Wall clock time and date at job start Tue Mar 31 2020 06:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48501 * 109.47190 * 89.99816 * 3 2 1 5 5 H 1.48497 * 109.46995 * 209.99753 * 3 2 1 6 6 H 1.48500 * 109.47059 * 330.00163 * 3 2 1 7 7 C 1.38813 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 162.43641 * 7 2 1 9 9 N 1.36940 * 119.99742 * 342.43568 * 7 2 1 10 10 C 1.46961 * 120.59192 * 151.56273 * 9 7 2 11 11 C 1.53815 * 108.39782 * 124.76017 * 10 9 7 12 12 N 1.46958 * 108.58009 * 49.63526 * 11 10 9 13 13 C 1.34780 * 120.59417 * 124.66962 * 12 11 10 14 14 O 1.21287 * 120.00026 * 179.97438 * 13 12 11 15 15 C 1.50699 * 119.99890 * 359.97438 * 13 12 11 16 16 C 1.53004 * 109.47057 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.48473 * 55.01675 * 16 15 13 18 18 C 1.53090 * 109.47927 * 175.05777 * 16 15 13 19 19 C 1.53187 * 109.16021 * 177.58804 * 18 16 15 20 20 C 1.53179 * 109.03442 * 303.01601 * 19 18 16 21 21 C 1.53093 * 109.16122 * 56.98457 * 20 19 18 22 22 O 1.42901 * 109.41559 * 302.38592 * 21 20 19 23 23 C 1.46960 * 118.81288 * 304.65097 * 12 11 10 24 24 C 1.46968 * 120.59445 * 331.84258 * 9 7 2 25 25 H 0.97005 * 119.99243 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.61278 * 244.53965 * 10 9 7 27 27 H 1.08995 * 109.61350 * 5.05183 * 10 9 7 28 28 H 1.08999 * 109.74295 * 289.84726 * 11 10 9 29 29 H 1.09006 * 109.53309 * 169.30287 * 11 10 9 30 30 H 1.09004 * 109.46843 * 299.99463 * 15 13 12 31 31 H 1.08991 * 109.47494 * 60.00093 * 15 13 12 32 32 H 1.08995 * 109.52195 * 297.49001 * 18 16 15 33 33 H 1.08997 * 109.52618 * 57.68178 * 18 16 15 34 34 H 1.09000 * 109.54235 * 183.15169 * 19 18 16 35 35 H 1.08997 * 109.61260 * 62.93015 * 19 18 16 36 36 H 1.08994 * 109.52298 * 297.07358 * 20 19 18 37 37 H 1.08997 * 109.57144 * 176.91770 * 20 19 18 38 38 H 1.09002 * 109.47782 * 182.40709 * 21 20 19 39 39 H 1.09003 * 109.49065 * 62.37853 * 21 20 19 40 40 H 1.09004 * 109.61264 * 295.47966 * 23 12 11 41 41 H 1.09007 * 109.61591 * 174.97181 * 23 12 11 42 42 H 1.08993 * 109.60778 * 354.94758 * 24 9 7 43 43 H 1.08999 * 109.60814 * 115.45659 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0525 -1.2239 -0.2828 9 7 1.3734 -2.3606 0.3568 10 6 1.8090 -3.6530 -0.1904 11 6 2.1160 -4.5986 0.9833 12 7 0.9808 -4.5709 1.9162 13 6 0.3540 -5.7110 2.2679 14 8 -0.5815 -5.6757 3.0390 15 6 0.8155 -7.0297 1.7030 16 6 -0.0585 -8.1562 2.2582 17 1 -1.1065 -7.9384 2.0522 18 6 0.3290 -9.4787 1.5916 19 6 -0.5081 -10.6105 2.1957 20 6 -0.2910 -10.6381 3.7117 21 6 -0.6545 -9.2707 4.2964 22 8 0.1381 -8.2602 3.6698 23 6 0.5416 -3.2778 2.4591 24 6 0.2381 -2.3329 1.2898 25 1 -0.4849 0.8402 -0.0004 26 1 1.0152 -4.0759 -0.8063 27 1 2.7064 -3.5116 -0.7926 28 1 3.0191 -4.2677 1.4962 29 1 2.2562 -5.6122 0.6077 30 1 0.7329 -7.0082 0.6163 31 1 1.8539 -7.2024 1.9851 32 1 0.1381 -9.4163 0.5203 33 1 1.3871 -9.6768 1.7630 34 1 -0.1982 -11.5629 1.7655 35 1 -1.5631 -10.4397 1.9814 36 1 0.7545 -10.8596 3.9260 37 1 -0.9245 -11.4049 4.1574 38 1 -0.4613 -9.2711 5.3692 39 1 -1.7104 -9.0677 4.1173 40 1 1.3326 -2.8527 3.0770 41 1 -0.3580 -3.4190 3.0582 42 1 0.0980 -1.3193 1.6653 43 1 -0.6650 -2.6638 0.7769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087378380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:13 Heat of formation + Delta-G solvation = -64.310327 kcal Electronic energy + Delta-G solvation = -23086.254257 eV Core-core repulsion = 19745.798342 eV Total energy + Delta-G solvation = -3340.455915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.95864 -38.87316 -36.67495 -33.86036 -33.66413 -32.88524 -31.14824 -30.39319 -28.34950 -26.70829 -24.55527 -23.64935 -23.06159 -22.23638 -20.40482 -20.29897 -18.46421 -17.05242 -16.51006 -16.17772 -15.93074 -15.31448 -14.85621 -14.72916 -14.61494 -14.41644 -13.69499 -13.61802 -13.49262 -13.23684 -12.83170 -12.69146 -12.60857 -12.32596 -11.75933 -11.68357 -11.35406 -11.23200 -11.21421 -10.88825 -10.78312 -10.69597 -10.54169 -10.37583 -10.21607 -9.94404 -9.81797 -9.43673 -9.18826 -8.57233 -8.15146 -6.70070 -5.83853 -3.29265 3.12632 3.35547 3.42157 3.43458 3.51986 3.78514 4.44606 4.55123 4.61844 4.68138 4.77287 5.03204 5.11408 5.15047 5.28175 5.32766 5.34260 5.45381 5.54181 5.57787 5.64509 5.72729 5.76630 5.77796 5.80673 5.87282 5.92047 5.96370 6.14119 6.20753 6.39449 6.43000 6.54141 6.71747 6.92851 7.29471 7.30453 7.57215 7.73410 8.01716 8.37284 8.70809 9.12957 9.75871 10.32722 11.23363 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047574 B = 0.003426 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.421582 B = 8170.021722 C = 8422.604013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.258 4.258 8 H 0.068 0.932 9 N -0.592 5.592 10 C 0.131 3.869 11 C 0.089 3.911 12 N -0.601 5.601 13 C 0.511 3.489 14 O -0.546 6.546 15 C -0.133 4.133 16 C 0.108 3.892 17 H 0.065 0.935 18 C -0.151 4.151 19 C -0.122 4.122 20 C -0.157 4.157 21 C 0.063 3.937 22 O -0.365 6.365 23 C 0.088 3.912 24 C 0.159 3.841 25 H 0.255 0.745 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.482 -19.415 3.615 19.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.387 4.387 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.003 3.997 11 C -0.036 4.036 12 N -0.334 5.334 13 C 0.298 3.702 14 O -0.424 6.424 15 C -0.173 4.173 16 C 0.049 3.951 17 H 0.083 0.917 18 C -0.189 4.189 19 C -0.159 4.159 20 C -0.195 4.195 21 C -0.014 4.014 22 O -0.284 6.284 23 C -0.035 4.035 24 C 0.032 3.968 25 H 0.065 0.935 26 H 0.041 0.959 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 1.012 -19.096 4.097 19.557 hybrid contribution 0.318 0.688 -0.258 0.801 sum 1.330 -18.408 3.840 18.851 Atomic orbital electron populations 1.70032 1.05329 1.25733 1.53331 1.25089 0.95296 0.98585 1.00586 0.86256 0.79068 0.83454 0.77759 1.21336 1.20391 1.21744 1.19202 0.92808 0.84741 1.41966 0.91455 1.44021 1.36741 1.01513 1.49174 1.21371 0.98319 0.87471 0.92520 1.22444 0.88613 1.00160 0.92358 1.48065 1.32892 1.06915 1.45507 1.20381 0.82954 0.85237 0.81586 1.90652 1.28978 1.86771 1.35959 1.21738 1.01681 0.92286 1.01598 1.21768 0.98983 0.92599 0.81720 0.91727 1.22242 1.00984 0.95276 1.00424 1.21569 1.00277 0.98634 0.95433 1.22218 1.02525 0.98446 0.96287 1.22489 0.94981 0.86619 0.97322 1.87997 1.64949 1.55583 1.19863 1.22458 0.99742 0.82923 0.98409 1.21188 0.88953 0.98666 0.87944 0.93458 0.95928 0.91537 0.91662 0.91012 0.87767 0.88464 0.90745 0.90970 0.91596 0.91792 0.91206 0.91169 0.89214 0.93296 0.92393 0.90226 0.88335 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.88 11.20 55.49 0.62 -25.25 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.01 16 3 Si 0.90 21.33 29.59 -169.99 -5.03 16.30 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 8 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.52 2.96 -171.77 -0.51 -15.03 16 10 C 0.13 2.57 6.70 -3.37 -0.02 2.55 16 11 C 0.09 1.45 6.52 -3.37 -0.02 1.43 16 12 N -0.60 -11.20 2.95 -172.22 -0.51 -11.71 16 13 C 0.51 9.20 7.58 -10.98 -0.08 9.11 16 14 O -0.55 -11.66 14.83 -8.87 -0.13 -11.79 16 15 C -0.13 -1.74 3.75 -27.88 -0.10 -1.84 16 16 C 0.11 1.37 2.19 -26.68 -0.06 1.31 16 17 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 18 C -0.15 -1.42 5.42 -26.59 -0.14 -1.56 16 19 C -0.12 -1.02 6.03 -26.54 -0.16 -1.18 16 20 C -0.16 -1.35 6.14 -26.59 -0.16 -1.52 16 21 C 0.06 0.70 6.84 37.21 0.25 0.95 16 22 O -0.37 -5.31 9.64 -49.65 -0.48 -5.79 16 23 C 0.09 1.84 6.59 -3.60 -0.02 1.82 16 24 C 0.16 3.85 5.51 -3.60 -0.02 3.83 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 30 H 0.10 1.14 7.72 -51.93 -0.40 0.74 16 31 H 0.10 1.14 7.91 -51.93 -0.41 0.73 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.08 1.68 6.99 -51.92 -0.36 1.32 16 42 H 0.10 2.63 5.99 -51.93 -0.31 2.32 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -32.14 334.55 -9.01 -41.15 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.24 Total: -0.79 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -0.78 Total: 7.88 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: -0.39 Total: -52.00 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.61 Total: -17.58 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.14 -9.01 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087378380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.160 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds