Wall clock time and date at job start Tue Mar 31 2020 06:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00217 * 2 1 4 4 H 1.48508 * 109.46925 * 273.67817 * 3 2 1 5 5 H 1.48497 * 109.47271 * 33.67376 * 3 2 1 6 6 H 1.48494 * 109.47458 * 153.68127 * 3 2 1 7 7 C 1.38821 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00153 * 339.32797 * 7 2 1 9 9 N 1.36931 * 119.99557 * 159.32809 * 7 2 1 10 10 C 1.46965 * 120.59855 * 332.31705 * 9 7 2 11 11 C 1.53372 * 108.63811 * 235.20577 * 10 9 7 12 12 N 1.46964 * 108.63344 * 310.57812 * 11 10 9 13 13 C 1.34773 * 120.58952 * 235.19764 * 12 11 10 14 14 O 1.21280 * 120.00351 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99699 * 179.72825 * 13 12 11 16 16 C 1.53012 * 109.47076 * 180.27751 * 15 13 12 17 17 H 1.09001 * 109.47604 * 305.02357 * 16 15 13 18 18 C 1.53089 * 109.48006 * 184.99755 * 16 15 13 19 19 C 1.53171 * 109.16362 * 182.40574 * 18 16 15 20 20 C 1.53185 * 109.03201 * 56.98359 * 19 18 16 21 21 C 1.53085 * 109.16342 * 303.01764 * 20 19 18 22 22 O 1.42903 * 109.47596 * 65.05638 * 16 15 13 23 23 C 1.46956 * 118.81221 * 55.47743 * 12 11 10 24 24 C 1.46972 * 120.59453 * 152.29971 * 9 7 2 25 25 H 0.96996 * 119.99703 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.60916 * 115.46137 * 10 9 7 27 27 H 1.08995 * 109.60672 * 354.95829 * 10 9 7 28 28 H 1.09000 * 109.60945 * 190.83187 * 11 10 9 29 29 H 1.09002 * 109.74800 * 70.40775 * 11 10 9 30 30 H 1.09001 * 109.46853 * 300.27222 * 15 13 12 31 31 H 1.08992 * 109.47520 * 60.28070 * 15 13 12 32 32 H 1.08999 * 109.52243 * 302.31536 * 18 16 15 33 33 H 1.08998 * 109.51969 * 62.43843 * 18 16 15 34 34 H 1.08999 * 109.54538 * 176.84623 * 19 18 16 35 35 H 1.08993 * 109.55035 * 297.11910 * 19 18 16 36 36 H 1.08997 * 109.52233 * 62.93096 * 20 19 18 37 37 H 1.09006 * 109.51877 * 183.11070 * 20 19 18 38 38 H 1.09002 * 109.47974 * 177.59431 * 21 20 19 39 39 H 1.09003 * 109.48563 * 297.61398 * 21 20 19 40 40 H 1.09001 * 109.61327 * 64.26643 * 23 12 11 41 41 H 1.09002 * 109.60784 * 184.77004 * 23 12 11 42 42 H 1.09000 * 109.61126 * 244.53998 * 24 9 7 43 43 H 1.09000 * 109.60664 * 5.05014 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4199 2.0912 -1.3973 5 1 1.4888 2.6290 0.7763 6 1 3.5845 1.4189 0.6207 7 6 2.0102 -1.2023 0.0005 8 1 1.5224 -2.1073 0.3311 9 7 3.3134 -1.2406 -0.4181 10 6 3.8144 -0.2634 -1.3948 11 6 4.4236 -1.0230 -2.5798 12 7 5.3465 -2.0418 -2.0600 13 6 6.6291 -2.0796 -2.4721 14 8 7.0311 -1.2679 -3.2786 15 6 7.5655 -3.1264 -1.9258 16 6 8.9520 -2.9446 -2.5470 17 1 8.8683 -2.9605 -3.6336 18 6 9.8696 -4.0811 -2.0888 19 6 11.2711 -3.8594 -2.6659 20 6 11.7821 -2.4850 -2.2228 21 6 10.7906 -1.4102 -2.6757 22 8 9.5008 -1.6931 -2.1292 23 6 4.8440 -3.0225 -1.0877 24 6 4.2364 -2.2595 0.1016 25 1 -0.4849 0.8400 -0.0004 26 1 4.5772 0.3609 -0.9293 27 1 2.9912 0.3598 -1.7439 28 1 4.9683 -0.3279 -3.2188 29 1 3.6325 -1.5048 -3.1543 30 1 7.6358 -3.0214 -0.8431 31 1 7.1848 -4.1179 -2.1708 32 1 9.9214 -4.0910 -1.0001 33 1 9.4751 -5.0332 -2.4434 34 1 11.9436 -4.6344 -2.2982 35 1 11.2277 -3.8988 -3.7542 36 1 11.8726 -2.4628 -1.1368 37 1 12.7561 -2.2957 -2.6742 38 1 11.1275 -0.4343 -2.3261 39 1 10.7313 -1.4057 -3.7642 40 1 4.0805 -3.6437 -1.5558 41 1 5.6664 -3.6484 -0.7411 42 1 5.0292 -1.7773 0.6735 43 1 3.6917 -2.9545 0.7406 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087378379.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:10 Heat of formation + Delta-G solvation = -57.776429 kcal Electronic energy + Delta-G solvation = -23243.080570 eV Core-core repulsion = 19902.907987 eV Total energy + Delta-G solvation = -3340.172584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.09299 -39.01549 -36.96032 -33.98766 -33.72579 -32.97692 -31.45264 -30.79713 -28.58376 -26.91950 -24.61487 -23.63447 -23.42575 -22.30712 -20.70576 -20.41428 -18.60808 -17.13753 -16.60615 -16.30856 -16.08397 -15.52462 -15.13926 -14.75953 -14.64735 -14.54908 -14.22950 -13.90985 -13.66181 -13.05348 -12.96642 -12.74709 -12.60018 -12.37670 -12.18009 -11.92757 -11.83569 -11.42309 -11.28430 -11.09581 -10.98343 -10.83439 -10.45644 -10.39926 -10.24030 -10.00276 -9.58885 -9.49763 -9.32294 -8.83796 -8.25368 -6.98570 -5.99850 -3.36913 2.96710 3.29893 3.33619 3.48539 3.51986 3.72213 4.45983 4.49682 4.54931 4.62204 4.70390 4.85941 4.94497 5.03923 5.08288 5.26605 5.27180 5.35607 5.43252 5.51242 5.56131 5.58049 5.59306 5.68205 5.70926 5.77028 5.81386 5.87434 5.91137 6.05423 6.08574 6.17574 6.24943 6.42552 6.52195 6.71173 6.95271 7.23942 7.81615 7.88887 8.27308 8.53727 8.86543 9.65980 10.02873 11.15750 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034513 B = 0.003941 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.084981 B = 7102.884485 C = 7430.536514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.026 3.974 3 Si 0.881 3.119 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.087 0.913 9 N -0.605 5.605 10 C 0.114 3.886 11 C 0.097 3.903 12 N -0.603 5.603 13 C 0.512 3.488 14 O -0.543 6.543 15 C -0.134 4.134 16 C 0.108 3.892 17 H 0.064 0.936 18 C -0.152 4.152 19 C -0.121 4.121 20 C -0.157 4.157 21 C 0.063 3.937 22 O -0.364 6.364 23 C 0.088 3.912 24 C 0.134 3.866 25 H 0.264 0.736 26 H 0.031 0.969 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.028 0.972 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.765 -9.401 -4.477 23.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.711 3.289 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.027 4.027 12 N -0.337 5.337 13 C 0.300 3.700 14 O -0.421 6.421 15 C -0.173 4.173 16 C 0.049 3.951 17 H 0.082 0.918 18 C -0.190 4.190 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.014 4.014 22 O -0.283 6.283 23 C -0.036 4.036 24 C 0.007 3.993 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.046 0.954 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 20.687 -8.751 -4.746 22.957 hybrid contribution 0.483 0.761 -0.049 0.902 sum 21.170 -7.991 -4.794 23.130 Atomic orbital electron populations 1.69830 1.05722 1.26685 1.52579 1.25279 0.95220 0.97617 0.99239 0.86980 0.80109 0.84639 0.77187 1.21453 1.22964 1.19556 1.18913 0.84748 0.94851 1.40733 0.89507 1.44291 1.08564 1.33902 1.46183 1.21717 0.97579 0.92270 0.89608 1.22183 0.91981 0.91098 0.97425 1.48039 1.09757 1.32191 1.43689 1.20428 0.82081 0.85713 0.81773 1.90659 1.75656 1.41083 1.34700 1.21747 0.93318 0.99301 1.02984 1.21759 0.91005 0.83952 0.98361 0.91817 1.22241 0.95779 0.98937 1.01994 1.21566 0.96383 0.97181 1.00754 1.22223 0.99314 0.95808 1.02175 1.22495 0.83117 0.98018 0.97769 1.88018 1.32310 1.36982 1.71000 1.22475 0.98715 0.91110 0.91347 1.21385 0.93016 0.91964 0.92943 0.92657 0.95128 0.90019 0.89817 0.91382 0.88114 0.87795 0.90874 0.90799 0.91542 0.91842 0.91115 0.91128 0.89143 0.93334 0.91154 0.90535 0.95368 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.46 13.97 55.49 0.78 -26.69 16 2 C 0.03 0.74 5.23 -17.43 -0.09 0.65 16 3 Si 0.88 22.50 24.37 -169.99 -4.14 18.36 16 4 H -0.29 -7.10 6.65 56.52 0.38 -6.73 16 5 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.27 -6.90 6.63 56.52 0.37 -6.53 16 7 C -0.26 -7.23 10.03 -15.06 -0.15 -7.38 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 N -0.61 -14.18 2.74 -171.76 -0.47 -14.65 16 10 C 0.11 2.57 4.37 -3.60 -0.02 2.56 16 11 C 0.10 1.89 6.59 -3.60 -0.02 1.86 16 12 N -0.60 -10.46 2.94 -172.22 -0.51 -10.96 16 13 C 0.51 8.58 7.58 -10.99 -0.08 8.49 16 14 O -0.54 -10.92 14.83 -8.81 -0.13 -11.05 16 15 C -0.13 -1.60 3.75 -27.88 -0.10 -1.71 16 16 C 0.11 1.28 2.19 -26.68 -0.06 1.22 16 17 H 0.06 0.82 7.95 -51.93 -0.41 0.40 16 18 C -0.15 -1.31 5.42 -26.60 -0.14 -1.45 16 19 C -0.12 -0.95 6.03 -26.55 -0.16 -1.11 16 20 C -0.16 -1.31 6.14 -26.59 -0.16 -1.47 16 21 C 0.06 0.68 6.84 37.20 0.25 0.94 16 22 O -0.36 -5.18 9.64 -49.59 -0.48 -5.66 16 23 C 0.09 1.33 6.54 -3.37 -0.02 1.31 16 24 C 0.13 2.48 6.69 -3.37 -0.02 2.46 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 26 H 0.03 0.71 7.18 -51.92 -0.37 0.34 16 27 H 0.08 1.97 4.41 -51.93 -0.23 1.74 16 28 H 0.08 1.63 6.99 -51.93 -0.36 1.26 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.10 1.14 7.73 -51.93 -0.40 0.73 16 31 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.08 0.86 5.91 -51.93 -0.31 0.55 16 42 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -33.43 328.21 -7.96 -41.39 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.17 Total: -2.03 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.79 Total: 6.36 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.20 Total: -52.30 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.61 Total: -16.71 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.43 -7.96 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087378379.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.387 kcal (2) G-P(sol) polarization free energy of solvation -33.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds