Wall clock time and date at job start Tue Mar 31 2020 05:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48498 * 109.46771 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46887 * 299.99366 * 3 2 1 6 6 H 1.48495 * 109.47359 * 59.99792 * 3 2 1 7 7 C 1.37874 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00219 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00478 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47462 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46867 * 179.97438 * 10 9 7 12 12 N 1.46504 * 109.46781 * 180.02562 * 11 10 9 13 13 C 1.34775 * 119.99843 * 180.02562 * 12 11 10 14 14 O 1.21588 * 120.00239 * 355.03107 * 13 12 11 15 15 N 1.34777 * 119.99742 * 175.03710 * 13 12 11 16 16 C 1.47142 * 120.98293 * 6.36358 * 15 13 12 17 17 C 1.53299 * 108.38319 * 129.44331 * 16 15 13 18 18 O 1.42960 * 109.22523 * 52.30161 * 17 16 15 19 19 C 1.42959 * 114.16534 * 297.42236 * 18 17 16 20 20 C 1.47151 * 120.97888 * 186.08106 * 15 13 12 21 21 H 1.08998 * 109.68221 * 110.83334 * 20 15 13 22 22 C 1.52999 * 109.68407 * 350.28297 * 20 15 13 23 23 C 1.53000 * 117.49951 * 259.69790 * 22 20 15 24 24 C 1.52999 * 117.50212 * 191.04410 * 22 20 15 25 25 H 0.97002 * 119.99849 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47106 * 59.99506 * 9 7 2 27 27 H 1.08998 * 109.47048 * 300.00229 * 9 7 2 28 28 H 1.08999 * 109.46886 * 60.00374 * 10 9 7 29 29 H 1.08998 * 109.47095 * 299.99740 * 10 9 7 30 30 H 1.08998 * 109.47165 * 299.99838 * 11 10 9 31 31 H 1.08996 * 109.47168 * 60.00080 * 11 10 9 32 32 H 0.97001 * 119.99819 * 0.02562 * 12 11 10 33 33 H 1.08997 * 109.68192 * 249.16043 * 16 15 13 34 34 H 1.08997 * 109.68813 * 9.68261 * 16 15 13 35 35 H 1.09007 * 109.51357 * 172.22647 * 17 16 15 36 36 H 1.08994 * 109.51171 * 292.37406 * 17 16 15 37 37 H 1.09006 * 109.51083 * 182.50613 * 19 18 17 38 38 H 1.09006 * 109.51034 * 302.64948 * 19 18 17 39 39 H 1.08999 * 115.55126 * 45.36799 * 22 20 15 40 40 H 1.09002 * 117.49869 * 0.02562 * 23 22 20 41 41 H 1.09005 * 117.50075 * 145.01681 * 23 22 20 42 42 H 1.09007 * 117.50062 * 214.98022 * 24 22 20 43 43 H 1.09007 * 117.49944 * 359.96713 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4322 -6.1007 0.0018 13 6 1.9829 -7.3713 0.0019 14 8 0.7912 -7.5948 0.0927 15 7 2.8546 -8.3943 -0.0985 16 6 4.3066 -8.1577 -0.0697 17 6 4.9296 -9.1004 0.9663 18 8 4.5098 -10.4401 0.6963 19 6 3.0990 -10.6444 0.8046 20 6 2.3823 -9.7813 -0.2340 21 1 2.6099 -10.1506 -1.2340 22 6 0.8722 -9.8373 0.0054 23 6 0.3919 -10.3031 1.3814 24 6 0.2328 -11.2181 0.1648 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8895 30 1 0.8538 -5.0446 0.8914 31 1 0.8532 -5.0451 -0.8885 32 1 3.3858 -5.9234 0.0021 33 1 4.7312 -8.3608 -1.0528 34 1 4.5046 -7.1228 0.2091 35 1 6.0163 -9.0403 0.9064 36 1 4.6028 -8.8108 1.9650 37 1 2.8688 -11.6951 0.6282 38 1 2.7656 -10.3604 1.8028 39 1 0.2876 -9.0670 -0.4975 40 1 1.1517 -10.5692 2.1162 41 1 -0.5089 -9.8394 1.7835 42 1 -0.7726 -11.3562 -0.2331 43 1 0.8880 -12.0868 0.0985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089896442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:11 Heat of formation + Delta-G solvation = -25.924956 kcal Electronic energy + Delta-G solvation = -22620.775106 eV Core-core repulsion = 19281.983706 eV Total energy + Delta-G solvation = -3338.791400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.99245 -38.70454 -37.30514 -35.37519 -34.83099 -33.26007 -31.34020 -30.90786 -28.04782 -26.46903 -25.14997 -23.27986 -22.80390 -22.21681 -20.89986 -20.56715 -19.47296 -17.73646 -17.08131 -16.48272 -16.25458 -15.90760 -15.56648 -15.36121 -14.97774 -14.62412 -14.43697 -14.22728 -14.17610 -13.38923 -13.33541 -12.39004 -12.27824 -12.11959 -11.89173 -11.77457 -11.62554 -11.53212 -11.16334 -10.93609 -10.72242 -10.66609 -10.56687 -10.28215 -10.20069 -9.88366 -9.53916 -9.14001 -8.99385 -8.74267 -8.48397 -8.39026 -6.03455 -4.06554 2.47722 3.24225 3.28670 3.36251 3.39549 3.43245 3.85643 3.90645 4.40828 4.43074 4.57112 4.63804 4.72552 4.82496 4.88460 5.00441 5.03916 5.14094 5.32482 5.33753 5.42172 5.51764 5.58471 5.67765 5.69953 5.78803 5.90162 6.10543 6.15331 6.16819 6.39548 6.59539 6.70390 6.73121 6.79882 6.97164 7.01821 7.62177 7.74609 7.95384 8.01213 8.36311 8.71224 9.00323 9.57776 11.07859 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029078 B = 0.003094 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.696135 B = 9048.853361 C = 9823.703252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.708 3.292 14 O -0.573 6.573 15 N -0.633 5.633 16 C 0.076 3.924 17 C 0.047 3.953 18 O -0.380 6.380 19 C 0.043 3.957 20 C 0.163 3.837 21 H 0.082 0.918 22 C -0.151 4.151 23 C -0.176 4.176 24 C -0.195 4.195 25 H 0.261 0.739 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.391 0.609 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.164 0.836 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.376 -22.336 0.864 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.011 3.989 12 N -0.398 5.398 13 C 0.410 3.590 14 O -0.452 6.452 15 N -0.372 5.372 16 C -0.047 4.047 17 C -0.031 4.031 18 O -0.298 6.298 19 C -0.034 4.034 20 C 0.059 3.941 21 H 0.100 0.900 22 C -0.169 4.169 23 C -0.213 4.213 24 C -0.233 4.233 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.226 0.774 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.081 0.919 39 H 0.181 0.819 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.462 -22.479 0.865 23.701 hybrid contribution 0.811 1.295 0.128 1.534 sum 8.273 -21.184 0.993 22.764 Atomic orbital electron populations 1.69976 1.06055 1.26586 1.50618 1.25032 0.94859 0.99315 0.95282 0.86529 0.80037 0.83766 0.77612 1.19766 1.20991 1.21000 1.21236 0.93010 0.90934 1.50843 0.92620 1.19028 0.93838 0.90801 0.97691 1.21890 0.99807 0.93382 1.00757 1.21521 0.91311 0.84140 1.01897 1.45687 1.10470 1.04554 1.79089 1.15964 0.84844 0.80509 0.77635 1.90729 1.14531 1.82116 1.57805 1.47293 1.05210 1.05902 1.78842 1.22333 0.80973 1.00600 1.00841 1.22986 1.00148 0.82466 0.97463 1.87954 1.22588 1.27988 1.91271 1.23271 0.80872 1.00393 0.98906 1.21107 0.93453 0.80327 0.99191 0.90043 1.23426 0.93865 0.97677 1.01922 1.22961 1.03315 1.03619 0.91393 1.23116 1.02341 0.94175 1.03678 0.92970 0.96250 0.96236 0.92837 0.92809 0.91846 0.91967 0.77366 0.90399 0.89182 0.87497 0.92485 0.87784 0.91871 0.81922 0.89290 0.88954 0.88852 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.13 2.34 5.68 -4.04 -0.02 2.32 16 12 N -0.74 -10.68 5.46 -65.22 -0.36 -11.04 16 13 C 0.71 10.63 8.24 -86.92 -0.72 9.91 16 14 O -0.57 -10.23 12.10 5.29 0.06 -10.17 16 15 N -0.63 -7.45 3.03 -170.69 -0.52 -7.97 16 16 C 0.08 0.66 6.56 -3.54 -0.02 0.63 16 17 C 0.05 0.37 6.98 37.31 0.26 0.63 16 18 O -0.38 -3.76 10.74 -35.23 -0.38 -4.14 16 19 C 0.04 0.40 5.25 37.09 0.19 0.60 16 20 C 0.16 1.77 3.51 -67.64 -0.24 1.54 16 21 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.15 -1.83 4.10 -90.62 -0.37 -2.20 16 23 C -0.18 -1.97 9.70 -26.70 -0.26 -2.23 16 24 C -0.20 -1.88 9.92 -26.70 -0.26 -2.15 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.39 4.60 6.05 -40.82 -0.25 4.36 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.67 5.81 -51.93 -0.30 0.37 16 35 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.81 7.11 -51.93 -0.37 0.44 16 38 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 39 H 0.16 2.51 5.31 -54.99 -0.29 2.22 16 40 H 0.09 0.90 5.72 -51.93 -0.30 0.60 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.69 7.13 -51.92 -0.37 0.32 16 LS Contribution 337.07 15.07 5.08 5.08 Total: -1.00 -31.87 337.07 -9.32 -41.19 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.80 Total: 2.87 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.13 Total: -6.21 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: -0.14 Total: -44.97 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.31 Total: -14.31 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.87 -9.32 -41.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089896442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.267 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds