Wall clock time and date at job start Tue Mar 31 2020 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47350 * 2 1 4 4 H 1.08995 * 109.47391 * 177.97377 * 3 2 1 5 5 C 1.50697 * 109.46979 * 57.96973 * 3 2 1 6 6 H 1.07996 * 120.00507 * 240.00346 * 5 3 2 7 7 C 1.37883 * 119.99995 * 59.99773 * 5 3 2 8 8 N 1.31519 * 119.99775 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46774 * 90.00769 * 9 7 5 11 11 H 1.48496 * 109.47479 * 210.00633 * 9 7 5 12 12 H 1.48501 * 109.47115 * 330.00592 * 9 7 5 13 13 N 1.46897 * 109.46714 * 297.97219 * 3 2 1 14 14 C 1.46896 * 111.00277 * 273.74653 * 13 3 2 15 15 C 1.50698 * 109.47416 * 174.90559 * 14 13 3 16 16 C 1.33632 * 126.04216 * 89.68737 * 15 14 13 17 17 N 1.31784 * 114.50020 * 179.78673 * 16 15 14 18 18 C 1.29026 * 117.12452 * 0.52298 * 17 16 15 19 19 C 1.50699 * 124.91427 * 179.74537 * 18 17 16 20 20 C 1.53000 * 109.47033 * 59.96491 * 19 18 17 21 21 C 1.53002 * 109.46945 * 179.97438 * 19 18 17 22 22 C 1.52996 * 109.47483 * 299.96121 * 19 18 17 23 23 S 1.70976 * 110.16572 * 359.71394 * 18 17 16 24 24 H 1.08996 * 109.46971 * 174.44947 * 1 2 3 25 25 H 1.08996 * 109.47418 * 54.44460 * 1 2 3 26 26 H 1.09002 * 109.47076 * 294.44625 * 1 2 3 27 27 H 1.08999 * 109.47297 * 120.00031 * 2 1 3 28 28 H 1.09008 * 109.47041 * 240.00169 * 2 1 3 29 29 H 0.96997 * 119.99359 * 179.97438 * 8 7 5 30 30 H 1.00904 * 110.99901 * 149.79214 * 13 3 2 31 31 H 1.09006 * 109.46730 * 294.90058 * 14 13 3 32 32 H 1.08996 * 109.47238 * 54.89521 * 14 13 3 33 33 H 1.08005 * 122.75109 * 359.97438 * 16 15 14 34 34 H 1.08999 * 109.47078 * 59.99561 * 20 19 18 35 35 H 1.09005 * 109.47008 * 179.97438 * 20 19 18 36 36 H 1.08998 * 109.46769 * 299.99380 * 20 19 18 37 37 H 1.09004 * 109.46792 * 60.00141 * 21 19 18 38 38 H 1.08998 * 109.47275 * 179.97438 * 21 19 18 39 39 H 1.08999 * 109.47287 * 300.00513 * 21 19 18 40 40 H 1.08998 * 109.47323 * 60.00006 * 22 19 18 41 41 H 1.08998 * 109.47538 * 180.02562 * 22 19 18 42 42 H 1.09004 * 109.47109 * 300.00383 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4428 0.0363 5 6 1.4970 2.1673 1.2045 6 1 0.8800 3.0440 1.0745 7 6 1.7880 1.7111 2.4727 8 7 2.5398 0.6436 2.6311 9 14 1.1155 2.6098 3.9658 10 1 -0.2057 2.0399 4.3331 11 1 2.0563 2.4521 5.1039 12 1 0.9613 4.0521 3.6474 13 7 1.5908 2.1207 -1.2232 14 6 2.5278 1.8858 -2.3298 15 6 1.9731 2.4892 -3.5944 16 6 2.1784 3.7372 -4.0260 17 7 1.5861 4.0251 -5.1675 18 6 0.8841 3.0927 -5.7175 19 6 0.1307 3.2319 -7.0152 20 6 1.1105 3.5729 -8.1397 21 6 -0.5775 1.9145 -7.3376 22 6 -0.9061 4.3495 -6.8857 23 16 0.9331 1.6761 -4.7613 24 1 -0.3633 -1.0228 -0.0994 25 1 -0.3634 0.5975 -0.8360 26 1 -0.3633 0.4253 0.9355 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 2.7447 0.3229 3.5233 30 1 1.4614 3.1084 -1.0624 31 1 3.4875 2.3477 -2.0975 32 1 2.6649 0.8134 -2.4685 33 1 2.7829 4.4504 -3.4853 34 1 1.8491 2.7766 -8.2319 35 1 0.5656 3.6731 -9.0785 36 1 1.6148 4.5115 -7.9099 37 1 -1.2756 1.6718 -6.5364 38 1 -1.1228 2.0153 -8.2760 39 1 0.1609 1.1180 -7.4297 40 1 -0.4018 5.2881 -6.6560 41 1 -1.4513 4.4499 -7.8242 42 1 -1.6042 4.1065 -6.0846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062839075.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:01 Heat of formation + Delta-G solvation = 4.802757 kcal Electronic energy + Delta-G solvation = -20007.164225 eV Core-core repulsion = 17112.458150 eV Total energy + Delta-G solvation = -2894.706075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84167 -38.37439 -37.47993 -34.82030 -32.94870 -30.82115 -28.38556 -28.24663 -28.14595 -26.71589 -25.13755 -24.39164 -21.92520 -20.98124 -19.62381 -18.80363 -18.23206 -16.91577 -16.50049 -16.01367 -15.86040 -15.39083 -15.27490 -15.17947 -14.74790 -14.44985 -14.13092 -14.06788 -13.60298 -13.31425 -13.08130 -12.98504 -12.82329 -12.64090 -12.58644 -12.43604 -12.40494 -12.17633 -11.97980 -11.91798 -11.80834 -11.65369 -11.33612 -10.82920 -10.55267 -10.46874 -10.12488 -9.72496 -9.06451 -8.10808 -6.22500 -0.19814 0.45337 0.90617 1.41334 1.43131 1.51846 1.88640 2.42108 3.11276 3.18473 3.66545 3.84555 3.99566 4.01175 4.10025 4.24345 4.41512 4.59222 4.63093 4.72635 4.77011 4.78925 4.85675 4.87427 4.93689 4.98934 4.99348 5.03832 5.16230 5.28159 5.30749 5.36912 5.39233 5.44066 5.54453 5.70301 5.79478 5.87031 6.25820 6.43173 6.72965 6.81130 6.98468 7.46018 8.94352 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031386 B = 0.003622 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.898764 B = 7729.501016 C = 7908.184564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.223 3.777 4 H -0.029 1.029 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.675 5.675 14 C 0.140 3.860 15 C -0.218 4.218 16 C 0.025 3.975 17 N -0.491 5.491 18 C 0.045 3.955 19 C 0.008 3.992 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.131 4.131 23 S 0.154 5.846 24 H 0.035 0.965 25 H 0.051 0.949 26 H 0.030 0.970 27 H 0.059 0.941 28 H 0.021 0.979 29 H 0.261 0.739 30 H 0.333 0.667 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.176 0.824 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.900 2.807 -20.570 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.114 3.886 4 H -0.012 1.012 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.306 5.306 14 C 0.008 3.992 15 C -0.340 4.340 16 C -0.127 4.127 17 N -0.205 5.205 18 C -0.233 4.233 19 C 0.004 3.996 20 C -0.187 4.187 21 C -0.211 4.211 22 C -0.189 4.189 23 S 0.411 5.589 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.049 0.951 27 H 0.077 0.923 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.150 0.850 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.193 0.807 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.624 1.680 -20.931 21.739 hybrid contribution 1.412 1.529 2.200 3.028 sum -4.212 3.209 -18.731 19.465 Atomic orbital electron populations 1.21293 0.96111 0.98462 1.00541 1.21317 0.96235 0.97584 0.98517 1.18936 0.91395 0.92260 0.85977 1.01184 1.21408 1.31512 1.12007 0.91278 0.92609 1.25583 0.95316 0.95701 1.01411 1.70012 1.38250 1.24270 1.22901 0.85638 0.78111 0.79168 0.79210 1.20302 1.21119 1.19412 1.60644 1.47484 1.16270 1.06186 1.20130 0.93130 0.99504 0.86419 1.25954 1.06375 0.98796 1.02847 1.21800 1.02342 0.95152 0.93371 1.66186 1.10664 1.33451 1.10161 1.27666 1.00831 0.92666 1.02157 1.19419 0.94535 0.98370 0.87260 1.21808 0.98346 1.01505 0.97088 1.22044 1.00796 0.94482 1.03744 1.21820 0.97326 0.96774 1.03019 1.83810 1.44522 1.16945 1.13658 0.94622 0.92977 0.95070 0.92297 0.96001 0.92981 0.84965 0.93979 0.91020 0.80691 0.92815 0.89230 0.93000 0.92231 0.88377 0.91803 0.93023 0.89158 0.93269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.71 9.46 71.98 0.68 -4.03 16 2 C -0.10 -4.70 5.58 30.60 0.17 -4.53 16 3 C 0.22 10.97 2.30 44.17 0.10 11.07 16 4 H -0.03 -1.61 7.84 -2.39 -0.02 -1.63 16 5 C -0.52 -27.90 7.34 25.60 0.19 -27.71 16 6 H 0.06 2.95 7.60 -2.91 -0.02 2.93 16 7 C 0.02 1.05 5.30 84.66 0.45 1.49 16 8 N -0.91 -51.81 11.34 21.45 0.24 -51.57 16 9 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 N -0.67 -27.90 5.50 -499.48 -2.74 -30.64 16 14 C 0.14 4.96 5.98 85.56 0.51 5.47 16 15 C -0.22 -6.86 6.15 24.64 0.15 -6.71 16 16 C 0.02 0.75 11.25 83.65 0.94 1.69 16 17 N -0.49 -14.51 10.53 -191.45 -2.02 -16.53 16 18 C 0.04 1.14 5.78 88.52 0.51 1.65 16 19 C 0.01 0.15 0.99 -52.93 -0.05 0.10 16 20 C -0.13 -2.04 8.45 71.98 0.61 -1.43 16 21 C -0.15 -2.17 7.54 71.98 0.54 -1.63 16 22 C -0.13 -2.24 8.45 71.98 0.61 -1.63 16 23 S 0.15 4.14 21.57 -56.49 -1.22 2.92 16 24 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 2.22 7.50 -2.39 -0.02 2.20 16 26 H 0.03 1.48 7.37 -2.39 -0.02 1.46 16 27 H 0.06 3.17 6.13 -2.39 -0.01 3.16 16 28 H 0.02 0.96 7.43 -2.38 -0.02 0.94 16 29 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 30 H 0.33 13.80 8.24 -89.69 -0.74 13.06 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 2.59 7.39 -2.39 -0.02 2.57 16 33 H 0.18 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.06 0.92 7.92 -2.38 -0.02 0.90 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -59.59 349.35 1.95 -57.63 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.25 Total: 19.19 kcal Atomic # 6 Polarization: -31.61 SS G_CDS: 5.41 Total: -26.20 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -4.52 Total: -98.74 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 4.14 SS G_CDS: -1.22 Total: 2.92 kcal Total: -59.59 1.95 -57.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062839075.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.437 kcal (2) G-P(sol) polarization free energy of solvation -59.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds