Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48501 * 109.47190 * 89.99816 * 3 2 1 5 5 H 1.48497 * 109.46995 * 209.99753 * 3 2 1 6 6 H 1.48500 * 109.47059 * 330.00163 * 3 2 1 7 7 C 1.38813 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 162.43641 * 7 2 1 9 9 N 1.36940 * 119.99742 * 342.43568 * 7 2 1 10 10 C 1.46961 * 120.59192 * 151.56273 * 9 7 2 11 11 C 1.53815 * 108.39782 * 124.76017 * 10 9 7 12 12 N 1.46958 * 108.58009 * 49.63526 * 11 10 9 13 13 C 1.34780 * 120.59417 * 124.66962 * 12 11 10 14 14 O 1.21287 * 120.00026 * 179.97438 * 13 12 11 15 15 C 1.50699 * 119.99890 * 359.97438 * 13 12 11 16 16 C 1.53004 * 109.47057 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.48473 * 55.01675 * 16 15 13 18 18 C 1.53090 * 109.47927 * 175.05777 * 16 15 13 19 19 C 1.53187 * 109.16021 * 177.58804 * 18 16 15 20 20 C 1.53179 * 109.03442 * 303.01601 * 19 18 16 21 21 C 1.53093 * 109.16122 * 56.98457 * 20 19 18 22 22 O 1.42901 * 109.41559 * 302.38592 * 21 20 19 23 23 C 1.46960 * 118.81288 * 304.65097 * 12 11 10 24 24 C 1.46968 * 120.59445 * 331.84258 * 9 7 2 25 25 H 0.97005 * 119.99243 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.61278 * 244.53965 * 10 9 7 27 27 H 1.08995 * 109.61350 * 5.05183 * 10 9 7 28 28 H 1.08999 * 109.74295 * 289.84726 * 11 10 9 29 29 H 1.09006 * 109.53309 * 169.30287 * 11 10 9 30 30 H 1.09004 * 109.46843 * 299.99463 * 15 13 12 31 31 H 1.08991 * 109.47494 * 60.00093 * 15 13 12 32 32 H 1.08995 * 109.52195 * 297.49001 * 18 16 15 33 33 H 1.08997 * 109.52618 * 57.68178 * 18 16 15 34 34 H 1.09000 * 109.54235 * 183.15169 * 19 18 16 35 35 H 1.08997 * 109.61260 * 62.93015 * 19 18 16 36 36 H 1.08994 * 109.52298 * 297.07358 * 20 19 18 37 37 H 1.08997 * 109.57144 * 176.91770 * 20 19 18 38 38 H 1.09002 * 109.47782 * 182.40709 * 21 20 19 39 39 H 1.09003 * 109.49065 * 62.37853 * 21 20 19 40 40 H 1.09004 * 109.61264 * 295.47966 * 23 12 11 41 41 H 1.09007 * 109.61591 * 174.97181 * 23 12 11 42 42 H 1.08993 * 109.60778 * 354.94758 * 24 9 7 43 43 H 1.08999 * 109.60814 * 115.45659 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0525 -1.2239 -0.2828 9 7 1.3734 -2.3606 0.3568 10 6 1.8090 -3.6530 -0.1904 11 6 2.1160 -4.5986 0.9833 12 7 0.9808 -4.5709 1.9162 13 6 0.3540 -5.7110 2.2679 14 8 -0.5815 -5.6757 3.0390 15 6 0.8155 -7.0297 1.7030 16 6 -0.0585 -8.1562 2.2582 17 1 -1.1065 -7.9384 2.0522 18 6 0.3290 -9.4787 1.5916 19 6 -0.5081 -10.6105 2.1957 20 6 -0.2910 -10.6381 3.7117 21 6 -0.6545 -9.2707 4.2964 22 8 0.1381 -8.2602 3.6698 23 6 0.5416 -3.2778 2.4591 24 6 0.2381 -2.3329 1.2898 25 1 -0.4849 0.8402 -0.0004 26 1 1.0152 -4.0759 -0.8063 27 1 2.7064 -3.5116 -0.7926 28 1 3.0191 -4.2677 1.4962 29 1 2.2562 -5.6122 0.6077 30 1 0.7329 -7.0082 0.6163 31 1 1.8539 -7.2024 1.9851 32 1 0.1381 -9.4163 0.5203 33 1 1.3871 -9.6768 1.7630 34 1 -0.1982 -11.5629 1.7655 35 1 -1.5631 -10.4397 1.9814 36 1 0.7545 -10.8596 3.9260 37 1 -0.9245 -11.4049 4.1574 38 1 -0.4613 -9.2711 5.3692 39 1 -1.7104 -9.0677 4.1173 40 1 1.3326 -2.8527 3.0770 41 1 -0.3580 -3.4190 3.0582 42 1 0.0980 -1.3193 1.6653 43 1 -0.6650 -2.6638 0.7769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087378380.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = -84.139851 kcal Electronic energy + Delta-G solvation = -23087.114130 eV Core-core repulsion = 19745.798342 eV Total energy + Delta-G solvation = -3341.315787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21847 -39.99719 -38.33033 -35.60906 -34.47199 -33.92001 -33.02590 -31.98278 -29.49595 -28.35860 -25.69787 -25.14866 -24.47202 -23.47014 -21.95509 -21.13901 -20.02672 -18.68223 -17.76428 -17.46309 -17.06222 -16.70518 -16.53932 -16.14574 -15.49399 -15.46240 -15.33569 -15.20472 -14.98419 -14.73545 -14.11379 -13.90308 -13.51633 -13.40721 -13.25878 -13.06499 -12.85005 -12.65363 -12.46229 -12.25803 -12.13858 -12.00006 -11.93047 -11.86716 -11.66384 -11.58278 -11.21546 -10.71667 -10.60401 -10.27111 -9.77280 -8.65916 -7.88464 -5.37348 1.47980 1.50234 1.58497 1.74138 2.10011 2.51282 2.88569 3.26107 3.54463 3.61528 3.77709 3.97924 4.00123 4.14218 4.22270 4.25862 4.26841 4.36935 4.43770 4.50917 4.54083 4.60241 4.67361 4.72654 4.80149 4.82357 4.91102 4.94901 5.00831 5.07495 5.12099 5.16855 5.21673 5.26375 5.43118 5.46328 5.61399 5.70017 6.35210 6.38838 6.59786 7.09013 7.28238 7.79284 8.32629 9.16654 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047574 B = 0.003426 C = 0.003324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.421582 B = 8170.021722 C = 8422.604013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.264 1.264 6 H -0.298 1.298 7 C -0.262 4.262 8 H 0.077 0.923 9 N -0.610 5.610 10 C 0.124 3.876 11 C 0.098 3.902 12 N -0.607 5.607 13 C 0.504 3.496 14 O -0.587 6.587 15 C -0.125 4.125 16 C 0.103 3.897 17 H 0.040 0.960 18 C -0.144 4.144 19 C -0.124 4.124 20 C -0.150 4.150 21 C 0.054 3.946 22 O -0.396 6.396 23 C 0.103 3.897 24 C 0.172 3.828 25 H 0.250 0.750 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.067 0.933 43 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.709 -21.824 2.916 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.188 1.188 6 H -0.225 1.225 7 C -0.392 4.392 8 H 0.094 0.906 9 N -0.334 5.334 10 C -0.002 4.002 11 C -0.025 4.025 12 N -0.340 5.340 13 C 0.294 3.706 14 O -0.467 6.467 15 C -0.165 4.165 16 C 0.045 3.955 17 H 0.058 0.942 18 C -0.181 4.181 19 C -0.161 4.161 20 C -0.188 4.188 21 C -0.022 4.022 22 O -0.316 6.316 23 C -0.022 4.022 24 C 0.045 3.955 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.140 0.860 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.112 0.888 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.010 0.990 Dipole moment (debyes) X Y Z Total from point charges 3.278 -21.553 3.381 22.061 hybrid contribution -0.415 1.396 -0.031 1.456 sum 2.864 -20.157 3.351 20.633 Atomic orbital electron populations 1.70193 1.06910 1.25973 1.55249 1.25872 0.95972 1.01815 1.01115 0.85230 0.78202 0.79307 0.77475 1.21390 1.18806 1.22515 1.19592 0.93309 0.85713 1.40612 0.90553 1.44283 1.36463 1.02926 1.49709 1.21612 0.98589 0.85878 0.94080 1.22495 0.87624 1.01975 0.90412 1.48187 1.33677 1.06133 1.45977 1.21351 0.81975 0.86491 0.80766 1.90635 1.30802 1.87466 1.37831 1.21849 1.02760 0.88861 1.02983 1.21856 0.97725 0.94425 0.81488 0.94151 1.22195 1.01614 0.93289 1.01026 1.21619 1.00040 0.99287 0.95166 1.22164 1.03029 0.96983 0.96583 1.22664 0.94184 0.87611 0.97762 1.87941 1.65576 1.57039 1.20997 1.22026 0.99500 0.83917 0.96768 1.20846 0.88213 0.97640 0.88784 0.94101 0.96334 0.90016 0.90973 0.86021 0.84824 0.86046 0.89030 0.89946 0.89519 0.92192 0.90848 0.89469 0.88762 0.94302 0.92150 0.91248 0.91478 0.99042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.67 11.20 21.65 0.24 -55.43 16 2 C -0.05 -2.89 4.90 84.86 0.42 -2.47 16 3 Si 0.97 44.23 29.59 68.60 2.03 46.26 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 6 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.26 -13.96 9.58 84.03 0.80 -13.16 16 8 H 0.08 3.86 7.89 -2.91 -0.02 3.83 16 9 N -0.61 -29.98 2.96 -697.35 -2.06 -32.04 16 10 C 0.12 4.66 6.70 86.57 0.58 5.24 16 11 C 0.10 2.89 6.52 86.57 0.56 3.46 16 12 N -0.61 -21.88 2.95 -817.15 -2.41 -24.29 16 13 C 0.50 17.56 7.58 87.66 0.66 18.23 16 14 O -0.59 -25.43 14.83 10.74 0.16 -25.27 16 15 C -0.13 -2.88 3.75 29.85 0.11 -2.77 16 16 C 0.10 2.44 2.19 30.63 0.07 2.51 16 17 H 0.04 1.13 7.96 -2.39 -0.02 1.11 16 18 C -0.14 -2.20 5.42 30.69 0.17 -2.04 16 19 C -0.12 -1.72 6.03 30.72 0.19 -1.53 16 20 C -0.15 -2.24 6.14 30.69 0.19 -2.05 16 21 C 0.05 1.17 6.84 72.01 0.49 1.66 16 22 O -0.40 -11.15 9.64 -135.19 -1.30 -12.45 16 23 C 0.10 4.36 6.59 86.41 0.57 4.93 16 24 C 0.17 8.64 5.51 86.41 0.48 9.11 16 25 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 26 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.08 2.80 7.93 -2.39 -0.02 2.78 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.12 2.39 5.91 -2.38 -0.01 2.38 16 30 H 0.13 2.30 7.72 -2.38 -0.02 2.28 16 31 H 0.12 2.27 7.91 -2.39 -0.02 2.25 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.07 3.07 6.99 -2.38 -0.02 3.05 16 42 H 0.07 3.77 5.99 -2.39 -0.01 3.76 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: -1.00 -72.48 334.55 2.92 -69.56 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: 0.97 Total: 12.52 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.29 Total: 21.13 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.23 Total: -111.76 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.14 Total: -37.72 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -72.48 2.92 -69.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087378380.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.578 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds