 * 119.99818 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99736 * 209.87875 * 13 3 2 31 31 H 1.08994 * 109.46864 * 295.54080 * 14 13 3 32 32 H 1.08994 * 109.47486 * 55.54768 * 14 13 3 33 33 H 1.08008 * 122.74801 * 359.97373 * 16 15 14 34 34 H 1.08997 * 109.47431 * 59.99359 * 20 19 18 35 35 H 1.09004 * 109.47362 * 179.97438 * 20 19 18 36 36 H 1.09009 * 109.47074 * 299.99433 * 20 19 18 37 37 H 1.09001 * 109.47457 * 59.99551 * 21 19 18 38 38 H 1.08995 * 109.47375 * 179.97438 * 21 19 18 39 39 H 1.09004 * 109.47354 * 299.99675 * 21 19 18 40 40 H 1.08994 * 109.46871 * 60.00329 * 22 19 18 41 41 H 1.08995 * 109.47163 * 180.02562 * 22 19 18 42 42 H 1.09006 * 109.47017 * 300.00389 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0031 5 6 1.5411 2.1517 -1.2325 6 1 0.9200 3.0299 -1.1360 7 6 1.8778 1.6795 -2.4833 8 7 2.6339 0.6098 -2.6009 9 14 1.2588 2.5582 -4.0112 10 1 0.4328 3.7253 -3.6105 11 1 2.4159 3.0245 -4.8169 12 1 0.4364 1.6237 -4.8207 13 7 1.5469 2.1361 1.1975 14 6 2.4393 1.9093 2.3421 15 6 1.9632 2.7215 3.5188 16 6 1.0909 2.3216 4.4489 17 7 0.8386 3.2168 5.3824 18 6 1.4415 4.3535 5.2858 19 6 1.2788 5.5008 6.2492 20 6 1.7022 5.0544 7.6501 21 6 2.1550 6.6719 5.8002 22 6 -0.1863 5.9411 6.2753 23 16 2.4526 4.3691 3.9072 24 1 -0.3634 0.5808 -0.8478 25 1 -0.3633 0.4438 0.9268 26 1 -0.3634 -1.0246 -0.0790 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8900 29 1 2.8704 0.2774 -3.4809 30 1 1.4287 3.1225 1.0210 31 1 2.4323 0.8514 2.6042 32 1 3.4527 2.2115 2.0782 33 1 0.6327 1.3436 4.4381 34 1 2.7459 4.7407 7.6316 35 1 1.5849 5.8845 8.3469 36 1 1.0776 4.2202 7.9699 37 1 1.8532 6.9898 4.8023 38 1 2.0370 7.5019 6.4968 39 1 3.1988 6.3585 5.7815 40 1 -0.8107 5.1069 6.5950 41 1 -0.3038 6.7712 6.9718 42 1 -0.4879 6.2591 5.2772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062839074.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:59 Heat of formation + Delta-G solvation = 4.888983 kcal Electronic energy + Delta-G solvation = -19979.701515 eV Core-core repulsion = 17084.999179 eV Total energy + Delta-G solvation = -2894.702336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.86158 -38.38367 -37.49483 -34.83132 -32.95557 -30.84180 -28.39322 -28.26144 -28.15488 -26.71678 -25.13023 -24.37453 -21.98169 -20.99479 -19.73343 -18.66879 -18.32949 -17.00003 -16.50643 -15.93103 -15.69546 -15.47007 -15.28749 -15.22184 -14.76030 -14.44216 -14.25542 -14.01437 -13.68651 -13.23164 -13.08735 -13.04546 -12.85458 -12.68413 -12.59758 -12.44417 -12.35028 -12.19379 -11.95676 -11.90000 -11.85490 -11.65203 -11.33835 -10.82256 -10.57903 -10.49410 -10.19646 -9.73140 -9.07383 -8.11228 -6.23415 -0.22913 0.39457 0.83334 1.40001 1.43120 1.53411 1.88495 2.41862 3.08866 3.17777 3.68652 3.82990 3.93671 3.97939 4.09073 4.23420 4.40841 4.58333 4.70322 4.71708 4.75778 4.78260 4.86483 4.87908 4.94994 4.97774 4.98323 5.03244 5.15938 5.28765 5.29468 5.37585 5.38355 5.43078 5.54057 5.69841 5.80002 5.86821 6.26448 6.41935 6.71601 6.79391 6.96755 7.45291 8.93930 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027150 B = 0.003741 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.058412 B = 7483.786054 C = 7916.086428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.099 4.099 3 C 0.221 3.779 4 H -0.030 1.030 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.672 5.672 14 C 0.142 3.858 15 C -0.225 4.225 16 C 0.041 3.959 17 N -0.490 5.490 18 C 0.054 3.946 19 C 0.008 3.992 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.131 4.131 23 S 0.131 5.869 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.085 0.915 32 H 0.027 0.973 33 H 0.178 0.822 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 10.604 18.138 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C 0.113 3.887 4 H -0.013 1.013 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.303 5.303 14 C 0.011 3.989 15 C -0.346 4.346 16 C -0.110 4.110 17 N -0.204 5.204 18 C -0.224 4.224 19 C 0.004 3.996 20 C -0.188 4.188 21 C -0.211 4.211 22 C -0.190 4.190 23 S 0.388 5.612 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.045 0.955 33 H 0.195 0.805 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.951 10.603 18.144 21.037 hybrid contribution 0.253 -0.500 -1.539 1.638 sum -0.698 10.103 16.605 19.449 Atomic orbital electron populations 1.21306 0.96054 0.98345 1.00771 1.21321 0.96216 0.97496 0.98739 1.18986 0.91023 0.92261 0.86410 1.01294 1.21439 1.31479 1.11989 0.91312 0.92632 1.25595 0.95183 0.95633 1.01635 1.70016 1.37578 1.23816 1.24027 0.85574 0.78086 0.78739 0.79658 1.19213 1.20765 1.20759 1.60764 1.48733 1.15656 1.05166 1.20195 0.93294 0.98202 0.87244 1.25962 1.06172 0.98941 1.03556 1.21778 0.97794 1.00763 0.90626 1.66212 1.25279 1.01572 1.27336 1.27660 0.97800 0.97726 0.99262 1.19435 0.98352 0.89144 0.92687 1.21811 1.01088 1.02339 0.93527 1.22044 0.99067 0.97376 1.02580 1.21825 0.92763 1.01945 1.02426 1.83849 1.44037 1.10813 1.22534 0.94615 0.93102 0.94849 0.95841 0.92213 0.92951 0.85350 0.89683 0.95528 0.80509 0.92832 0.89189 0.92897 0.92239 0.88350 0.91868 0.92935 0.89119 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.74 9.52 71.98 0.69 -4.05 16 2 C -0.10 -4.77 5.59 30.59 0.17 -4.60 16 3 C 0.22 10.98 2.30 44.16 0.10 11.09 16 4 H -0.03 -1.68 7.71 -2.38 -0.02 -1.70 16 5 C -0.52 -28.03 7.26 25.60 0.19 -27.84 16 6 H 0.06 2.96 7.60 -2.91 -0.02 2.94 16 7 C 0.02 1.03 5.30 84.65 0.45 1.48 16 8 N -0.91 -51.87 11.32 21.45 0.24 -51.63 16 9 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 10 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.67 -28.07 5.64 -499.46 -2.82 -30.89 16 14 C 0.14 5.09 6.07 85.56 0.52 5.60 16 15 C -0.23 -7.09 6.06 24.64 0.15 -6.94 16 16 C 0.04 1.27 11.25 83.66 0.94 2.21 16 17 N -0.49 -14.45 10.53 -191.45 -2.02 -16.46 16 18 C 0.05 1.36 5.78 88.52 0.51 1.87 16 19 C 0.01 0.14 0.99 -52.93 -0.05 0.09 16 20 C -0.13 -2.02 8.45 71.98 0.61 -1.41 16 21 C -0.15 -2.16 7.54 71.98 0.54 -1.61 16 22 C -0.13 -2.21 8.45 71.98 0.61 -1.60 16 23 S 0.13 3.49 21.57 -56.49 -1.22 2.27 16 24 H 0.03 1.70 7.07 -2.38 -0.02 1.68 16 25 H 0.05 2.12 7.74 -2.39 -0.02 2.10 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.02 1.03 7.60 -2.39 -0.02 1.01 16 28 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 29 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 30 H 0.33 13.88 8.13 -89.69 -0.73 13.15 16 31 H 0.09 3.00 7.61 -2.39 -0.02 2.98 16 32 H 0.03 0.98 7.94 -2.39 -0.02 0.96 16 33 H 0.18 5.08 8.06 -2.91 -0.02 5.06 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -59.66 349.31 1.90 -57.76 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.26 Total: 19.54 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 5.42 Total: -25.73 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -4.59 Total: -98.98 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.22 Total: 2.27 kcal Total: -59.66 1.90 -57.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062839074.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.648 kcal (2) G-P(sol) polarization free energy of solvation -59.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds